Publications: Zhou, Gaofeng

Journal Article

Jia, Y., Westcott, S., He, T.ORCID: 0000-0002-0924-3637, McFawn, L.A., Angessa, T., Hill, C.ORCID: 0000-0002-6754-5553, Tan, C., Zhang, X., Zhou, G. and Li, C. (2021) Genome-wide association studies reveal QTL hotspots for grain brightness and black point traits in barley. The Crop Journal, 9 (1). pp. 154-167.

He, T.ORCID: 0000-0002-0924-3637, Angessa, T.T., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhang, X-Q, Chen, K., Luo, H., Wang, Y., Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2021) Genomic structural equation modelling provides a whole-system approach for the future crop breeding. Theoretical and Applied Genetics, 134 . pp. 2875-2889.

Zhou, G., Yang, H., Renshaw, D., Zou, M., Thomas, G. and Li, C. (2021) Identification of gray leaf spot disease candidate gene in Narrow-Leafed Lupin (Lupinus angustifolius L.). Frontiers in Genetics, 12 . Art. 695791.

Tong, C., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhou, G., Zhang, X-Q, Jia, Y. and Li, C. (2021) Opportunities for improving waterlogging tolerance in cereal crops—Physiological traits and genetic mechanisms. Plants, 10 (8). Article 1560.

Mwando, E., Angessa, T.T., Han, Y.ORCID: 0000-0001-6480-0398, Zhou, G. and Li, C. (2021) Quantitative trait loci mapping for vigour and survival traits of barley seedlings after germinating under salinity stress. Agronomy, 11 (1). Article 103.

Wang, P., Zhou, G., Jian, J., Yang, H., Renshaw, D., Aubert, M.K., Clements, J., He, T.ORCID: 0000-0002-0924-3637, Sweetingham, M. and Li, C. (2021) Whole‐genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow‐leafed lupin. The Plant Journal . Early View.

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X‐Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2021) A global barley panel revealing genomic signatures of breeding in modern Australian cultivars. The Plant Journal . Early View.

Tan, C., Chapman, B.ORCID: 0000-0001-7518-6645, Wang, P., Zhang, Q., Zhou, G., Zhang, X-Q, Barrero, R.A., Bellgard, M.I. and Li, C. (2020) BarleyVarDB: A database of barley genomic variation. Database, 2020 . baaa091.

Wang, Y., Xu, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Zhou, Y., Wallwork, H., Zhou, G., Broughton, S., Zhang, X-Q, Tan, C., Westcott, S., Moody, D., Sun, D., Loughman, R., Zhang, W. and Li, C. (2020) Fine mapping QSc.VR4, an effective and stable scald resistance locus in barley (Hordeum vulgare L.), to a 0.38-Mb region enriched with LRR-RLK and GLP genes. Theoretical and Applied Genetics .

Watt, C., Zhou, G., McFawn, L-A and Li, C. (2020) Fine mapping qGL2H, a major locus controlling grain length in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 133 . pp. 2095-2103.

Luo, H., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhou, G., Zhang, X-Q and Li, C. (2020) Genome-wide association mapping reveals novel genes associated with coleoptile length in a worldwide collection of barley. BMC Plant Biology, 20 . Article number: 346.

Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Han, Y.ORCID: 0000-0001-6480-0398, Zhang, X-Q, Zhou, G., Hill, C.B.ORCID: 0000-0002-6754-5553, Chen, K., Angessa, T. and Li, C. (2020) Genome-wide association study and identification of candidate genes for nitrogen use efficiency in barley (Hordeum vulgare L.). Frontiers in Plant Science, 11 . Article 571912.

Mwando, E., Han, Y.ORCID: 0000-0001-6480-0398, Angessa, T.T., Zhou, G., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhang, X-Q and Li, C. (2020) Genome-wide association study of salinity tolerance during germination in barley (Hordeum vulgare L.). Frontiers in Plant Science, 11 . Article 118.

Watt, C., Zhou, G. and Li, C. (2020) Harnessing transcription factors as potential tools to enhance grain size under stressful abiotic conditions in cereal crops. Frontiers in Plant Science, 11 . Article 1273.

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., Ens, J., Zhang, X-Q, Angessa, T.T., Zhou, G., Tan, C., Hill, C.ORCID: 0000-0002-6754-5553, Wang, P., Schreiber, M., Boston, L.B., Plott, C., Jenkins, J., Guo, Y., Fiebig, A., Budak, H., Xu, D., Zhang, J., Wang, C., Grimwood, J., Schmutz, J., Guo, G., Zhang, G., Mochida, K., Hirayama, T., Sato, K., Chalmers, K.J., Langridge, P., Waugh, R., Pozniak, C.J., Scholz, U., Mayer, K.F.X., Spannagl, M., Li, C., Mascher, M. and Stein, N. (2020) The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588 . pp. 284-289.

Watt, C., Zhou, G., Angessa, T.T., Moody, D. and Li, C. (2020) A novel polymorphism in the 5′ UTR of HvDEP1 is associated with grain length and 1000-grain weight in barley (Hordeum vulgare). Crop and Pasture Science, 71 (8). pp. 752-759.

Tan, C., Zhang, X-Q, Wang, Y., Wu, D., Bellgard, M.I., Xu, Y., Shu, X., Zhou, G. and Li, C. (2019) Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq. BMC Genomics, 20 (1).

Watt, C., Zhou, G., McFawn, L-A, Chalmers, K.J. and Li, C. (2018) Fine mapping of qGL5H, a major grain length locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 132 (4). pp. 883-893.

Zou, M., Zhou, G., Angessa, T.T., Zhang, X-Q and Li, C. (2018) Polymorphism of floral type gene Cly1 and its association with thermal stress in barley. PLoS ONE, 13 (3).

Zhou, Y., Zhou, G., Broughton, S., Westcott, S., Zhang, X-Q, Xu, Y., Xu, L., Li, C. and Zhang, W. (2018) Towards the identification of a gene for prostrate tillers in barley (Hordeum vulgare L.). PLOS ONE, 13 (2). e0192263.

Xu, Y., Jia, Q., Zhou, G., Zhang, X-Q, Angessa, T., Broughton, S., Yan, G., Zhang, W. and Li, C. (2017) Characterization of the sdw1 semi-dwarf gene in barley. BMC Plant Biology, 17 (1).

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q, Barrero, R.A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G.J., Kersey, P., Clark, M.D., Caccamo, M., Schulman, A.H., Platzer, M., Close, T.J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. and Mascher, M. (2017) Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4 . Article number: 170044.

Zhou, G., Jian, J., Wang, P., Li, C., Tao, Y., Li, X., Renshaw, D., Clements, J., Sweetingham, M. and Yang, H. (2017) Construction of an ultra-high density consensus genetic map, and enhancement of the physical map from genome sequencing in Lupinus angustifolius. Theoretical and Applied Genetics . In Press.

Angessa, T.T., Zhang, X-Q, Zhou, G., Broughton, S., Zhang, W. and Li, C. (2017) Early growth stages salinity stress tolerance in CM72 x Gairdner doubled haploid barley population. PLoS ONE, 12 (6). e0179715.

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P.E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q, Zhang, Q., Barrero, R.A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G.J., Clark, M.D., Caccamo, M., Schulman, A.H., Mayer, K.F.X., Platzer, M., Close, T.J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. and Stein, N. (2017) A chromosome conformation capture ordered sequence of the barley genome. Nature, 544 (7651). pp. 427-433.

Zhang, Q., Zhang, X-Q, Pettolino, F., Zhou, G. and Li, C. (2016) Changes in cell wall polysaccharide composition, gene transcription and alternative splicing in germinating barley embryos. Journal of Plant Physiology, 191 . pp. 127-139.

Zhou, G., Broughton, S., Zhang, X-Q, Ma, Y., Zhou, M. and Li, C. (2016) Genome-Wide association mapping of acid soil resistance in barley (Hordeum vulgare L.). Frontiers in Plant Science, 7 .

Zhang, X., Zhou, G., Shabala, S., Koutoulis, A., Shabala, L., Johnson, P., Li, C. and Zhou, M. (2016) Identification of aerenchyma formation-related QTL in barley that can be effective in breeding for waterlogging tolerance. Theoretical and Applied Genetics, 129 (6). pp. 1167-1177.

Zhou, G., Zhang, Q., Zhang, X-Q, Tan, C. and Li, C. (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PloS one, 10 (7). e0133161.

Zhou, G., Zhang, Q., Tan, C., Zhang, X-Q and Li, C. (2015) Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map. BMC Genomics, 16 (1).

Broughton, S., Zhou, G., Teakle, N.L., Matsuda, R., Zhou, M., O’Leary, R.A., Colmer, T.D. and Li, C. (2015) Waterlogging tolerance is associated with root porosity in barley (Hordeum vulgare L.). Molecular Breeding, 35 . Article 27.

Bian, M., Jin, X., Broughton, S., Zhang, X-Q, Zhou, G., Zhou, M., Zhang, G., Sun, D. and Li, C. (2015) A new allele of acid soil tolerance gene from a malting barley variety. BMC Genetics, 16 (1).

Wang, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Wallwork, H., Zhang, X-Q, Zhou, G., Broughton, S., Loughman, R., Lance, R., Wu, D., Shu, X. and Li, C. (2014) Combination of seedling and adult plant resistance to leaf scald for stable resistance in barley. Molecular Breeding, 34 (4). pp. 2081-2089.

Yang, H, Tao, Y., Zheng, Z., Zhang, Q., Zhou, G., Sweetingham, M.W., Howieson, J.G. and Li, C. (2013) Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L. PLoS ONE, 8 (5). e64799.

Zhou, M., Johnson, P., Zhou, G., Li, C. and Lance, R. (2012) Quantitative trait loci for waterlogging tolerance in a Barley Cross of Franklin × YuYaoXiangTian Erleng and the relationship between waterlogging and salinity tolerance. Crop Science, 52 (5). p. 2082.

Li, L., Bian, L., Yakob, L., Zhou, G. and Yan, G. (2011) Analysing the generality of spatially predictive mosquito habitat models. Acta Tropica, 119 (1). pp. 30-37.

Non-refereed Article

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2020) A global barley panel revealing genomic signatures of breeding in modern cultivars. BioRxiv .

Book Chapter

Zhou, G., Zhou, M. and Li, C. (2016) Next-Generation Sequencing Technology: Implications for Barley Genetics and Breeding. In: Exploration, Identification and Utilization of Barley Germplasm. Academic Press is an imprint of Elsevier, pp. 265-280.