Publications: Zhang, Xiao-Qi

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., Ens, J., Zhang, X-Q, Angessa, T.T., Zhou, G., Tan, C., Hill, C.ORCID: 0000-0002-6754-5553, Wang, P., Schreiber, M., Boston, L.B., Plott, C., Jenkins, J., Guo, Y., Fiebig, A., Budak, H., Xu, D., Zhang, J., Wang, C., Grimwood, J., Schmutz, J., Guo, G., Zhang, G., Mochida, K., Hirayama, T., Sato, K., Chalmers, K.J., Langridge, P., Waugh, R., Pozniak, C.J., Scholz, U., Mayer, K.F.X., Spannagl, M., Li, C., Mascher, M. and Stein, N. (2020) The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588 . pp. 284-289.

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Alternative splicing of a barley gene results in an excess-tillering and semi-dwarf mutant. Theoretical and Applied Genetics . In Press.

Tan, C., Zhang, X-Q, Wang, Y., Wu, D., Bellgard, M.I., Xu, Y., Shu, X., Zhou, G. and Li, C. (2019) Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq. BMC Genomics, 20 (1).

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Correction to: Alternative splicing of a barley gene results in an excess‑tillering and semi‑dwarf mutant. Theoretical and Applied Genetics . In Press.

He, T.ORCID: 0000-0002-0924-3637, Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Moody, D., Telfer, P., Westcott, S. and Li, C. (2019) Gene-set association and epistatic analyses reveal complex gene interaction networks affecting flowering time in a worldwide barley collection. Journal of Experimental Botany, 70 (20). pp. 5603-5616.

Long, Z., Jia, Y., Tan, C., Zhang, X-Q, Angessa, T., Broughton, S., Westcott, S., Dai, F., Zhang, G., Sun, D., Xu, Y. and Li, C. (2019) Genetic mapping and evolutionary analyses of the black grain trait in barley. Frontiers in Plant Science, 9 .

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., McFawn, L-A, Wong, D., Tibbits, J., Zhang, X-Q, Forrest, K., Moody, D., Telfer, P., Westcott, S., Diepeveen, D.ORCID: 0000-0002-1535-8019, Xu, Y., Tan, C., Hayden, M. and Li, C. (2019) Hybridisation-based target enrichment of phenology genes to dissect the genetic basis of yield and adaptation in barley. Plant Biotechnology Journal, 17 (5). pp. 932-944.

Hill, C.B.ORCID: 0000-0002-6754-5553, Wong, D., Tibbits, J., Forrest, K., Hayden, M., Zhang, X-Q, Westcott, S., Angessa, T.T. and Li, C. (2019) Targeted enrichment by solution-based hybrid capture to identify genetic sequence variants in barley. Scientific Data, 6 . Article number: 12.

Xu, Y., Zhang, X-Q, Harasymow, S., Westcott, S., Zhang, W. and Li, C. (2018) Molecular marker-assisted backcrossing breeding: An example to transfer a thermostable β-amylase gene from wild barley. Molecular Breeding, 38 (5).

Zou, M., Zhou, G., Angessa, T.T., Zhang, X-Q and Li, C. (2018) Polymorphism of floral type gene Cly1 and its association with thermal stress in barley. PLoS ONE, 13 (3).

Zhou, Y., Zhou, G., Broughton, S., Westcott, S., Zhang, X-Q, Xu, Y., Xu, L., Li, C. and Zhang, W. (2018) Towards the identification of a gene for prostrate tillers in barley (Hordeum vulgare L.). PLOS ONE, 13 (2). e0192263.

Dai, F., Wang, X., Zhang, X-Q, Chen, Z., Nevo, E., Jin, G., Wu, D., Li, C. and Zhang, G. (2017) Assembly and analysis of a qingke reference genome demonstrate its close genetic relation to modern cultivated barley. Plant Biotechnology Journal, 16 (3). pp. 760-770.

Wang, R., Yang, F., Zhang, X-Q, Wu, D., Tan, C., Westcott, S., Broughton, S., Li, C., Zhang, W. and Xu, Y. (2017) Characterization of a Thermo-Inducible Chlorophyll-deficient mutant in barley. Frontiers in Plant Science, 8 .

Xu, Y., Jia, Q., Zhou, G., Zhang, X-Q, Angessa, T., Broughton, S., Yan, G., Zhang, W. and Li, C. (2017) Characterization of the sdw1 semi-dwarf gene in barley. BMC Plant Biology, 17 (1).

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q, Barrero, R.A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G.J., Kersey, P., Clark, M.D., Caccamo, M., Schulman, A.H., Platzer, M., Close, T.J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. and Mascher, M. (2017) Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4 . Article number: 170044.

Angessa, T.T., Zhang, X-Q, Zhou, G., Broughton, S., Zhang, W. and Li, C. (2017) Early growth stages salinity stress tolerance in CM72 x Gairdner doubled haploid barley population. PLoS ONE, 12 (6). e0179715.

Shang, Y., Yang, F., Schulman, A.H., Zhu, J., Jia, Y., Wang, J., Zhang, X-Q, Jia, Q., Hua, W., Yang, J. and Li, C. (2017) Gene Deletion in Barley Mediated by LTR-retrotransposon BARE. Scientific Reports, 7 .

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P.E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q, Zhang, Q., Barrero, R.A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G.J., Clark, M.D., Caccamo, M., Schulman, A.H., Mayer, K.F.X., Platzer, M., Close, T.J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. and Stein, N. (2017) A chromosome conformation capture ordered sequence of the barley genome. Nature, 544 (7651). pp. 427-433.

Zhang, Q., Zhang, X-Q, Pettolino, F., Zhou, G. and Li, C. (2016) Changes in cell wall polysaccharide composition, gene transcription and alternative splicing in germinating barley embryos. Journal of Plant Physiology, 191 . pp. 127-139.

Zhou, G., Broughton, S., Zhang, X-Q, Ma, Y., Zhou, M. and Li, C. (2016) Genome-Wide association mapping of acid soil resistance in barley (Hordeum vulgare L.). Frontiers in Plant Science, 7 .

Hua, W., Zhang, X-Q, Zhu, J., Shang, Y., Wang, J., Jia, Q., Zhang, Q., Yang, J. and Li, C. (2016) Identification and Fine Mapping of a White Husk Gene in Barley (Hordeum vulgare L.). PLoS ONE, 11 (3). e0152128.

Zhang, Q., Zhang, X-Q, Wang, S., Tan, C., Zhou, G. and Li, C. (2016) Involvement of alternative splicing in barley seed germination. PLoS ONE, 11 (3). Article e0152824.

Jia, Q., Tan, C., Wang, J., Zhang, X-Q, Zhu, J., Luo, H., Yang, J., Westcott, S., Broughton, S, Moody, D. and Li, C. (2016) Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley. BMC Genomics, 17 (1).

Zhou, G., Panozzo, J., Zhang, X-Q, Cakir, M., Harasymow, S. and Li, C. (2016) QTL mapping reveals genetic architectures of malting quality between Australian and Canadian malting barley (Hordeum vulgare L.). Molecular Breeding, 36 (6).

Zhou, G., Zhang, Q., Zhang, X-Q, Tan, C. and Li, C. (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PloS one, 10 (7). e0133161.

Zhou, G., Zhang, Q., Tan, C., Zhang, X-Q and Li, C. (2015) Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map. BMC Genomics, 16 (1).

Bian, M., Jin, X., Broughton, S., Zhang, X-Q, Zhou, G., Zhou, M., Zhang, G., Sun, D. and Li, C. (2015) A new allele of acid soil tolerance gene from a malting barley variety. BMC Genetics, 16 (1).

Wang, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Wallwork, H., Zhang, X-Q, Zhou, G., Broughton, S., Loughman, R., Lance, R., Wu, D., Shu, X. and Li, C. (2014) Combination of seedling and adult plant resistance to leaf scald for stable resistance in barley. Molecular Breeding, 34 (4). pp. 2081-2089.

Dai, H., Zhang, X-Q, Harasymow, S., Roumeliotis, S., Broughton, S., Eglinton, J., Wu, F. and Li, C. (2014) MALDI-TOF mass spectrometry provides an efficient approach to monitoring protein modification in the malting process. International Journal of Mass Spectrometry, 371 . pp. 8-16.

Ye, H., Harasymow, S., Zhang, X-Q, Paynter, B., Wu, D., Jones, M.ORCID: 0000-0001-5002-0227, Shu, X. and Li, C. (2014) Sequence variation and haplotypes of lipoxygenase gene LOX-1 in the Australian barley varieties. BMC Genetics, 15 . Article number: 36.

LÜ, R-H, Xu, Y., Boyd, R., Zhang, X-Q, Broughton, S., Jones, M.ORCID: 0000-0001-5002-0227, Li, C. and Chen, Y-F (2013) Barley and wheat share the same gene controlling the short basic vegetative period. Journal of Integrative Agriculture, 12 (10). pp. 1703-1711.

Bian, M., Waters, I., Broughton, S., Zhang, X-Q, Zhou, M., Lance, R., Sun, D. and Li, C. (2013) Development of gene-specific markers for acid soil/aluminium tolerance in barley (Hordeum vulgare L.). Molecular Breeding, 32 (1). pp. 155-164.

Gong, X., Westcott, S., Zhang, X-Q, Yan, G., Lance, R., Zhang, G., Sun, D. and Li, C. (2013) Discovery of novel Bmy1 alleles increasing β-amylase activity in Chinese landraces and Tibetan wild barley for improvement of malting quality via MAS. PLoS ONE, 8 (9). e72875.

Zhang, X-Q, Westcott, S., Panozzo, J., Cakir, M., Harasymow, S., Tarr, A., Broughton, S., Lance, R. and Li, C. (2012) Comparative analysis of Australian and Canadian barleys for seed dormancy and malting quality. Euphytica, 188 (1). pp. 103-111.

Ren, X., Li, C., Cakir, M., Zhang, W., Grime, C., Zhang, X-Q, Broughton, S, Sun, D. and Lance, R. (2012) A quantitative trait locus for long photoperiod response mapped on chromosome 4H in barley. Molecular Breeding, 30 (2). pp. 1121-1130.

Zhang, X-Q, Li, C., Panozzo, J., Westcott, S., Zhang, G., Tay, A., Appels, R., Jones, M.ORCID: 0000-0001-5002-0227 and Lance, R. (2011) Dissecting the telomere region of barley chromosome 5HL using rice genomic sequences as references: new markers for tracking a complex region in breeding. Molecular Breeding, 27 . pp. 1-9.

Jia, Q., Zhang, X-Q, Westcott, S., Broughton, S., Cakir, M., Yang, J., Lance, R. and Li, C. (2011) Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley. Theoretical and Applied Genetics, 122 (8). pp. 1451-1460.

Liu, F., Gupta, S.ORCID: 0000-0002-4948-4689, Zhang, X-Q, Jones, M.ORCID: 0000-0001-5002-0227, Loughman, R., Lance, R. and Li, C. (2011) PCR markers for selection of adult plant leaf rust resistance in barley (Hordeum vulgare L.). Molecular Breeding, 28 (4). pp. 657-666.

Ye, H., Zhang, X-Q, Broughton, S., Westcott, S., Wu, D., Lance, R. and Li, C. (2011) A nonsense mutation in a putative sulphate transporter gene results in low phytic acid in barley. Functional & Integrative Genomics, 11 (1). pp. 103-110.

Yang, X., Westcott, S., Gong, X., Evans, E., Zhang, X-Q, Lance, R.C.M. and Li, C. (2009) Amino acid substitutions of the limit dextrinase gene in barley are associated with enzyme thermostability. Molecular Breeding, 23 (1). pp. 61-74.

Jia, Q., Zhang, J.ORCID: 0000-0002-1623-4675, Westcott, S., Zhang, X-Q, Bellgard, M., Lance, R. and Li, C. (2009) GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional & Integrative Genomics, 9 (2). pp. 255-262.

Xue, D., Huang, Youzong, Zhang, X-Q, Wei, K., Westcott, S., Li, C., Chen, M., Zhang, G. and Lance, R. (2009) Identification of QTLs associated with salinity tolerance at late growth stage in barley. Euphytica, 169 (2). pp. 187-196.

Bonnardeaux, Y., Li, C., Lance, R., Zhang, X-Q, Sivasithamparam, K. and Appels, R. (2008) Seed dormancy in barley: identifying superior genotypes through incorporating epistatic interactions. Australian Journal of Agricultural Research, 59 (6). pp. 517-526.

Zhang, X-Q, Li, C., Tay, A., Lance, R., Mares, D., Cheong, J., Cakir, M., Ma, J. and Appels, R. (2008) A new PCR-based marker on chromosome 4AL for resistance to pre-harvest sprouting in wheat (Triticum aestivum L.). Molecular Breeding, 22 (2). pp. 227-236.

Zhang, X-Q and Powles, S.B. (2006) Six amino acid substitutions in the carboxyl-transferase domain of the plastidic acetyl-CoA carboxylase gene are linked with resistance to herbicides in a Lolium rigidum population. New Phytologist, 172 (4). pp. 636-645.

Zhang, X-Q and Powles, S.B. (2006) The molecular bases for resistance to acetyl co-enzyme A carboxylase (ACCase) inhibiting herbicides in two target-based resistant biotypes of annual ryegrass (Lolium rigidum). Planta, 223 (3). pp. 550-557.

Delye, C., Zhang, X-Q, Michel, S., Matéjicek, A. and Powles, S.B. (2005) Molecular bases for sensitivity to acetyl-coenzyme a carboxylase inhibitors in black-grass. Plant Physiology, 137 (3). pp. 794-806.

Maneechote, C., Samanwong, Somsak, Zhang, X-Q and Powles, S.B. (2005) Resistance to ACCase-inhibiting herbicides in sprangletop (Leptochloa chinensis). Weed Science, 53 (3). pp. 290-295.

Yu, Q., Friesen, L.J.S., Zhang, X-Q and Powles, S.B (2004) Tolerance to acetolactate synthase and acetyl-coenzyme A carboxylase inhibiting herbicides in Vulpia bromoides is conferred by two co-existing resistance mechanisms. Pesticide Biochemistry and Physiology, 78 (1). pp. 21-30.

Yu, Q., Zhang, X-Q, Hashem, A., Walsh, M.J. and Powles, S.B. (2003) ALS gene proline (197) mutations confer ALS herbicide resistance in eight separated wild radish (Raphanus raphanistrum) populations. Weed Science, 51 (06). pp. 831-838.

Délye, C., Zhang, X-Q, Chalopin, C., Michel, S. and Powles, S.B. (2003) An isoleucine residue within the carboxyl-transferase domain of multidomain acetyl-coenzyme A carboxylase is a major determinant of sensitivity to aryloxyphenoxypropionate but not to cyclohexanedione inhibitors. Plant Physiology, 132 (3). pp. 1716-1723.

Li, C., Langridge, P., Zhang, X-Q, Eckstein, P.E., Rossnagel, B.G., Lance, R.C.M., Lefol, E.B., Lu, M-Y, Harvey, B.L. and Scoles, G.J. (2002) Mapping of Barley (Hordeum vulgare L.) Beta -amylase Alleles in which an Amino Acid Substitution Determines Beta -amylase Isoenzyme Type and the Level of Free Beta -amylase. Journal of Cereal Science, 35 (1). pp. 39-50.

Li, C., Zhang, X-Q, Eckstein, P., Rossnagel, B.G. and Scoles, G.J. (1999) A polymorphic microsatellite in the limit dextrinase gene of barley (Hordeum vulgare L.). Molecular Breeding, 5 (6). pp. 569-577.

Non-refereed Article

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2020) A global barley panel revealing genomic signatures of breeding in modern cultivars. BioRxiv .

Conference Item

Limadinata, V., Liu, F., Gupta, S.ORCID: 0000-0002-4948-4689, Park, R., Platz, G., Zhang, X-Q, Westcott, S., Loughman, R., Lance, R. and Li, C. (2011) A gene or gene cluster controlling adult plant resistance to leaf rust on chromosome 5HS. In: 15th Australian Barley Technical Symposium, 18 - 21 September, Adelaide, Australia.

Zhang, X-Q (2007) Dissecting a region of barley chromosome 5HL using synteny with rice genomic sequences. In: 13th Australian Barley Technical Symposium, 26 - 30 August, Perth, Western Australia.

Book Chapter

Li, C., Gupta, S.ORCID: 0000-0002-4948-4689, Zhang, X-Q, Westcott, S., Yang, J., Park, R., Platz, G., Loughman, R. and Lance, R. (2012) A major QTL controlling adult plant resistance for barley leaf rust. In: Zhang, G., Li, C. and Liu, X., (eds.) Advance in Barley Sciences. Proceedings of 11th International Barley Genetics Symposium. Springer, pp. 285-300.

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Publications: Zhang, Xiao-Qi

Journal Article

Non-refereed Article

Conference Item

Book Chapter