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Publications: Varshney, Rajeev

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Journal Article

Mir, R.R., Choudhary, N., Bawa, V., Jan, S., Singh, B., Bhat, M.A., Paliwal, R., Kumar, A., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Allelic diversity, structural analysis, and Genome-Wide Association Study (GWAS) for yield and related traits using unexplored common bean (Phaseolus vulgaris L.) germplasm from Western Himalayas. Frontiers in Genetics, 11 . Art. 609603.

Raza, A., Tabassum, J., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology . In Press.

Saxena, R.K., Jiang, Y., Khan, A.W., Zhao, Y., Kumar Singh, V., Bohra, A., Sonappa, M., Rathore, A., Kumar, C.V.S., Saxena, K., Reif, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Characterization of heterosis and genomic prediction‐based establishment of heterotic patterns for developing better hybrids in pigeonpea. The Plant Genome . Early View.

Gangurde, S.S., Nayak, S.N., Joshi, P., Purohit, S., Sudini, H.K., Chitikineni, A., Hong, Y., Guo, B., Chen, X., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Comparative transcriptome analysis identified candidate genes for late leaf spot resistance and cause of defoliation in groundnut. International Journal of Molecular Sciences, 22 (9). Article 4491.

Singh, S., Kudapa, H., Garg, V. and Varshney, R.ORCID: 0000-0002-4562-9131 (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics, 22 . Article number: 289.

Zhao, C., He, L., Xia, H., Zhou, X., Geng, Y., Hou, L., Li, P., Li, G., Zhao, S., Ma, C., Tang, R., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, X. (2021) De novo full length transcriptome analysis of Arachis glabrata provides insights into gene expression dynamics in response to biotic and abiotic stresses. Genomics, 113 (3). pp. 1579-1588.

Srivastava, A.K., Saxena, D.R., Saabale, P.R., Raghuvanshi, K.S., Anandani, V.P., Singh, R.K., Sharma, O.P., Wasinikar, A.R., Sahni, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, N.P. and Dixit, G.P. (2021) Delineation of genotype-by-environment interactions for identification and validation of resistant genotypes in chickpea to fusarium wilt using GGE biplot. Crop Protection, 144 . Art. 105571.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Yu, J., Graner, A., Zhang, Q. and Sorrells, M.E. (2021) Designing future crops: Genomics-Assisted breeding comes of age. Trends in Plant Science, 26 (6). pp. 631-649.

Barmukh, R., Roorkiwal, M., Jaba, J., Chitikineni, A., Mishra, S.P., Sagurthi, S.R., Munghate, R., Sharma, H.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea ( Cicer arietinum L .). The Plant Genome, 14 (1). Art. e20071.

Jadhav, M.P., Patil, M.D., Hampannavar, M., S, V., Dattatreya, P., Shirasawa, K., Pasupuleti, J., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker‐assisted backcross breeding. Crop Science . In Press.

Kamdar, J.H., Jasani, M.D., Ajay, B.C., Rani, K., Manivannan, N., Vasanthi, R.P., Dobariya, K.L., Pandey, M.K., Janila, P., Radhakrishnan, T., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bera, S.K. (2021) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: An insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution, 68 (2). pp. 529-549.

Daudi, H., Shimelis, H., Mathew, I., Oteng‐Frimpong, R., Ojiewo, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution, 68 (2). pp. 581-604.

Yadav, O.P., Gupta, S.K., Govindaraj, M., Sharma, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Srivastava, R. and Mahala, R.S. (2021) Genetic gains in Pearl Millet in India: Insights into historic breeding strategies and future perspective. Frontiers in Plant Science, 12 . Art. 645038.

Valliyodan, B., Brown, A.V., Wang, J., Patil, G., Liu, Y., Otyama, P.I., Nelson, R.T., Vuong, T., Song, Q., Musket, T.A., Wagner, R., Marri, P., Reddy, S., Sessions, A., Wu, X., Grant, D., Bayer, P.E., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liu, X., Edwards, D., Xu, D., Joshi, T., Cannon, S.B. and Nguyen, H.T. (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data, 8 (1). Art. 50.

Bohra, A., Rathore, A., Gandham, P., Saxena, R.K., Satheesh Naik, S.J., Dutta, D., Singh, I.P., Singh, F., Rathore, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Genome-wide comparative transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043 during the floral bud development of pigeonpea. Functional & Integrative Genomics, 21 (2). pp. 251-263.

Thudi, M., Palakurthi, R., Schnable, J.C., Chitikineni, A., Dreisigacker, S., Mace, E., Srivastava, R.K., Satyavathi, C.T., Odeny, D., Tiwari, V.K., Lam, H-M, Hong, Y.B., Singh, V.K., Li, G., Xu, Y., Chen, X., Kaila, S., Nguyen, H., Sivasankar, S., Jackson, S.A., Close, T.J., Shubo, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology, 257 . Art. 153351.

Sinha, P., Singh, V.K., Bohra, A., Kumar, A., Reif, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics, 134 . pp. 1829-1843.

Kumar, J., Sen Gupta, D., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, S. (2021) Genomics‐assisted lentil breeding: Current status and future strategies. Legume Science . Art. e71.

Bohra, A., Prasad, G., Rathore, A., Saxena, R.K., Naik, S.J.S., Pareek, S., Jha, R., Pazhamala, L., Datta, D., Pandey, G., Tiwari, A., Maurya, A.K., Soren, K.R., Akram, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Global gene expression analysis of pigeonpea with male sterility conditioned by A 2 cytoplasm. The Plant Genome . Art. e20132.

Soni, P., Pandey, A.K., Nayak, S.N., Pandey, M.K., Tolani, P., Pandey, S., Sudini, H.K., Bajaj, P., Fountain, J.C., Singam, P., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Global transcriptome profiling identified transcription factors, biological process, and associated pathways for pre-harvest aflatoxin contamination in groundnut. Journal of Fungi, 7 (6). p. 413.

Jin, X., Zarco-Tejada, P.J., Schmidhalter, U., Reynolds, M.P., Hawkesford, M.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Yang, T., Nie, C., Li, Z., Ming, B., Xiao, Y., Xie, Y. and Li, S. (2021) High-Throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine, 9 (1). pp. 200-231.

Bellucci, E., Mario Aguilar, O., Alseekh, S., Bett, K., Brezeanu, C., Cook, D., De la Rosa, L., Delledonne, M., Dostatny, D.F., Ferreira, J.J., Geffroy, V., Ghitarrini, S., Kroc, M., Kumar Agrawal, S., Logozzo, G., Marino, M., Mary‐Huard, T., McClean, P., Meglič, V., Messer, T., Muel, F., Nanni, L., Neumann, K., Servalli, F., Străjeru, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vasconcelos, M.W., Zaccardelli, M., Zavarzin, A., Bitocchi, E., Frontoni, E., Fernie, A.R., Gioia, T., Graner, A., Guasch, L., Prochnow, L., Oppermann, M., Susek, K., Tenaillon, M. and Papa, R. (2021) The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems. The Plant Journal . Early View.

Bohra, A., Gandham, P., Rathore, A., Thakur, V., Saxena, R.K., Naik, S.J.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Identification of microRNAs and their gene targets in cytoplasmic male sterile and fertile maintainer lines of pigeonpea. Planta, 253 (2). Art. 59.

Kushwah, A., Bhatia, D., Singh, I., Thudi, M., Singh, G., Bindra, S., Vij, S., Gill, B.S., Bharadwaj, C., Singh, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Identification of stable heat tolerance QTLs using inter-specific recombinant inbred line population derived from GPF 2 and ILWC 292. PLoS ONE, 16 (8). Art. e0254957.

Bharadwaj, C., Tripathi, S., Soren, K.R., Thudi, M., Singh, R.K., Sheoran, S., Roorkiwal, M., Patil, B.S., Chitikineni, A., Palakurthi, R., Vemula, A., Rathore, A., Kumar, Y., Chaturvedi, S.K., Mondal, B., Shanmugavadivel, P.S., Srivastava, A.K., Dixit, G.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome, 14 (1). Art. e20076.

Li, W., Huang, L., Liu, N., Pandey, M.K., Chen, Y., Cheng, L., Guo, J., Yu, B., Luo, H., Zhou, X., Huai, D., Chen, W., Yan, L., Wang, X., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2021) Key regulators of sucrose metabolism identified through comprehensive comparative transcriptome analysis in peanuts. International Journal of Molecular Sciences, 22 (14). Art. 7266.

Jha, U.C., Nayyar, H., Palakurthi, R., Jha, R., Valluri, V., Bajaj, P., Chitikineni, A., Singh, N.P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) Major QTLs and potential candidate genes for heat stress tolerance identified in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 655103.

Sharma, V., Gupta, P., Priscilla, K., SharanKumar, S., Hangargi, B., Veershetty, A., Ramrao, D.P., Suresh, S., Narasanna, R., Naik, G.R., Kumar, A., Guo, B., Zhuang, W., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Kumar, R. (2021) Metabolomics intervention towards better understanding of plant traits. Cells, 10 (2). Article 346.

Getahun, T., Tesfaye, K., Fikre, A., Haileslassie, T., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular genetic diversity and population structure in Ethiopian chickpea germplasm accessions. Diversity, 13 (6). Art. 247.

Roorkiwal, M., Pandey, S., Thavarajah, D., Hemalatha, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular mechanisms and biochemical pathways for micronutrient acquisition and storage in legumes to support biofortification for nutritional security. Frontiers in Plant Science, 12 . Art. 682842.

Manchikatla, P.K., Kalavikatte, D., Mallikarjuna, B.P., Palakurthi, R., Khan, A.W., Jha, U.C., Bajaj, P., Singam, P., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) MutMap approach enables rapid identification of candidate genes and development of markers associated with early flowering and enhanced seed size in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 688694.

Thudi, M., Chen, Y., Pang, J., Kalavikatte, D., Bajaj, P., Roorkiwal, M., Chitikineni, A., Ryan, M.H., Lambers, H., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Novel genes and genetic loci associated with root morphological traits, phosphorus-acquisition efficiency and phosphorus-use efficiency in chickpea. Frontiers in Plant Science, 12 . Art. 636973.

Altman, A., Fan, L.J., Foyer, C., Cowling, W., Mittler, R., Qaim, M., Weber, A.P.M., Reynolds, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Fernie, A. (2021) Past and future milestones of plant breeding. Trends in Plant Science, 26 (6). pp. 530-538.

Ghatak, A., Chaturvedi, P., Bachmann, G., Valledor, L., Ramšak, Ž., Bazargani, M.M., Bajaj, P., Jegadeesan, S., Li, W., Sun, X., Gruden, K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Weckwerth, W. (2021) Physiological and proteomic signatures reveal mechanisms of superior drought resilience in Pearl Millet compared to wheat. Frontiers in Plant Science, 11 . Art. 600278.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W., Chitikineni, A., Lam, H-M, Hickey, L.T., Croser, J., Edwards, D., Farooq, M., Crossa, J., Weckwerth, W., Millar, A.H., Kumar, A., Bevan, M.W. and Siddique, K.H.M. (2021) Rapid delivery systems for future food security. Nature Biotechnology, 39 . pp. 1179-1181.

Fikre, A., Degefu, T., Geleta, T., Thudi, M., Gaur, P., Ojiewo, C., Hickey, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Rapid generation advance in chickpea for accelerated breeding gain in Ethiopia: What speed breeding imply? Ethiopian Journal of Agricultural Sciences, 31 (1).

Bhogireddy, S., Mangrauthia, S.K., Kumar, R., Pandey, A.K., Singh, S., Jain, A., Budak, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kudapa, H. (2021) Regulatory non-coding RNAs: A new frontier in regulation of plant biology. Functional & Integrative Genomics, 21 . pp. 313-330.

Ghatak, A., Schindler, F., Bachmann, G., Engelmeier, D., Bajaj, P., Brenner, M., Fragner, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Subbarao, G.V., Chaturvedi, P. and Weckwerth, W. (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils .

Bayer, P.E., Valliyodan, B., Hu, H.ORCID: 0000-0003-1070-213X, Marsh, J.I., Yuan, Y., Vuong, T.D., Patil, G., Song, Q., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lam, H‐M, Edwards, D. and Nguyen, H.T. (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome, Early View . e20109.

Srivastava, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Shukla, P. (2021) Sigma factor modulation for cyanobacterial metabolic engineering. Trends in Microbiology, 29 (3). pp. 266-277.

Parmar, S., Deshmukh, D.B., Kumar, R., Manohar, S.S., Joshi, P., Sharma, V., Chaudhari, S., Variath, M.T., Gangurde, S.S., Bohar, R., Singam, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Janila, P. and Pandey, M.K. (2021) Single seed-based high-throughput genotyping and rapid generation advancement for accelerated groundnut genetics and breeding research. Agronomy, 11 (6). Art. 1226.

Liu, H., Hu, D., Du, P., Wang, L., Liang, X., Li, H., Lu, Q., Li, S., Liu, H., Chen, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hong, Y. (2021) Single‐cell RNA‐seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut ( Arachis hypogaea L.). Plant Biotechnology Journal . Early View.

Zhang, S., Ghatak, A., Bazargani, M.M., Bajaj, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chaturvedi, P., Jiang, D. and Weckwerth, W. (2021) Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process. The Plant Journal .

Pazhamala, L.T., Kudapa, H., Weckwerth, W., Millar, A.H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Systems biology for crop improvement. The Plant Genome, 14 (2). Art. e20098.

Annabi, N., Baker, M., Boettiger, A., Chakraborty, D., Chen, Y., Corbett, K.S., Correia, B., Dahlman, J., de Oliveira, T., Ertuerk, A., Yanik, M.F., Henaff, E., Huch, M., Iliev, I.D., Jacobs, T., Junca, H., Keung, A., Kolodkin-Gal, I., Krishnaswamy, S., Lancaster, M., Macosko, E., Martínez-Núñez, M.A., Miura, K., Molloy, J., Cruz, A.O., Platt, R.J., Posey, A.D., Shao, H., Simunovic, M., Slavov, N., Takebe, T., Vandenberghe, L.H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, J. (2021) Voices of biotech research. Nature Biotechnology, 39 (3). pp. 281-286.

Xiao, Y., Liu, H., Li, H., Liu, Q., Lu, Q., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Hong, Y. (2021) Widely targeted metabolomics characterizes the dynamic changes of chemical profile in postharvest peanut sprouts grown under the dark and light conditions. LWT, 152 . Art. 112283.

Saxena, R.K., Hake, A., Bohra, A., Khan, A.W., Hingane, A., Sultana, R., Singh, I.P., Naik, S.J.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics, 134 (1). pp. 367-379.

Nguyen, D.T., Hayes, J.E., Atieno, J., Li, Y., Baumann, U., Pattison, A., Bramley, H., Hobson, K.A., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Colmer, T.D. and Sutton, T. (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics .

Varshney, R.K.ORCID: 0000-0002-4562-9131, Sinha, P., Singh, V.K., Kumar, A., Zhang, Q. and Bennetzen, J.L. (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology, 56 . pp. 190-196.

Ojiewo, C.O., Janila, P., Bhatnagar-Mathur, P., Pandey, M.K., Desmae, H., Okori, P., Mwololo, J., Ajeigbe, H., Njuguna-Mungai, E., Muricho, G., Akpo, E., Gichohi-Wainaina, W.N., Variath, M.T., Radhakrishnan, T., Dobariya, K.L., Bera, S.K., Rathnakumar, A.L., Manivannan, N., Vasanthi, R.P., Kumar, M.V.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Advances in crop improvement and delivery research for nutritional quality and health benefits of groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 11 . Art. 00029.

Akpo, E., Ojiewo, C.O., Melesse, M.B., Ganga Rao, N., Mwololo, J., Manyasa, E., Ojulong, H., Harawa, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Aggravated food insecurity in COVID-19 era: Quality seed flow of adapted and nutrient-dense varieties is central to the recovery equation in the drylands. Technium: Romanian Journal of Applied Sciences and Technology, 2 (5). pp. 62-65.

Géofroy, K., Gustave, D., Laura, E.Y.L., Relique, I.A., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Clément, A. and Alexandre, D. (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49.

Akpo, E., Feleke, G., Fikre, A., Chichaybelu, M., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Analyzing pathways of nurturing informal seed production into formal private ventures for sustainable seed delivery and crop productivity: Experiences from Ethiopia. Sustainability, 12 (17). Art. 6828.

Sinha, P., Bajaj, P., Pazhamala, L.T., Nayak, S.N., Pandey, M.K., Chitikineni, A., Huai, D., Khan, A.W., Desai, A., Jiang, H., Zhuang, W., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal, 18 (11). pp. 2187-2200.

Baisakh, N., Sachdeva, S., Bharadwaj, C., Singh, R.K., Jain, P.K., Patil, B.S., Roorkiwal, M. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLoS ONE, 15 (7). Art. e0234550.

Bhaskarla, V., Zinta, G., Ford, R., Jain, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mantri, N. (2020) Comparative root transcriptomics provide insights into drought adaptation strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences, 21 (5). Art. 1781.

Subramaniam, G., Thakur, V., Saxena, R.K., Vadlamudi, S., Purohit, S., Kumar, V., Rathore, A., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports, 10 (1). Art. 10294.

Zhang, Q., Xu, M., Xia, X., Komatsuda, T., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Shi, K. (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics, 133 (5). pp. 1339-1344.

Luo, H., Pandey, M.K., Zhi, Y., Zhang, H., Xu, S., Guo, J., Wu, B., Chen, H., Ren, X., Zhou, X., Chen, Y., Chen, W., Huang, L., Liu, N., Sudini, H.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lei, Y., Liao, B. and Jiang, H. (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics, 133 (4). pp. 1133-1148.

Liu, N., Huang, L., Chen, W., Wu, B., Pandey, M.K., Luo, H., Zhou, X., Guo, J., Chen, H., Huai, D., Chen, Y., Lei, Y., Liao, B., Ren, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars by association mapping. BMC Genomic Data . Under Review.

Liu, N., Huang, L., Chen, W., Wu, B., Pandey, M.K., Luo, H., Zhou, X., Guo, J., Chen, H., Huai, D., Chen, Y., Lei, Y., Liao, B., Ren, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics, 21 (1). Art. 60.

Agarwal, G., Kudapa, H., Ramalingam, A., Choudhary, D., Sinha, P., Garg, V., Singh, V.K., Patil, G.B., Pandey, M.K., Nguyen, H.T., Guo, B., Sunkar, R., Niederhuth, C.E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Functional & Integrative Genomics, 20 (6). pp. 739-761.

Mwalongo, S., Akpo, E., Lukurugu, G.A., Muricho, G., Vernooy, R., Minja, A., Ojiewo, C., Njuguna, E., Otieno, G. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Factors influencing preferences and adoption of improved groundnut varieties among farmers in Tanzania. Agronomy, 10 (9). Art. 1271.

Jaganathan, D., Bohra, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Fine mapping and gene cloning in the post-NGS era: Advances and prospect. Theoretical and Applied Genetics, 133 (5). pp. 1791-1810.

Soni, P., Gangurde, S.S., Ortega-Beltran, A., Kumar, R., Parmar, S., Sudini, H.K., Lei, Y., Ni, X., Huai, D., Fountain, J.C., Njoroge, S., Mahuku, G., Radhakrishnan, T., Zhuang, W., Guo, B., Liao, B., Singam, P., Pandey, M.K., Bandyopadhyay, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Functional biology and molecular mechanisms of Host-Pathogen interactions for Aflatoxin contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology, 11 . Art. 00227.

Rathnakumar, A.L., Manohar, S.S., Nadaf, H.L., Patil, S.C., Deshmukh, M.P., Thirumalaisamy, P.P., Kumar, N., Lalwani, H.B., Nagaraju, P., Yenagi, B., Patil, S.S., Suryawanshi, J., Khatod, J., Kumbhar, C.T., Kathmale, D.K., Naik, K.S.S., Rajesh, P., Vemana, K., Sundaravadana, S., Premalatha, N., Variath, M.T., Chaudhari, S., Radhakrishnan, T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Janila, P. (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica, 216 (6). Art. 85.

Soren, K.R., Madugula, P., Kumar, N., Barmukh, R., Sengar, M.S., Bharadwaj, C., Sharma, P.C., Singh, S., Bhandari, A., Singh, J., Sanwal, S.K., Pal, M., P.R., S.P., Mann, A., Sagurthi, S.R., Shanmugavadivel, P.S., Siddique, K.H.M., Singh, N.P., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences, 21 (14). Art. 5058.

Bohar, R., Chitkineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genetic molecular markers to accelerate genetic gains in crops. BioTechniques, 69 (3). pp. 158-160.

Sab, S., Lokesha, R., Mannur, D.M., Somasekhar, ., Jadhav, K., Mallikarjuna, B.P., Laxuman, C., Yeri, S., Valluri, V., Bajaj, P., Chitikineni, A., Vemula, A., Rathore, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Shankergoud, I. and Thudi, M. (2020) Genome-Wide SNP discovery and mapping QTLs for seed iron and zinc concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition, 7 . Art. 559120.

Pandey, M.K., Chaudhari, S., Jarquin, D., Janila, P., Crossa, J., Patil, S.C., Sundravadana, S., Khare, D., Bhat, R.S., Radhakrishnan, T., Hickey, J.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics, 133 (11). pp. 3101-3117.

Wang, X., Xu, P., Ren, Y., Yin, L., Li, S., Wang, Y., Shi, Y., Li, H., Cao, X., Chi, X., Yu, T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yuan, M. (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports, 10 (1). Art. 13792.

Bhogireddy, S., Xavier, A., Garg, V., Layland, N., Arias, R., Payton, P., Nayak, S.N., Pandey, M.K., Puppala, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports, 10 (1). Art. 4071.

Sinha, P., Singh, V.K., Saxena, R.K., Kale, S.M., Li, Y., Garg, V., Meifang, T., Khan, A.W., Kim, K.D., Chitikineni, A., Saxena, K.B., Sameer Kumar, C.V., Liu, X., Xu, X., Jackson, S., Powell, W., Nevo, E., Searle, I.R., Lodha, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal, 18 (8). pp. 1697-1710.

Huang, L., Liu, X., Pandey, M.K., Ren, X., Chen, H., Xue, X., Liu, N., Huai, D., Chen, Y., Zhou, X., Luo, H., Chen, W., Lei, Y., Liu, K., Xiao, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2020) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal, 18 (3). pp. 779-790.

Bohra, A., Chand Jha, U., Godwin, I.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal, 18 (12). pp. 2388-2405.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomics-assisted breeding comes of age in pulses in India. Journal of Food Legumes, 33 (2). pp. 69-70.

Bohra, A., Saxena, K.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Saxena, R.K. (2020) Genomics-assisted breeding for pigeonpea improvement. Theoretical and Applied Genetics, 133 (5). pp. 1721-1737.

Saxena, R.K., Kale, S., Mir, R.R., Mallikarjuna, N., Yadav, P., Das, R.R., Molla, J., Sonnappa, M., Ghanta, A., Narasimhan, Y., Rathore, A., Kumar, C.V.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics, 133 (3). pp. 737-749.

Liu, H., Liang, X., Lu, Q., Li, H., Liu, H., Li, S., Varshney, R.ORCID: 0000-0002-4562-9131, Hong, Y. and Chen, X. (2020) Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition. Scientific Reports, 10 (1). Art. 13050.

Saxena, R.K., Molla, J., Yadav, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) High resolution mapping of restoration of fertility (Rf) by combining large population and high density genetic map in pigeonpea [Cajanus cajan (L.) Millsp]. BMC Genomics, 21 (1). Art. 460.

Khan, S.A., Chen, H., Deng, Y., Chen, Y., Zhang, C., Cai, T., Ali, N., Mamadou, G., Xie, D., Guo, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics, 133 (7). pp. 2239-2257.

Gupta, S.K., Patil, K.S., Rathore, A., Yadav, D.V., Sharma, L.D., Mungra, K.D., Patil, H.T., Gupta, S.K., Kumar, R., Chaudhary, V., Das, R.R., Kumar, A., Singh, V., Srivastava, R.K., Gupta, R., Boratkar, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rai, K.N. and Yadav, O.P. (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics, 133 (3). pp. 873-888.

Pattanashetti, S.K., Pandey, M.K., Naidu, G.K., Vishwakarma, M.K., Singh, O.K., Shasidhar, Y., Boodi, I.H., Biradar, B.D., Das, R.R., Rathore, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Morris, B. (2020) Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut (Arachis hypogaea). Plant Breeding, 139 (4). pp. 790-803.

Yu, B., Jiang, H., Pandey, M.K., Huang, L., Huai, D., Zhou, X., Kang, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sudini, H.K., Ren, X., Luo, H., Liu, N., Chen, W., Guo, J., Li, W., Ding, Y., Jiang, Y., Lei, Y. and Liao, B. (2020) Identification of two novel peanut genotypes resistant to aflatoxin production and their SNP Markers associated with resistance. Toxins, 12 (3). Art. 156.

Pandey, M.K., Gangurde, S.S., Sharma, V., Pattanashetti, S.K., Naidu, G.K., Faye, I., Hamidou, F., Desmae, H., Kane, N.A., Yuan, M., Vadez, V., Nigam, S.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Improved genetic map identified major QTLs for drought tolerance- and iron deficiency tolerance-related traits in groundnut. Genes, 12 (1). Art. 37.

Shasidhar, Y., Variath, M.T., Vishwakarma, M.K., Manohar, S.S., Gangurde, S.S., Sriswathi, M., Sudini, H.K., Dobariya, K.L., Bera, S.K., Radhakrishnan, T., Pandey, M.K., Janila, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal, 8 (1). pp. 1-15.

Roorkiwal, M., Bharadwaj, C., Barmukh, R., Dixit, G.P., Thudi, M., Gaur, P.M., Chaturvedi, S.K., Fikre, A., Hamwieh, A., Kumar, S., Sachdeva, S., Ojiewo, C.O., Tar’an, B., Wordofa, N.G., Singh, N.P., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Integrating genomics for chickpea improvement: Achievements and opportunities. Theoretical and Applied Genetics, 133 (5). pp. 1703-1720.

Akpo, E., Muricho, G., Lukurugu, G.A., Opie, H., Ojiewo, C.O. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Legume seed production for sustainable seed supply and crop productivity: Case of groundnut in Tanzania and Uganda. Journal of Crop Improvement, 34 (4). pp. 518-539.

McCouch, S., Navabi, Z.K., Abberton, M., Anglin, N.L., Barbieri, R.L., Baum, M., Bett, K., Booker, H., Brown, G.L., Bryan, G.J., Cattivelli, L., Charest, D., Eversole, K., Freitas, M., Ghamkhar, K., Grattapaglia, D., Henry, R., Valadares Inglis, M.C., Islam, T., Kehel, Z., Kersey, P.J., King, G.J., Kresovich, S., Marden, E., Mayes, S., Ndjiondjop, M.No., Nguyen, H.T., Paiva, S.R., Papa, R., Phillips, P.W.B., Rasheed, A., Richards, C., Rouard, M., Amstalden Sampaio, M.J., Scholz, U., Shaw, P.D., Sherman, B., Staton, S.E., Stein, N., Svensson, J., Tester, M., Montenegro Valls, J.F., Varshney, R.ORCID: 0000-0002-4562-9131, Visscher, S., von Wettberg, E., Waugh, R., Wenzl, P. and Rieseberg, L.H. (2020) Mobilizing Crop Biodiversity. Molecular Plant, 13 (10). pp. 1341-1344.

Banerjee, A., Somani, V.K., Chakraborty, P., Bhatnagar, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Echeverría-Vega, A., Cuadros-Orellana, S. and Bandopadhyay, R. (2020) Molecular and Genomic Characterization of PFAB2: A Non-virulent Bacillus anthracis Strain Isolated from an Indian Hot Spring. Current Genomics, 20 (7). pp. 491-507.

Palit, P., Ghosh, R., Tolani, P., Tarafdar, A., Chitikineni, A., Bajaj, P., Sharma, M., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Molecular and physiological alterations in chickpea under elevated CO2 concentrations. Plant and Cell Physiology, 61 (8). pp. 1449-1463.

Sharma, V., Bhattacharyya, S., Kumar, R., Kumar, A., Ibañez, F., Wang, J., Guo, B., Sudini, H.K., Gopalakrishnan, S., DasGupta, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2020) Molecular basis of root nodule symbiosis between Bradyrhizobium and ‘Crack-Entry’ legume groundnut (Arachis hypogaea L.). Plants, 9 (2). Art. 276.

Scott, M.F., Ladejobi, O., Amer, S., Bentley, A.R., Biernaskie, J., Boden, S.A., Clark, M., Dell’Acqua, M., Dixon, L.E., Filippi, C.V., Fradgley, N., Gardner, K.A., Mackay, I.J., O’Sullivan, D., Percival-Alwyn, L., Roorkiwal, M., Singh, R.K., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Venturini, L., Whan, A., Cockram, J. and Mott, R. (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity, 125 (6). pp. 396-416.

Pazhamala, L.T., Chaturvedi, P., Bajaj, P., Srikanth, S., Ghatak, A., Chitikineni, A., Bellaire, A., Hingane, A., Kumar, C.V.S., Saxena, K.B., Weckwerth, W., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome, 13 (2). Art. e20028.

Peng, Z., Chen, H., Tan, L., Shu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Zhou, Z., Zhao, Z., Luo, Z., Chitikineni, A., Wang, L., Maku, J., López, Y., Gallo, M., Zhou, H., Wang, J. and Gifford, M. (2020) Natural polymorphisms in a pair of NSP2 homoeologs can cause loss of nodulation in peanut. Journal of Experimental Botany, 72 (4). pp. 1104-1118.

Gangurde, S.S., Wang, H., Yaduru, S., Pandey, M.K., Fountain, J.C., Chu, Y., Isleib, T., Holbrook, C.C., Xavier, A., Culbreath, A.K., Ozias‐Akins, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2020) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal, 18 (6). pp. 1457-1471.

Weckwerth, W., Ghatak, A., Bellaire, A., Chaturvedi, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) PANOMICS meets germplasm. Plant Biotechnology Journal, 18 (7). pp. 1507-1525.

Kumar, N., Bharadwaj, C., Soni, A., Sachdeva, S., Yadav, M.C., Pal, M., Soren, K.R., Meena, M.C., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Rana, M. (2020) Physio-morphological and molecular analysis for salt tolerance in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 90 (4). pp. 132-136.

Agarwal, G., Clevenger, J., Kale, S.M., Wang, H., Pandey, M.K., Choudhary, D., Yuan, M., Wang, X., Culbreath, A.K., Holbrook, C.C., Liu, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2020) Publisher Correction: A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports, 10 (1). Art.2244.

Zhuang, W., Wang, X., Paterson, A.H., Chen, H., Yang, M., Zhang, C., Sun, P., Zheng, Y., Wang, L., Xie, W., Chu, W., Fu, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Reply to: Evaluating two different models of peanut’s origin. Nature Genetics, 52 (6). pp. 560-563.

Obala, J., Saxena, R.K., Singh, V.K., Kale, S.M., Garg, V., Kumar, C.V.S., Saxena, K.B., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports, 10 (1). Art. 214.

Deshmukh, R., Rana, N., Liu, Y., Zeng, S., Agarwal, G., Sonah, H., Varshney, R.ORCID: 0000-0002-4562-9131, Joshi, T., Patil, G.B. and Nguyen, H.T. (2020) Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Physiologia Plantarum . Early View.

Santantonio, N., Atanda, S.A., Beyene, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Olsen, M., Jones, E., Roorkiwal, M., Gowda, M., Bharadwaj, C., Gaur, P.M., Zhang, X., Dreher, K., Ayala-Hernández, C., Crossa, J., Pérez-Rodríguez, P., Rathore, A., Gao, S.Y., McCouch, S. and Robbins, K.R. (2020) Strategies for effective use of genomic information in crop breeding programs serving Africa and South Asia. Frontiers in Plant Science, 11 . Art. 00353.

Khan, A.W., Garg, V., Roorkiwal, M., Golicz, A.A., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Super-Pangenome by integrating the wild side of a species for accelerated crop improvement. Trends in Plant Science, 25 (2). pp. 148-158.

Sinha, P., Singh, V.K., Saxena, R.K., Khan, A.W., Abbai, R., Chitikineni, A., Desai, A., Molla, J., Upadhyaya, H.D., Kumar, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal, 18 (12). pp. 2482-2490.

Zhao, J., Bayer, P.E., Ruperao, P., Saxena, R.K., Khan, A.W., Golicz, A.A., Nguyen, H.T., Batley, J., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Trait associations in the pangenome of pigeon pea (Cajanus cajan). Plant Biotechnology Journal, 18 (9). pp. 1946-1954.

Fountain, J.C., Pandey, A.K., Nayak, S.N., Bajaj, P., Wang, H., Kumar, V., Chitikineni, A., Abbas, H.K., Scully, B.T., Kemerait, R.C., Pandey, M.K., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Transcriptional responses of toxigenic and atoxigenic isolates of Aspergillus flavus to oxidative stress in aflatoxin-conducive and non-conducive media. World Mycotoxin Journal, 13 (4). pp. 443-457.

Soni, P., Nayak, S.N., Kumar, R., Pandey, M.K., Singh, N., Sudini, H.K., Bajaj, P., Fountain, J.C., Singam, P., Hong, Y., Chen, X., Zhuang, W., Liao, B., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Transcriptome analysis identified coordinated control of key pathways regulating cellular physiology and metabolism upon Aspergillus flavus infection resulting in reduced aflatoxin production in groundnut. Journal of Fungi, 6 (4). Art. 370.

Wan, L., Lei, Y., Yan, L., Liu, Y., Pandey, M.K., Wan, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Fang, J. and Liao, B. (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology, 20 (1). Art. 161.

Saxena, R.K., Hake, A., Hingane, A.J., Kumar, C.V.S., Bohra, A., Sonnappa, M., Rathore, A., Kumar, A.V., Mishra, A., Tikle, A.N., Sudhakar, C., Rajamani, S., Patil, D.K., Singh, I.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Translational Pigeonpea genomics consortium for accelerating genetic gains in Pigeonpea (Cajanus cajan L.). Agronomy, 10 (9). Art. 1289.

Pandey, M.K., Pandey, A.K., Kumar, R., Nwosu, C.V., Guo, B., Wright, G.C., Bhat, R.S., Chen, X., Bera, S.K., Yuan, M., Jiang, H., Faye, I., Radhakrishnan, T., Wang, X., Liang, X., Liao, B., Zhang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics, 133 (5). pp. 1679-1702.

Fountain, J.C., Clevenger, J.P., Nadon, B., Youngblood, R.C., Korani, W., Chang, P-K, Starr, D., Wang, H., Isett, B., Johnston, H.R., Wiggins, R., Agarwal, G., Chu, Y., Kemerait, R.C., Pandey, M.K., Bhatnagar, D., Ozias-Akins, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Scheffler, B.E., Vaughn, J.N. and Guo, B. (2020) Two new Aspergillus flavus reference genomes reveal a large insertion potentially contributing to isolate stress tolerance and aflatoxin production. G3 Genes|Genomes|Genetics, 10 (10). pp. 3515-3531.

Patel, K., Pachchigar, K.P., Saxena, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Bohra, A. (2020) Understanding molecular divergence and population structure of parental lines of CMS hybrids in pigeonpea. Journal of Food Legumes, 33 (2). pp. 82-92.

Molla, K.A., Karmakar, S., Molla, J., Bajaj, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Datta, S.K. and Datta, K. (2020) Understanding sheath blight resistance in rice: The road behind and the road ahead. Plant Biotechnology Journal, 18 (4). pp. 895-915.

Mir, R.R., Singh, U.M., Sinha, P., Dixit, S., Abbai, R., Venkateshwarlu, C., Chitikineni, A., Singh, V.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2020) Unraveling candidate genomic regions responsible for delayed leaf senescence in rice. PLoS ONE, 15 (10). Art. e0240591.

Kumar, R., Janila, P., Vishwakarma, M.K., Khan, A.W., Manohar, S.S., Gangurde, S.S., Variath, M.T., Shasidhar, Y., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Whole‐genome resequencing‐based QTL ‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal, 18 (4). pp. 992-1003.

Song, X., Sun, P., Yuan, J., Gong, K., Li, N., Meng, F., Zhang, Z., Li, X., Hu, J., Wang, J., Yang, Q., Jiao, B., Nie, F., Liu, T., Chen, W., Feng, S., Pei, Q., Yu, T., Kang, X., Zhao, W., Cui, C., Yu, Y., Wu, T., Shan, L., Liu, M., Qin, Z., Lin, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Li, X‐Q, Paterson, A.H. and Wang, X. (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal . Early View.

Palit, P., Kudapa, H., Zougmore, R., Kholova, J., Whitbread, A., Sharma, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22 . Art. 100149.

Jensen, S.E., Charles, J.R., Muleta, K., Bradbury, P. J., Casstevens, T., Deshpande, S.P., Gore, M.A., Gupta, R., Ilut, D.C., Johnson, L., Lozano, R., Miller, Z., Ramu, P., Rathore, A., Romay, M.C., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, Morris, G.P., Pressoir, G., Buckler, E.S. and Ramstein, G.P. (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome, 13 (1). Art. e20009.

Li, S., Zhu, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Zhan, J., Zheng, X., Shi, J., Wang, X., Liu, G. and Wang, H. (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal, 18 (2). pp. 568-580.

Liu, H., Pandey, M.K., Xu, Z., Rao, D., Huang, Z., Chen, M., Feng, D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hong, Y. (2019) Analysis and evaluation of quality traits of peanut varieties with near Infra-red spectroscopy technology. International Journal of Agriculture and Biology . pp. 1-8.

Yadav, P., Saxena, K.B., Hingane, A., Kumar, C.V.S., Kandalkar, V.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Saxena, R.K. (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics, 20 (1). Art. 235.

Saxena, K.B., Saxena, R.K., Hickey, L.T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Can a speed breeding approach accelerate genetic gain in pigeonpea? Euphytica, 215 (12). Art. 202.

Fountain, J.C., Yang, L., Pandey, M.K., Bajaj, P., Alexander, D., Chen, S., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology, 19 (1). Article 209.

Valliyodan, B., Cannon, S.B., Bayer, P.E., Shu, S., Brown, A.V., Ren, L., Jenkins, J., Chung, C.Y.L., Chan, T‐F, Daum, C.G., Plott, C., Hastie, A., Baruch, K., Barry, K.W., Huang, W., Patil, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Hu, H.ORCID: 0000-0003-1070-213X, Batley, J., Yuan, Y., Song, Q., Stupar, R.M., Goodstein, D.M., Stacey, G., Lam, H‐M, Jackson, S.A., Schmutz, J., Grimwood, J., Edwards, D. and Nguyen, H.T. (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal, 100 (5). pp. 1066-1082.

Sandhu, N., Subedi, S.R., Singh, V.K., Sinha, P., Kumar, S., Singh, S.P., Ghimire, S.K., Pandey, M., Yadaw, R.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports, 9 (1). Art. 9334.

Obala, J., Saxena, R.K., Singh, V.K., Kumar, C.V.S., Saxena, K.B., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics, 294 (1). pp. 57-68.

Luo, H., Pandey, M.K., Khan, A.W., Guo, J., Wu, B., Cai, Y., Huang, L., Zhou, X., Chen, Y., Chen, W., Liu, N., Lei, Y., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 17 (7). pp. 1248-1260.

Priya, M., Dhanker, O.P., Siddique, K.H.M., HanumanthaRao, B., Nair, R.M., Pandey, S., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vara Prasad, P.V. and Nayyar, H. (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics, 132 (6). pp. 1607-1638.

Yadav, S., Sandhu, N., Majumder, R.R., Dixit, S., Kumar, S., Singh, S.P., Mandal, N.P., Das, S.P., Yadaw, R.B., Singh, V.K., Sinha, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports, 9 (1). Art. 2616.

Obala, J., Saxena, R.K., Singh, V.K., Saxena, K., Kumar, C., Sameer, V., Kumar, A., Rathore, A., Pardhasaradhi, G., Patel, K., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genetic analysis of seed protein content and its association with seed weight and yield in pigeonpea. Journal of Food Legumes, 32 (2). pp. 65-69.

Khera, P., Pandey, M.K., Mallikarjuna, N., Sriswathi, M., Roorkiwal, M., Janila, P., Sharma, S., Shilpa, K., Sudini, H., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics, 294 (2). pp. 365-378.

Desmae, H., Janila, P., Okori, P., Pandey, M.K., Motagi, B.N., Monyo, E., Mponda, O., Okello, D., Sako, D., Echeckwu, C., Oteng‐Frimpong, R., Miningou, A., Ojiewo, C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Morris, B. (2019) Genetics, genomics and breeding of groundnut ( Arachis hypogaea L.). Plant Breeding, 138 (4). pp. 425-444.

Lu, Q., Hong, Y., Li, S., Liu, H., Li, H., Zhang, J., Lan, H., Liu, H., Li, X., Wen, S., Zhou, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Jiang, H., Chen, X. and Liang, X. (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics, 20 (1). Art. 799.

Jadhav, Y., Manohar, S.S., Sunkad, G., Kannalli, V.P., Pandey, M.K., Variath, M.T., Yaduru, S., Kona, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pasupuleti, J. (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding, 138 (6). pp. 748-760.

Ojiewo, C., Monyo, E., Desmae, H., Boukar, O., Mukankusi‐Mugisha, C., Thudi, M., Pandey, M.K., Saxena, R.K., Gaur, P.M., Chaturvedi, S.K., Fikre, A., Ganga Rao, N., Sameer Kumar, C.V., Okori, P., Janila, P., Rubyogo, J.C., Godfree, C., Akpo, E., Omoigui, L., Nkalubo, S., Fenta, B., Binagwa, P., Kilango, M., Williams, M., Mponda, O., Okello, D., Chichaybelu, M., Miningou, A., Bationo, J., Sako, D., Diallo, S., Echekwu, C., Umar, M.L., Oteng‐Frimpong, R., Mohammed, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ordon, F. (2019) Genomics, genetics and breeding of tropical legumes for better livelihoods of smallholder farmers. Plant Breeding, 138 (4). pp. 487-499.

Dodia, S.M., Joshi, B., Gangurde, S.S., Thirumalaisamy, P.P., Mishra, G.P., Narandrakumar, D., Soni, P., Rathnakumar, A.L., Dobaria, J.R., Sangh, C., Chitikineni, A., Chanda, S.V., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thankappan, R. (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics, 132 (4). pp. 1001-1016.

Abbai, R., Singh, V.K., Nachimuthu, V.V., Sinha, P., Selvaraj, R., Vipparla, A.K., Singh, A.K., Singh, U.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor‐made rice with enhanced genetic gains. Plant Biotechnology Journal, 17 (8). pp. 1612-1622.

Pandey, A.K., Sudini, H.K., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2019) Hypoallergen peanut lines identified through large-scale phenotyping of global diversity panel: Providing hope toward addressing one of the major global food safety concerns. Frontiers in Genetics, 10 . Art. 01177.

Yu, B., Huai, D., Huang, L., Kang, Y., Ren, X., Chen, Y., Zhou, X., Luo, H., Liu, N., Chen, W., Lei, Y., Pandey, M.K., Sudini, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics, 20 (1). Art. 32.

Parida, S.K., Jain, A., Roorkiwal, M., Kale, S., Garg, V., Yadala, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE, 14 (3). Art. e0213999.

Gaur, P.M., Samineni, S., Thudi, M., Tripathi, S., Sajja, S.B., Jayalakshmi, V., Mannur, D.M., Vijayakumar, A.G., Ganga Rao, N.V.P.R., Ojiewo, C., Fikre, A., Kimurto, P., Kileo, R.O., Girma, N., Chaturvedi, S.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Dixit, G.P. and Link, W. (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea ( Cicer arietinum L.). Plant Breeding, 138 (4). pp. 389-400.

Garg, V., Khan, A.W., Kudapa, H., Kale, S.M., Chitikineni, A., Qiwei, S., Sharma, M., Li, C., Zhang, B., Xin, L., Kishor, P.B.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal, 17 (5). pp. 914-931.

Rezaei, M.K., Deokar, A.A., Arganosa, G., Roorkiwal, M., Pandey, S.K., Warkentin, T.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tar′an, B. (2019) Mapping quantitative trait loci for carotenoid concentration in Three F 2 populations of Chickpea. The Plant Genome, 12 (3). Art. 190067.

Rubyogo, J‐C, Akpo, E., Omoigui, L., Pooran, G., Chaturvedi, S.K., Fikre, A., Haile, D., Hakeem, A., Monyo, E., Nkalubo, S., Fenta, B., Binagwa, P., Kilango, M., Williams, M., Mponda, O., Okello, D., Chichaybelu, M., Miningou, A., Bationo, J., Sako, D., Kouyate, Z., Diallo, S., Oteng‐Frimpong, R., Yirzagla, J., Iorlamen, T., Garba, U., Mohammed, H., Ojiewo, C., Kamara, A., Varshney, R.ORCID: 0000-0002-4562-9131, Nigam, S.N., Janila, P., Nadaf, H.L., Kalemera, S. and Downes, A. (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding, 138 (4). pp. 474-486.

Arbelaez, J.D., Tandayu, E., Reveche, M.Y., Jarana, A., van Rogen, P., Sandager, L., Stolt, P., Ng, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kretzschmar, T. and Cobb, J. (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods, 15 (1). Art. 78.

Pandey, M.K., Kumar, R., Pandey, A.K., Soni, P., Gangurde, S.S., Sudini, H.K., Fountain, J.C., Liao, B., Desmae, H., Okori, P., Chen, X., Jiang, H., Mendu, V., Falalou, H., Njoroge, S., Mwololo, J., Guo, B., Zhuang, W., Wang, X., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Mitigating aflatoxin contamination in groundnut through a combination of genetic resistance and post-harvest management practices. Toxins, 11 (6). Art. 315.

Choudhary, D., Agarwal, G., Wang, H., Pandey, M.K., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144.

Gumma, M.K., Tsusaka, T.W., Mohammed, I., Chavula, G., Ganga Rao, N.V.P.R., Okori, P., Ojiewo, C.O., Varshney, R.ORCID: 0000-0002-4562-9131, Siambi, M. and Whitbread, A. (2019) Monitoring changes in the cultivation of pigeonpea and groundnut in Malawi using time series satellite imagery for sustainable food systems. Remote Sensing, 11 (12). Article 1475.

Luo, H., Pandey, M.K., Khan, A.W., Wu, B., Guo, J., Ren, X., Zhou, X., Chen, Y., Chen, W., Huang, L., Liu, N., Lei, Y., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 17 (12). pp. 2356-2369.

Saxena, K., Choudhary, A.K., Srivastava, R.K., Bohra, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding, 138 (3). pp. 243-251.

Kumar, R., Pandey, M.K., Roychoudhry, S., Nayyar, H., Kepinski, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Peg biology: Deciphering the molecular regulations involved during peanut peg development. Frontiers in Plant Science, 10 . Art. 01289.

Chanda Venkata, S.K., Nadigatla Veera Prabha Rama, G.R., Saxena, R.K., Saxena, K., Upadhyaya, H.D., Siambi, M., Silim, S.N., Reddy, K.N., Hingane, A.J., Sharma, M., Sharma, S., Lyimo, S.D., Ubwe, R., Makenge, M., Gad, K., Kimurto, P.K., Amane, M., Kanenga, K., Obong, Y., Monyo, E., Ojiewo, C., Mallela Venkata, N.K., Polineni Rao, J., Lakkireddy, P., Chourat, S., Singh, I., Sajja, S., Hirikara Beliappa, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ordon, F. (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding, 138 (4). pp. 445-454.

Chigeza, G., Boahen, S., Gedil, M., Agoyi, E., Mushoriwa, H., Denwar, N., Gondwe, T., Tesfaye, A., Kamara, A., Alamu, O.E., Chikoye, D. and Varshney, R.ORCID: 0000-0002-4562-9131 (2019) Public sector soybean (Glycine max) breeding: Advances in cultivar development in the African tropics. Plant Breeding, 138 (4). pp. 455-464.

Choudhary, M., Wani, S.H., Kumar, P., Bagaria, P.K., Rakshit, S., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics, 19 (5). pp. 685-701.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H.D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A.W., Garg, V., Chitikineni, A., Xu, D., Gaur, P.M., Singh, N.P., Chaturvedi, S.K., Nadigatla, G.V.P.R., Krishnamurthy, L., Dixit, G.P., Fikre, A., Kimurto, P.K., Sreeman, S.M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H, Edwards, D., Polavarapu, K.K.B., Penmetsa, R.V., Crossa, J., Nguyen, H.T., Siddique, K.H.M., Colmer, T.D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. and Liu, X. (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics, 51 (5). pp. 857-864.

Zwart, R.S., Thudi, M., Channale, S., Manchikatla, P.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thompson, J.P. (2019) Resistance to Plant-Parasitic nematodes in chickpea: Current status and future perspectives. Frontiers in Plant Science, 10 . Art. 00966.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Godwin, I.D., Mohapatra, T., Jones, J.D.G. and McCouch, S.R. (2019) A SWEET solution to rice blight. Nature Biotechnology, 37 (11). pp. 1280-1282.

Chen, X., Lu, Q., Liu, H., Zhang, J., Hong, Y., Lan, H., Li, H., Wang, J., Liu, H., Li, S., Pandey, M.K., Zhang, Z., Zhou, G., Yu, J., Zhang, G., Yuan, J., Li, X., Wen, S., Meng, F., Yu, S., Wang, X., Siddique, K.H.M., Liu, Z-J, Paterson, A.H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2019) Sequencing of cultivated peanut, Arachis hypogaea, yields insights into genome evolution and oil improvement. Molecular Plant, 12 (7). pp. 920-934.

Prasad, M., Bera, S.K., Kamdar, J.H., Kasundra, S.V., Patel, S.V., Jasani, M.D., Maurya, A.K., Dash, P., Chandrashekar, A.B., Rani, K., Manivannan, N., Janila, P., Pandey, M.K., Vasanthi, R.P., Dobariya, K.L., Radhakrishnan, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLoS ONE, 14 (12). Art. e0226252.

Mannur, D.M., Babbar, A., Thudi, M., Sabbavarapu, M.M., Roorkiwal, M., Yeri, S.B., Bansal, V.P., Jayalakshmi, S.K., Singh Yadav, S., Rathore, A., Chamarthi, S.K., Mallikarjuna, B.P., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Super Annigeri 1 and improved JG 74: Two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding, 39 (1). Art. 2.

Godwin, I.D., Rutkoski, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hickey, L.T. (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics, 132 (3). pp. 555-557.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Bohra, A., Singh, V.K., Thudi, M. and Saxena, R.K. (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics, 132 (3). pp. 797-816.

Mahdavi Mashaki, K., Nasrollahnezhad Ghomi, A.A., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Transcription factors evaluation in a transcriptome analysis on Chickpea (Cicer arietinum L.) under drought stress. Journal of Crop Breeding, 11 (30). pp. 133-141.

Bohra, A., Bharadwaj, C., Radhakrishnan, T., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Translational genomics and molecular breeding for enhancing precision and efficiency in crop improvement programs: Some examples in legumes. Indian Journal of Genetics and Plant Breeding, 79 (01S). 227 -240.

Sachdeva, S., Bharadwaj, C., Singh, S., Roorkiwal, M., Sharma, V., Singh, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 89 (5). pp. 834-841.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Ojiewo, C. and Monyo, E. (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market‐demand to benefit smallholder farmers and empowerment of national programmes in sub‐Saharan Africa and South Asia. Plant Breeding, 138 (4). pp. 379-388.

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M.K., Zhang, C., Chang, W-C, Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C-N, Wang, J., Deng, Y., Wang, D., Khan, A.W., Yang, Q., Cai, T., Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S.A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P.B., Pan, R-L, Paterson, A.H., Wang, X., Ming, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics, 51 (5). pp. 865-876.

Bertioli, D.J., Jenkins, J., Clevenger, J., Dudchenko, O., Gao, D., Seijo, G., Leal-Bertioli, S.C.M., Ren, L., Farmer, A.D., Pandey, M.K., Samoluk, S.S., Abernathy, B., Agarwal, G., Ballén-Taborda, C., Cameron, C., Campbell, J., Chavarro, C., Chitikineni, A., Chu, Y., Dash, S., El Baidouri, M., Guo, B., Huang, W., Kim, K.D., Korani, W., Lanciano, S., Lui, C.G., Mirouze, M., Moretzsohn, M.C., Pham, M., Shin, J.H., Shirasawa, K., Sinharoy, S., Sreedasyam, A., Weeks, N.T., Zhang, X., Zheng, Z., Sun, Z., Froenicke, L., Aiden, E.L., Michelmore, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Holbrook, C.C., Cannon, E.K.S., Scheffler, B.E., Grimwood, J., Ozias-Akins, P., Cannon, S.B., Jackson, S.A. and Schmutz, J. (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics, 51 (5). pp. 877-884.

Pandey, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sudini, H.K. and Pandey, M.K. (2019) An improved Enzyme-Linked Immunosorbent Assay (ELISA) based protocol using seeds for detection of five major peanut allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8. Frontiers in Nutrition, 6 . Art. 00068.

Agarwal, G., Clevenger, J., Kale, S.M., Wang, H., Pandey, M.K., Choudhary, D., Yuan, M., Wang, X., Culbreath, A.K., Holbrook, C.C., Liu, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports, 9 (1). Art. 18246.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Pandey, M.K., Tardieu, F., Ojiewo, C., Vadez, V., Whitbread, A.M., Siddique, K.H.M., Nguyen, H.T., Carberry, P.S. and Bergvinson, D. (2018) Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy. Journal of Experimental Botany, 69 (13). pp. 3293-3312.

Mousavi-Derazmahalleh, M., Bayer, P.E., Hane, J.K., Valliyodan, B., Nguyen, H.T., Nelson, M.N., Erskine, W., Varshney, R.K.ORCID: 0000-0002-4562-9131, Papa, R. and Edwards, D. (2018) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment, 42 (1). pp. 6-19.

Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Upadhyaya, H.D., Vadez, V., Sharma, K.K., Bhatnagar, P., Sameer Kumar, C.V., Janila, P., Srinivasan, S., Sajja, S.B., Sharma, S., Thudi, M., Roorkiwal, M., Saxena, R., Pandey, M., Ranga Rao, G.V., Sharma, M., Sudini, H., Gopalakrishnan, G., Gang Rao, N.V.P.R., Fikre, A., Ojiewo, C., Shewayrga, H., Motagi, B.N. and Okori, P. (2018) Advances in food legumes research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47.

Bera, S.K., Manohar, S.S., Variath, M.T., Chaudhari, S., Yaduru, S., Thankappan, R., Narayana, M., Kurapati, S., Pandey, M.K., Sudini, H.K., Shanmugavel, S., Kulandaivelu, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pasupuleti, J. and Link, W. (2018) Assessing variability for disease resistance and nutritional quality traits in an interspecific collection of groundnut (Arachis hypogaea). Plant Breeding, 137 (6). pp. 883-894.

Saxena, K.B., Choudhary, A.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science, 68 (2). pp. 159-167.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Kumar, A., Powell, W. and Sorrells, M.E. (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology, 45 (Part. B). pp. 205-211.

Paul, P.J., Samineni, S., Sajja, S.B., Rathore, A., Das, R.R., Chaturvedi, S.K., Lavanya, G.R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica, 214 (2). Art. 27.

Khedikar, Y., Pandey, M.K., Sujay, V., Singh, S., Nayak, S.N., Klein-Gebbinck, H.W., Sarvamangala, C., Mukri, G., Garg, V., Upadhyaya, H.D., Nadaf, H.L., Gowda, M.V.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2018) Correction to: Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding, 38 (6). Article number: 78.

Lu, Q., Li, H., Hong, Y., Zhang, G., Wen, S., Li, X., Zhou, G., Li, S., Liu, H., Liu, H., Liu, Z., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Liang, X. (2018) Corrigendum: Genome sequencing and analysis of the peanut B-genome progenitor (Arachis ipaensis). Frontiers in Plant Science, 9 . Article 1099.

Saxena, R.K., Rathore, A., Bohra, A., Yadav, P., Das, R.R., Khan, A.W., Singh, V.K., Chitikineni, A., Singh, I.P., Kumar, C.V.S., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Development and application of High‐Density axiom cajanus SNP array with 56K SNPs to understand the genome architecture of released cultivars and founder genotypes. The Plant Genome, 11 (3). Art. 180005.

Gayathri, M., Shirasawa, K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Bhat, R.S. (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1). Art. 10.

Kaashyap, M., Ford, R., Kudapa, H., Jain, M., Edwards, D., Varshney, R.ORCID: 0000-0002-4562-9131 and Mantri, N. (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports, 8 . Article number: 4855.

Patil, G., Vuong, T.D., Kale, S., Valliyodan, B., Deshmukh, R., Zhu, C., Wu, X., Bai, Y., Yungbluth, D., Lu, F., Kumpatla, S., Shannon, J.G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal, 16 (11). pp. 1939-1953.

Sehgal, A., Sita, K., Siddique, K.H.M., Kumar, R., Bhogireddy, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, HanumanthaRao, B., Nair, R.M., Prasad, P.V.V. and Nayyar, H. (2018) Drought or/and Heat-Stress effects on seed filling in food crops: Impacts on functional biochemistry, seed yields, and nutritional quality. Frontiers in Plant Science, 9 . Art. 01705.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Wang, J., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y. and Xu, X. (2018) Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 36 (4). p. 368.

Choudhary, N., Bawa, V., Paliwal, R., Singh, B., Bhat, M.A., Mir, J.I., Gupta, M., Sofi, P.A., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mir, R.R. (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). Art. e0191700.

Anggraeni, T.D.A., Satyawan, D., Kang, Y.J., Ha, J., Kim, M.Y., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources: Characterization and Utilization, 16 (4). pp. 334-342.

Ye, H., Roorkiwal, M., Valliyodan, B., Zhou, L., Chen, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany, 69 (13). pp. 3267-3277.

Singh, S., Gupta, S.K., Thudi, M., Das, R.R., Vemula, A., Garg, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rathore, A., Pahuja, S.K. and Yadav, D.V. (2018) Genetic diversity patterns and heterosis prediction based on SSRs and SNPs in hybrid parents of Pearl Millet. Crop Science, 58 (6). pp. 2379-2390.

Pushpavalli, S.N.C.V.L., Yamini, K.N., Anuradha, ., Rajani, ., Kumar, G., Rani, C.S., Sudhakar, C., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, C.V.S. (2018) Genetic variability and correlation in pigeonpea genotypes. Electronic Journal of Plant Breeding, 9 (1). pp. 343-349.

Obala, J., Saxena, R.K., Singh, V.K., Vechalapu, S., Das, R., Rathore, A., Sameer Kumar, C.V., Saxena, K., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian Journal of Crop Science, 12 (12). pp. 1859-1865.

Ha, J., Shim, S., Lee, T., Kang, Y.J., Hwang, W.J., Jeong, H., Laosatit, K., Lee, J., Kim, S.K., Satyawan, D., Lestari, P., Yoon, M.Y., Kim, M.Y., Chitikineni, A., Tanya, P., Somta, P., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2018) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal, 17 (2). pp. 517-530.

Lu, Q., Li, H., Hong, Y., Zhang, G., Wen, S., Li, X., Zhou, G., Li, S., Liu, H., Liu, H., Liu, Z., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Liang, X. (2018) Genome sequencing and analysis of the peanut B-genome progenitor (Arachis ipaensis). Frontiers in Plant Science, 9 . Article 604.

Hima Kumari, P., Anil Kumar, S., Ramesh, K., Sudhakar Reddy, P., Nagaraju, M., Bhanu Prakash, A., Shah, T., Henderson, A., Srivastava, R., Rajasheker, G., Chitikineni, A., Varshney, R.ORCID: 0000-0002-4562-9131, Rathnagiri, P., Lakshmi Narasu, M. and Kavi Kishor, P. (2018) Genome-wide identification and analysis of arabidopsis sodium proton antiporter (NHX) and human sodium proton exchanger (NHE) homologs in Sorghum bicolor. Genes, 9 (5). Article 236.

Wang, X., Xu, P., Yin, L., Ren, Y., Li, S., Shi, Y., Alcock, T.D., Xiong, Q., Qian, W., Chi, X., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yuan, M. (2018) Genomic and transcriptomic analysis identified gene clusters and candidate genes for oil content in peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter, 36 (3). pp. 518-529.

Roorkiwal, M., Jarquin, D., Singh, M.K., Gaur, P.M., Bharadwaj, C., Rathore, A., Howard, R., Srinivasan, S., Jain, A., Garg, V., Kale, S., Chitikineni, A., Tripathi, S., Jones, E., Robbins, K.R., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports, 8 (1). Art. 11701.

Bharathi, A., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2018) Genotypic Diversity and Population Structure of ICRISAT Composite Collection of Finger Millet [Eleusine coracana (L.) Gaertn]. Trends in Biosciences, 11 (25). pp. 3369-3373.

Agarwal, G., Clevenger, J., Pandey, M.K., Wang, H., Shasidhar, Y., Chu, Y., Fountain, J.C., Choudhary, D., Culbreath, A.K., Liu, X., Huang, G., Wang, X., Deshmukh, R., Holbrook, C.C., Bertioli, D.J., Ozias-Akins, P., Jackson, S.A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal, 16 (11). pp. 1954-1967.

Garg, T., Mallikarjuna, B.P., Thudi, M., Samineni, S., Singh, S., Sandhu, J.S., Kaur, L., Singh, I., Sirari, A., Basandrai, A.K., Basandrai, D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica, 214 (3). Art. 45.

Bera, S.K., Kamdar, J.H., Kasundra, S.V., Dash, P., Maurya, A.K., Jasani, M.D., Chandrashekar, A.B., Manivannan, N., Vasanthi, R.P., Dobariya, K.L., Pandey, M.K., Janila, P., Radhakrishnan, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica, 214 (9). Art.162.

Foyer, C.H., Siddique, K.H.M., Tai, A.P.K., Anders, S., Fodor, N., Wong, F-L, Ludidi, N., Chapman, M.A., Ferguson, B.J., Considine, M.J., Zabel, F., Prasad, P.V.V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nguyen, H.T. and Lam, H-M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment, 42 (1). pp. 373-385.

Paul, P., Samineni, S., Thudi, M., Sajja, S., Rathore, A., Das, R., Khan, A., Chaturvedi, S., Lavanya, G., Varshney, R.ORCID: 0000-0002-4562-9131 and Gaur, P. (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences, 19 (8). Art. 2166.

Sachdeva, S., Bharadwaj, C., Sharma, V., Patil, B.S., Soren, K.R., Roorkiwal, M., Varshney, R.ORCID: 0000-0002-4562-9131 and Bhat, K.V. (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153.

Saxena, R.K., Patel, K., Sameer Kumar, C.V., Tyagi, K., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics, 131 (8). pp. 1605-1614.

Liang, Z., Gupta, S.K., Yeh, C-T, Zhang, Y., Ngu, D.W., Kumar, R., Patil, H.T., Mungra, K.D., Yadav, D.V., Rathore, A., Srivastava, R.K., Gupta, R., Yang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Schnable, P.S. and Schnable, J.C. (2018) Phenotypic data from inbred parents can improve genomic prediction in Pearl Millet hybrids. G3 Genes|Genomes|Genetics, 8 (7). pp. 2513-2522.

Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholová, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology, 18 (1). Art. 29.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Tuberosa, R. and Tardieu, F. (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany, 69 (13). pp. 3175-3179.

Fountain, J.C., Koh, J., Yang, L., Pandey, M.K., Nayak, S.N., Bajaj, P., Zhuang, W-J, Chen, Z-Y, Kemerait, R.C., Lee, R.D., Chen, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports, 8 (1). Art. 3430.

Prasad, M., Mahdavi Mashaki, K., Garg, V., Nasrollahnezhad Ghomi, A.A., Kudapa, H., Chitikineni, A., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE, 13 (6). Art. e0199774.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment, 41 (9). pp. 2209-2225.

Shirasawa, K., Bhat, R.S., Khedikar, Y.P., Sujay, V., Kolekar, R.M., Yeri, S.B., Sukruth, M., Cholin, S., Asha, B., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, M.V.C. (2018) Sequencing analysis of genetic loci for resistance for late leaf spot and rust in peanut (Arachis hypogaea L.). Frontiers in Plant Science, 9 . Art. 01727.

Paudel, D., Kannan, B., Yang, X., Harris-Shultz, K., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Altpeter, F. and Wang, J. (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports, 8 (1). Art. 14419.

Chaturvedi, S.K., Jha, S.K., Singh, N.P., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Technological and policy intervention for increasing chickpea production in India. Pulse India, 3 (1). pp. 7-12.

Mahdavi Mashaki, K., Nasrollahnezhad Ghomi, A.A., Thudi, M., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Transcriptome analysis of Iranian local chickpea in response to drought stress. Journal of Crop Breeding, 9 (24). pp. 1-9.

Singh, M., Sharma, S.K., Singh, B., Malhotra, N., Chandora, R., Sarker, A., Singh, K., Gupta, D. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Widening the genetic base of cultivated gene pool following introgression from wild Lens taxa. Plant Breeding, 137 (4). pp. 470-485.

Fikre, A., Korbu, L., Eshete, M., Bekele, D., Girma, N., Mohamed, R., Assefe, S., Admasu, D., Tilahun, G., Tesfaye, T., Kefelegn, N., Tadesse, T., Rezene, Y., Moges, Y., Kumar, S., Bishaw, Z., Guar, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ahmed, S. (2018) A decade of research progress in chickpea and lentil breeding and genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113.

Saxena, K.B., Saxena, R.K., Sharma, S., Sameer Kumar, C.V., Sultana, R., von Wettberg, E.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica, 214 (12). Art. 222.

Burgarella, C., Cubry, P., Kane, N.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mariac, C., Liu, X., Shi, C., Thudi, M., Couderc, M., Xu, X., Chitikineni, A., Scarcelli, N., Barnaud, A., Rhoné, B., Dupuy, C., François, O., Berthouly-Salazar, C. and Vigouroux, Y. (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution, 2 (9). pp. 1377-1380.

Nayak, S.N., Agarwal, G., Pandey, M.K., Sudini, H.K., Jayale, A.S., Purohit, S., Desai, A., Wan, L., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (1). Art. 9659.

Saxena, R.K., Obala, J., Sinjushin, A., Kumar, C.V.S., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784.

Luo, H., Ren, X., Li, Z., Xu, Z., Li, X., Huang, L., Zhou, X., Chen, Y., Chen, W., Lei, Y., Liao, B., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Guo, B., Jiang, X., Liu, F. and Jiang, H. (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (1). Art. 58.

Saxena, R.K., Singh, V.K., Kale, S.M., Tathineni, R., Parupalli, S., Kumar, V., Garg, V., Das, R.R., Sharma, M., Yamini, K.N., Muniswamy, S., Ghanta, A., Rathore, A., Kumar, C.V.S., Saxena, K.B., Kishor, P.B.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1). Art. 1911.

Rasheed, A., Hao, Y., Xia, X., Khan, A., Xu, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and He, Z. (2017) Crop breeding chips and genotyping platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064.

Pandey, M.K., Agarwal, G., Kale, S.M., Clevenger, J., Nayak, S.N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H.D., Vishwakarma, M.K., Leal-Bertioli, S., Liang, X., Bertioli, D.J., Guo, B., Jackson, S.A., Ozias-Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Development and evaluation of a high density genotyping ‘Axiom_Arachis’ array with 58 K SNPs for accelerating genetics and breeding in groundnut. Scientific Report, 7 (1). Art. 40577.

Roorkiwal, M., Jain, A., Kale, S.M., Doddamani, D., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal, 16 (4). pp. 890-901.

Iquebal, M.A., Soren, K.R., Gangwar, P., Shanmugavadivel, P.S., Aravind, K., Singla, D., Jaiswal, S., Jasrotia, R.S., Chaturvedi, S.K., Singh, N.P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rai, A. and Kumar, D. (2017) Discovery of putative herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Science, 8 . Art. 00958.

Halder, U., Banerjee, A., Chaudhry, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mantri, S. and Bandopadhyay, R. (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). Art. e00339-17.

Atieno, J., Li, Y., Langridge, P., Dowling, K., Brien, C., Berger, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Sutton, T. (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1). Art. 1300.

Sita, K., Sehgal, A., HanumanthaRao, B., Nair, R.M., Vara Prasad, P.V., Kumar, S., Gaur, P.M., Farooq, M., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nayyar, H. (2017) Food legumes and rising temperatures: Effects, adaptive functional mechanisms specific to reproductive growth stage and strategies to improve heat tolerance. Frontiers in Plant Science, 8 . Art. 01658.

Pazhamala, L.T., Purohit, S., Saxena, R.K., Garg, V., Krishnamurthy, L., Verdier, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054.

Pandey, M.K., Wang, H., Khera, P., Vishwakarma, M.K., Kale, S.M., Culbreath, A.K., Holbrook, C.C., Wang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2017) Genetic dissection of novel QTLs for resistance to leaf spots and tomato spotted wilt virus in peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 . Art. 00025.

Zhao, J., Huang, L., Ren, X., Pandey, M.K., Wu, B., Chen, Y., Zhou, X., Chen, W., Xia, Y., Li, Z., Luo, H., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2017) Genetic variation and association mapping of seed-related traits in cultivated peanut (Arachis hypogaea L.) using single-locus simple sequence repeat markers. Frontiers in Plant Science, 8 . Art. 3389.

Xia, Y., Li, R., Bai, G., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Baum, M., Yan, G. and Guo, P. (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (1). Art. 7870.

Parupalli, S., Saxena, R.K., Sameer Kumar, C.V., Sharma, M., Singh, V.K., Vechalapu, S., Kavikishor, P.B., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244.

Vishwakarma, M.K., Kale, S.M., Sriswathi, M., Naresh, T., Shasidhar, Y., Garg, V., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genome-Wide discovery and deployment of insertions and deletions markers provided greater insights on species, genomes, and sections relationships in the Genus Arachis. Frontiers in Plant Science, 8 . Art. 02064.

Zhao, C., Qiu, J., Agarwal, G., Wang, J., Ren, X., Xia, H., Guo, B., Ma, C., Wan, S., Bertioli, D.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Wang, X. (2017) Genome-Wide discovery of microsatellite markers from diploid progenitor species, Arachis duranensis and A. ipaensis, and their application in cultivated peanut (A. hypogaea). Frontiers in Plant Science, 8 . Art. 01209.

Garg, V., Agarwal, G., Pazhamala, L.T., Nayak, S.N., Kudapa, H., Khan, A.W., Doddamani, D., Sharma, M., Kavi Kishor, P.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genome-Wide identification, characterization, and expression analysis of small RNA biogenesis purveyors reveal their role in regulation of biotic stress responses in three legume crops. Frontiers in Plant Science, 8 . Art. 00488.

Clevenger, J., Chu, Y., Chavarro, C., Agarwal, G., Bertioli, D.J., Leal-Bertioli, S.C.M., Pandey, M.K., Vaughn, J., Abernathy, B., Barkley, N.A., Hovav, R., Burow, M., Nayak, S.N., Chitikineni, A., Isleib, T.G., Holbrook, C.C., Jackson, S.A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ozias-Akins, P. (2017) Genome-wide SNP genotyping resolves signatures of selection and tetrasomic recombination in peanut. Molecular Plant, 10 (2). pp. 309-322.

Lin, Y., Min, J., Lai, R., Wu, Z., Chen, Y., Yu, L., Cheng, C., Jin, Y., Tian, Q., Liu, Q., Liu, W., Zhang, C., Lin, L., Hu, Y., Zhang, D., Thu, M., Zhang, Z., Liu, S., Zhong, C., Fang, X., Wang, J., Yang, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Yin, Y. and Lai, Z. (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14.

Crossa, J., Pérez-Rodríguez, P., Cuevas, J., Montesinos-López, O., Jarquin, D., de los Campos, G., Burgueño, J., González-Camacho, J.M., Pérez-Elizalde, S., Beyene, Y., Dreisigacker, S., Singh, R., Zhang, X., Gowda, M., Roorkiwal, M., Rutkoski, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genomic selection in plant breeding: Methods, models, and perspectives. Trends in Plant Science, 22 (11). pp. 961-975.

Purushothaman, R., Krishnamurthy, L., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44 (2). pp. 235-252.

Saxena, R.K., Kale, S.M., Kumar, V., Parupali, S., Joshi, S., Singh, V., Garg, V., Das, R.R., Sharma, M., Yamini, K.N., Ghanta, A., Rathore, A., Sameer Kumar, C.V., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1). Art. 1813.

Sharma, S., Pandey, M.K., Sudini, H.K., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Harnessing genetic diversity of Wild Arachis species for genetic enhancement of cultivated peanut. Crop Science, 57 (3). pp. 1121-1131.

Tardieu, F., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398.

Singh, V.K., Khan, A.W., Saxena, R.K., Sinha, P., Kale, S.M., Parupalli, S., Kumar, V., Chitikineni, A., Vechalapu, S., Sameer Kumar, C.V., Sharma, M., Ghanta, A., Yamini, K.N., Muniswamy, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 15 (7). pp. 906-914.

Pratap, A., Chaturvedi, S.K., Tomar, R., Rajan, N., Malviya, N., Thudi, M., Saabale, P.R., Prajapati, U., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics, 292 (6). pp. 1237-1245.

Mallikarjuna, B.P., Samineni, S., Thudi, M., Sajja, S.B., Khan, A.W., Patil, A., Viswanatha, K.P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2017) Molecular mapping of flowering time major genes and QTLs in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 . Art. 01140.

Shasidhar, Y., Vishwakarma, M.K., Pandey, M.K., Janila, P., Variath, M.T., Manohar, S.S., Nigam, S.N., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular mapping of oil content and fatty acids using dense genetic maps in groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 . Art. 00794.

Sachdeva, S., Bharadwaj, C., Sharma, V., Kumar, N., Bhat, K.V., Patil, B.S., Soren, K.R., Chaturvedi, S.K., Roorkiwal, M., Chauhan, S.K. and Varshney, R.ORCID: 0000-0002-4562-9131 (2017) Morpho-physiological grouping of chickpea (Cicerarietinum L.) genotypes on the basis of their response to drought stress. International Journal of Tropical Agriculture, 35 (1). pp. 5-13.

Bohra, A., Jha, R., Pandey, G., Patil, P.G., Saxena, R.K., Singh, I.P., Singh, D., Mishra, R.K., Mishra, A., Singh, F., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2017) New hypervariable SSR markers for diversity analysis, hybrid purity testing and trait mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 . Art. 00377.

Kumari, P.H., Kumar, S.A., Sivan, P., Katam, R., Suravajhala, P., Rao, K.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kishor, P.B.K. (2017) Overexpression of a plasma membrane bound Na+/H+ Antiporter-Like Protein (SbNHXLP) confers salt tolerance and improves fruit yield in tomato by maintaining Ion homeostasis. Frontiers in Plant Science, 7 . Art. 02027.

Thudi, M., Roorkiwal, M., Kudapa, H., Chaturvedi, S.K., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Wang, J., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y. and Xu, X. (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 35 (10). pp. 969-976.

Saxena, R.K., Sameer Kumar, C.V., Bohra, A., Singh, I.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Pigeonpea research for enhancing crop productivity. Pulse India, 2 (7). pp. 8-10.

Pandey, M.K., Khan, A.W., Singh, V.K., Vishwakarma, M.K., Shasidhar, Y., Kumar, V., Garg, V., Bhat, R.S., Chitikineni, A., Janila, P., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal, 15 (8). pp. 927-941.

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Root traits confer grain yield advantages under terminal drought in chickpea ( Cicer arietinum L.). Field Crops Research, 201 . pp. 146-161.

Zongo, A., Khera, P., Sawadogo, M., Shasidhar, Y., Sriswathi, M., Vishwakarma, M.K., Sankara, P., Ntare, B.R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Desmae, H. (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15 . pp. 132-137.

Saxena, K., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Prasad, M. (2017) Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea. Plant Breeding, 136 (6). pp. 954-957.

Devasena, N., Anitha, B.K., Manivannan, N., Nallathambi, G., Janila, P., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Validation of SSR markers linked to oil content in groundnut (Arachis hypogaea L.). Journal of Oilseeds Research, 34 (2). pp. 70-75.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K., Upadhyaya, H.D., Khan, A.W., Yu, Y., Kim, C., Rathore, A., Kim, D., Kim, J., An, S., Kumar, V., Anuradha, G., Yamini, K.N., Zhang, W., Muniswamy, S., Kim, J-S, Penmetsa, R.V., von Wettberg, E. and Datta, S.K. (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics, 49 (7). pp. 1082-1088.

Hradilová, I., Trněný, O., Válková, M., Cechová, M., Janská, A., Prokešová, L., Aamir, K., Krezdorn, N., Rotter, B., Winter, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Soukup, A., Bednář, P., Hanáček, P. and Smýkal, P. (2017) A combined comparative transcriptomic, metabolomic, and anatomical analyses of two key domestication traits: Pod dehiscence and seed dormancy in pea (Pisum sp.). Frontiers in Plant Science, 8 . Art. 00542.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Hickey, J.M., Xun, X., Marshall, D.F., Wang, J., Edwards, D. and Ribaut, J-M (2016) Analytical and decision support tools for Genomics-Assisted Breeding. Trends in Plant Science, 21 (4). pp. 354-363.

Jacob, S., Sajjalaguddam, R.R., Kumar, K.V.K., Varshney, R.ORCID: 0000-0002-4562-9131 and Sudini, H.K. (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology, 82 (2). pp. 96-104.

Williams, A.H., Sharma, M., Thatcher, L.F., Azam, S., Hane, J.K., Sperschneider, J., Kidd, B.N., Anderson, J.P., Ghosh, R., Garg, G., Lichtenzveig, J., Kistler, H.C., Shea, T., Young, S., Buck, S-A.G., Kamphuis, L.G., Saxena, R., Pande, S., Ma, L-J, Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, K.B. (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (1). Art. 191.

Ghatak, A., Chaturvedi, P., Nagler, M., Roustan, V., Lyons, D., Bachmann, G., Postl, W., Schröfl, A., Desai, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Weckwerth, W. (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143 . pp. 122-135.

Parida, S.K., Pazhamala, L.T., Agarwal, G., Bajaj, P., Kumar, V., Kulshreshtha, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Deciphering transcriptional programming during pod and seed development using RNA-Seq in Pigeonpea (Cajanus cajan). PLoS ONE, 11 (10). Art. e0164959.

Huang, L., Ren, X., Wu, B., Li, X., Chen, W., Zhou, X., Chen, Y., Pandey, M.K., Jiao, Y., Luo, H., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (1). Art. 39478.

Punnuri, S.M., Wallace, J.G., Knoll, J.E., Hyma, K.E., Mitchell, S.E., Buckler, E.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, B.P. (2016) Development of a High‐Density linkage map and tagging leaf spot resistance in Pearl Millet using Genotyping‐by‐Sequencing markers. The Plant Genome, 9 (2).

Chen, X., Li, H., Pandey, M.K., Yang, Q., Wang, X., Garg, V., Li, H., Chi, X., Doddamani, D., Hong, Y., Upadhyaya, H., Guo, H., Khan, A.W., Zhu, F., Zhang, X., Pan, L., Pierce, G.J., Zhou, G., Krishnamohan, K.A.V.S., Chen, M., Zhong, N., Agarwal, G., Li, S., Chitikineni, A., Zhang, G-Q, Sharma, S., Chen, N., Liu, H., Janila, P., Li, S., Wang, M., Wang, T., Sun, J., Li, X., Li, C., Wang, M., Yu, L., Wen, S., Singh, S., Yang, Z., Zhao, J., Zhang, C., Yu, Y., Bi, J., Zhang, X., Liu, Z-J, Paterson, A.H., Wang, S., Liang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yu, S. (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790.

Banerjee, A., Halder, U., Chaudhry, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mantri, S. and Bandopadhyay, R. (2016) Draft genome sequence of the Nonpathogenic, thermotolerant, and exopolysaccharide-producing Bacillus anthracis Strain PFAB2 from Panifala hot water spring in West Bengal, India. Genome Announcements, 4 (6). Art. e01346-16.

Pandey, M.K., Roorkiwal, M., Singh, V.K., Ramalingam, A., Kudapa, H., Thudi, M., Chitikineni, A., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Emerging genomic tools for legume breeding: Current status and future prospects. Frontiers in Plant Science, 7 . Art. 00455.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Science, 242 . pp. 98-107.

Sreevidya, M., Gopalakrishnan, S., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95.

Kumar, V., Khan, A.W., Saxena, R.K., Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) First‐generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (8). pp. 1673-1681.

Pasupuleti, J., Pandey, M.K., Manohar, S.S., Variath, M.T., Nallathambi, P., Nadaf, H.L., Sudini, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, R. (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaeaL.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (3). pp. 355-366.

Smýkal, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Coyne, C.J., Domoney, C., Kejnovský, E. and Warkentin, T. (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280.

Sharma, M., Sengupta, A., Ghosh, R., Agarwal, G., Tarafdar, A., Nagavardhini, A., Pande, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (1). Art. 37353.

Roorkiwal, M., Rathore, A., Das, R.R., Singh, M.K., Jain, A., Srinivasan, S., Gaur, P.M., Chellapilla, B., Tripathi, S., Li, Y., Hickey, J.M., Lorenzo, A., Sutton, T., Crossa, J., Jannink, J-L and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome-Enabled prediction models for yield related traits in chickpea. Frontiers in Plant Science, 7 . Art. 01666.

Agarwal, G., Garg, V., Kudapa, H., Doddamani, D., Pazhamala, L.T., Khan, A.W., Thudi, M., Lee, S-H and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (7). pp. 1563-1577.

Janila, P., Variath, M.T., Pandey, M.K., Desmae, H., Motagi, B.N., Okori, P., Manohar, S.S., Rathnakumar, A.L., Radhakrishnan, T., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genomic tools in groundnut breeding program: Status and perspectives. Frontiers in Plant Science, 7 . Art. 00289.

Saxena, R.K., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511.

Abberton, M., Batley, J., Bentley, A., Bryant, J., Cai, H., Cockram, J., Costa de Oliveira, A., Cseke, L.J., Dempewolf, H., De Pace, C., Edwards, D., Gepts, P., Greenland, A., Hall, A.E., Henry, R., Hori, K., Howe, G.T., Hughes, S., Humphreys, M., Lightfoot, D., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortiz, R., Paterson, A.H., Tuberosa, R., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yano, M. (2016) Global agricultural intensification during climate change: A role for genomics. Plant Biotechnology Journal, 14 (4). pp. 1095-1098.

Saxena, K., Sameer Kumar, C.V., Hingane, A., Kumar, M.V.N., Vijaykumar, R., Saxena, R., Patil, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144.

Sameer Kumar, C.V., Wani, S.P., Nagesh Kumar, M.V., Jaganmohan Rao, P., Saxena, K.B., Hingane, A.J., Sudhakar, C., Pushpavalli, S.N.V.C.L., Yamini, K.N., Shruthi, H.B., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Hybrid Technology–a new vista in pigeonpea breeding. The Journal of Research PJTSAU, 44 (4). pp. 1-13.

Saxena, K.B., Sameer Kumar, C.V., Saxena, R.K., Vijaykumar, R., Singh, I.P., Hingane, A.J., Mula, M.G., Patil, S.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32.

Chen, W., Yao, Q., Patil, G.B., Agarwal, G., Deshmukh, R.K., Lin, L., Wang, B., Wang, Y., Prince, S.J., Song, L., Xu, D., An, Y.C., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2016) Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Frontiers in Plant Science, 7 . Art. 01044.

Sinha, P., Pazhamala, L.T., Singh, V.K., Saxena, R.K., Krishnamurthy, L., Azam, S., Khan, A.W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Identification and validation of selected universal stress protein domain containing drought-responsive genes in pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 6 . Art. 01065.

Vishwakarma, M.K., Pandey, M.K., Shasidhar, Y., Manohar, S.S., Nagesh, P., Janila, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Prasad, M. (2016) Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding, 135 (3). pp. 367-375.

Gaur, P.M., Singh, M.K., Samineni, S., Sajja, S.B., Jukanti, A.K., Kamatam, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209 (1). pp. 253-260.

Zhang, J., Khera, P., Pandey, M.K., Wang, H., Feng, S., Qiao, L., Culbreath, A.K., Kale, S., Wang, Jianping, Holbrook, C.C., Zhuang, W., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Mapping Quantitative Trait Loci of resistance to tomato spotted wilt virus and leaf spots in a recombinant inbred line population of peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLoS ONE, 11 (7). Art. e0158452.

Janila, P., Pandey, M.K., Shasidhar, Y., Variath, M.T., Sriswathi, M., Khera, P., Manohar, S.S., Nagesh, P., Vishwakarma, M.K., Mishra, G.P., Radhakrishnan, T., Manivannan, N., Dobariya, K.L., Vasanthi, R.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles ( ahFAD2A and ahFAD2B ) enhances oil quality in high and low oil containing peanut genotypes. Plant Science, 242 . pp. 203-213.

Varma Penmetsa, R., Carrasquilla‐Garcia, N., Bergmann, E.M., Vance, L., Castro, B., Kassa, M.T., Sarma, B.K., Datta, S., Farmer, A.D., Baek, J‐M, Coyne, C.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wettberg, E.J.B. and Cook, D.R. (2016) Multiple post‐domestication origins of kabuli chickpea through allelic variation in a diversification‐associated transcription factor. New Phytologist, 211 (4). pp. 1440-1451.

Foyer, C.H., Lam, H-M, Nguyen, H.T., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Colmer, T.D., Cowling, W., Bramley, H., Mori, T.A., Hodgson, J.M., Cooper, J.W., Miller, A.J., Kunert, K., Vorster, J., Cullis, C., Ozga, J.A., Wahlqvist, M.L., Liang, Y., Shou, H., Shi, K., Yu, J., Fodor, N., Kaiser, B.N., Wong, F-L, Valliyodan, B. and Considine, M.J. (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (8). Art. 16112.

Singh, V.K., Khan, A.W., Saxena, R.K., Kumar, V., Kale, S.M., Sinha, P., Chitikineni, A., Pazhamala, L.T., Garg, V., Sharma, M., Sameer Kumar, C.V., Parupalli, S., Vechalapu, S., Patil, S., Muniswamy, S., Ghanta, A., Yamini, K.N., Dharmaraj, P.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Next‐generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea ( C ajanus cajan ). Plant Biotechnology Journal, 14 (5). pp. 1183-1194.

Fountain, J.C., Bajaj, P., Pandey, M., Nayak, S.N., Yang, L., Kumar, V., Jayale, A.S., Chitikineni, A., Zhuang, W., Scully, B.T., Lee, R.D., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (1). Art. 38747.

Sameer Kumar, C.V., Singh, I.P., Vijay Kumar, R., Patil, S.B., Tathineni, R., Mula, M.G., Saxena, R.K., Hingane, A.J., Rathore, A., Ravinder Reddy, C.H., Nagesh Kumar, M.V., Sudhakar, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). pp. 8-10.

Kaoneka, S.R., Saxena, R.K., Silim, S.N., Odeny, D.A., Ganga Rao, N.V.P.R., Shimelis, H.A., Siambi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Léon, J. (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154.

Mula, M.G., Sameer Kumar, C.V., Ravinder Reddy, C.H., Monyo, E., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Pigeonpea seed systems in Asia. Legume Perspectives (11). pp. 44-45.

Kolekar, R.M., Sujay, V., Shirasawa, K., Sukruth, M., Khedikar, Y.P., Gowda, M.V.C., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156.

Singh, V.K., Khan, A.W., Jaganathan, D., Thudi, M., Roorkiwal, M., Takagi, H., Garg, V., Kumar, V., Chitikineni, A., Gaur, P.M., Sutton, T., Terauchi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal, 14 (11). pp. 2110-2119.

Kumar, C.V., Singh, I.P., Patil, S.B., Mula, M.G., Kumar, R.V., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Recent Advances in Pigeonpea [Cajanus cajan (l.) Millspaugh) Research. International Journal of Economic Plants, 3 (1). pp. 13-15.

Thudi, M., Chitikineni, A., Liu, X., He, W., Roorkiwal, M., Yang, W., Jian, J., Doddamani, D., Gaur, P.M., Rathore, A., Samineni, S., Saxena, R.K., Xu, D., Singh, N.P., Chaturvedi, S.K., Zhang, G., Wang, J., Datta, S.K., Xu, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (1). Art. 38636.

Fountain, J.C., Bajaj, P., Nayak, S.N., Yang, L., Pandey, M.K., Kumar, V., Jayale, A.S., Chitikineni, A., Lee, R.D., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Responses of Aspergillus flavus to oxidative stress are related to fungal development regulator, antioxidant enzyme, and secondary metabolite biosynthetic gene expression. Frontiers in Microbiology, 7 . Art. 02048.

Gumma, M.K., Charyulu Deevi, K., Mohammed, I.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P. and Whitbread, A.M. (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (8). pp. 1955-1972.

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea ( Cicer arietinum L.). Field Crops Research, 197 . pp. 10-27.

Saxena, R.K., Saxena, K.B., Sameer Kumar, C.V., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51.

Janila, P., Rupavatharam, S., Sameer Kumar, C.V., Samineni, S., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Technologies for Intensification of Production and Uses of Grain Legumes for Nutrition Security. Proceedings of the Indian National Science Academy, 82 . pp. 1541-1553.

Garg, R., Shankar, R., Thakkar, B., Kudapa, H., Krishnamurthy, L., Mantri, N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Bhatia, S. and Jain, M. (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (1). Art. 19228.

Wan, L., Li, B., Pandey, M.K., Wu, Y., Lei, Y., Yan, L., Dai, X., Jiang, H., Zhang, J., Wei, G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2016) Transcriptome analysis of a new peanut seed coat mutant for the physiological regulatory mechanism involved in seed coat cracking and pigmentation. Frontiers in Plant Science, 7 . Art. 01491.

Samineni, S., Kamatam, S., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461.

Thudi, M., Khan, A.W., Kumar, V., Gaur, P.M., Katta, K., Garg, V., Roorkiwal, M., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (S1). Art. 10.

Bertioli, D.J., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E.K.S., Liu, X., Gao, D., Clevenger, J., Dash, S., Ren, L., Moretzsohn, M.C., Shirasawa, K., Huang, W., Vidigal, B., Abernathy, B., Chu, Y., Niederhuth, C.E., Umale, P., Araújo, A.C.G., Kozik, A., Do Kim, K., Burow, M.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, X., Zhang, X., Barkley, N., Guimarães, P.M., Isobe, S., Guo, B., Liao, B., Stalker, H.T., Schmitz, R.J., Scheffler, B.E., Leal-Bertioli, S.C.M., Xun, X., Jackson, S.A., Michelmore, R. and Ozias-Akins, P. (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (4). pp. 438-446.

Gaur, P.M., Samineni, S., Tripathi, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308.

Wang, H., Khera, P., Huang, B., Yuan, M., Katam, R., Zhuang, W., Harris-Shultz, K., Moore, K.M., Culbreath, A.K., Zhang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Xie, L. and Guo, B. (2015) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465.

Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Cai, H., Cakir, M., Cseke, L.J., Cockram, J., de Oliveira, A.C., De Pace, C., Dempewolf, H., Ellison, S., Gepts, P., Greenland, A., Hall, A., Hori, K., Hughes, S., Humphreys, M.W., Iorizzo, M., Ismail, A.M., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortiz, R., Paterson, A.H., Simon, P.W., Tohme, J., Tuberosa, R., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wullschleger, S.D., Yano, M. and Prasad, M. (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science, 6 . Article 563.

Purushothaman, R., Thudi, M., Krishnamurthy, L., Upadhyaya, H.D., Kashiwagi, J., Gowda, C.L.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174 . pp. 1-11.

Sinha, P., Saxena, K.B., Saxena, R.K., Singh, V.K., Suryanarayana, V., Sameer Kumar, C.V., Katta, M.A.V.S.K., Khan, A.W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Association of nad7a Gene with cytoplasmic male sterility in pigeonpea. The Plant Genome, 8 (2). pp. 1-12.

Deokar, A.A., Kondawar, V., Kohli, D., Aslam, M., Jain, P.K., Karuppayil, S.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Srinivasan, R. (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46.

Roorkiwal, M., Thudi, M., Gaur, P.M., Upadhyaya, H.D., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives, 7 . pp. 7-9.

Doddamani, D., Khan, A.W., Katta, M.A.V.S.K., Agarwal, G., Thudi, M., Ruperao, P., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database, 2015 . Art. bav078.

Ali, L., Azam, S., Rubio, J., Kudapa, H., Madrid, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Castro, P., Chen, W., Gil, J. and Millan, T. (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485.

Srikanth, S., Saxena, R.K., Rao, M.V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mallikarjuna, N. (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (2). pp. 289-302.

Kang, Y.J., Satyawan, D., Shim, S., Lee, T., Lee, J., Hwang, W.J., Kim, S.K., Lestari, P., Laosatit, K., Kim, K.H., Ha, T.J., Chitikineni, A., Kim, M.Y., Ko, J-M, Gwag, J-G, Moon, J-K, Lee, Y-H, Park, B-S, Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (1). Art. 8069.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Evaluation of broad-spectrum Streptomyces sp. for plant growth promotion traits in Chickpea (Cicer arietinum L.). The Philippine Agricultural Scientist, 98 (3). pp. 270-278.

Ramalingam, A., Kudapa, H., Pazhamala, L.T., Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Gene Expression and yeast Two-Hybrid studies of 1R-MYB transcription factor mediating drought stress response in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 . Art. 01117.

Wang, M.L., Khera, P., Pandey, M.K., Wang, H., Qiao, L., Feng, S., Tonnis, B., Barkley, N.A., Pinnow, D., Holbrook, C.C., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2015) Genetic Mapping of QTLs controlling fatty acids provided insights into the genetic control of fatty acid synthesis pathway in peanut (Arachis hypogaea L.). PLoS ONE, 10 (4). Art. e0119454.

Yang, K., Tian, Z., Chen, C., Luo, L., Zhao, B., Wang, Z., Yu, L., Li, Y., Sun, Y., Li, W., Chen, Y., Li, Y., Zhang, Y., Ai, D., Zhao, J., Shang, C., Ma, Y., Wu, B., Wang, M., Gao, L., Sun, D., Zhang, P., Guo, F., Wang, W., Li, Y., Wang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, J., Ling, H-Q and Wan, P. (2015) Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proceedings of the National Academy of Sciences, 112 (43). pp. 13213-13218.

Saxena, R.K., Saxena, K.B., Pazhamala, L.T., Patel, K., Parupalli, S., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genomics for greater efficiency in pigeonpea hybrid breeding. Frontiers in Plant Science, 6 . Art. 00793.

Pazhamala, L., Saxena, R.K., Singh, V.K., Sameer Kumar, C.V., Kumar, V., Sinha, P., Patel, K., Obala, J., Kaoneka, S.R., Tongoona, P., Shimelis, H.A., Gangarao, N.V.P.R., Odeny, D., Rathore, A., Dharmaraj, P.S., Yamini, K.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 . Art. 00050.

Jaganathan, D., Thudi, M., Kale, S., Azam, S., Roorkiwal, M., Gaur, P.M., Kishor, P.B.K., Nguyen, H., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571.

Srivastava, S., Zheng, Y., Kudapa, H., Jagadeeswaran, G., Hivrale, V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Sunkar, R. (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235 . pp. 46-57.

Bayer, P.E., Ruperao, P., Mason, A.S., Stiller, J., Chan, C-K.K., Hayashi, S., Long, Y., Meng, J., Sutton, T., Visendi, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Batley, J. and Edwards, D. (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047.

Hong, Y., Pandey, M.K., Liu, Y., Chen, X., Liu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liang, X. and Huang, S. (2015) Identification and evaluation of Single-Nucleotide polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) based on Amplicon sequencing combined with High Resolution Melting (HRM) analysis. Frontiers in Plant Science, 6 . Art. 01068.

Agarwal, G., Sabbavarapu, M.M., Singh, V.K., Thudi, M., Sheelamary, S., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica, 205 (2). pp. 381-394.

Chen, H., Zhang, C., Cai, T.C., Deng, Y., Zhou, S., Zheng, Y., Ma, S., Tang, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2015) Identification of low Ca2+stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnology Journal, 14 (2). pp. 682-698.

Faye, I., Pandey, M.K., Hamidou, F., Rathore, A., Ndoye, O., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647.

Hickey, J.M., Gorjanc, G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nettelblad, C. (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov Model. Crop Science, 55 (5). pp. 1934-1946.

Smýkal, P., Coyne, C.J., Ambrose, M.J., Maxted, N., Schaefer, H., Blair, M.W., Berger, J., Greene, S.L., Nelson, M.N., Besharat, N., Vymyslický, T., Toker, C., Saxena, R.K., Roorkiwal, M., Pandey, M.K., Hu, J., Li, Y.H., Wang, L.X., Guo, Y., Qiu, Li J., Redden, R.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104.

Huang, B.E., Verbyla, K.L., Verbyla, A.P., Raghavan, C., Singh, V.K., Gaur, P., Leung, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Cavanagh, C.R. (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017.

Jadhav, A.A., Rayate, S.J., Mhase, L.B., Thudi, M., Chitikineni, A., Harer, P.N., Jadhav, A.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kulwal, P.L. (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics, 94 (2). pp. 279-286.

Khera, P., Saxena, R., Sameer Kumar, C.V., Saxena, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Mitochondrial SSRs and their utility in distinguishing wild species, CMS lines and maintainer lines in pigeonpea (Cajanus cajan L.). Euphytica, 206 (3). pp. 737-746.

Katta, M.A.V.S.K., Khan, A.W., Doddamani, D., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) NGS-QCbox and raspberry for parallel, automated and rapid quality control analysis of Large-Scale next generation sequencing (Illumina) data. PLoS ONE, 10 (10). Art. e0139868.

Gopalakrishnan, S., Sathya, A., Vijayabharathi, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, C.L.L. and Krishnamurthy, L. (2015) Plant growth promoting rhizobia: Challenges and opportunities. 3 Biotech, 5 (4). pp. 355-377.

Jenko, J., Gorjanc, G., Cleveland, M.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Whitelaw, C.B.A., Woolliams, J.A. and Hickey, J.M. (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (1). Art. 55.

Kale, S.M., Jaganathan, D., Ruperao, P., Chen, C., Punna, R., Kudapa, H., Thudi, M., Roorkiwal, M., Katta, M.A.V.S.K., Doddamani, D., Garg, V., Kishor, P.B.K., Gaur, P.M., Nguyen, H.T., Batley, J., Edwards, D., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports, 5 (1). Art. 15296.

Surender Reddy, P., Jogeswar, G., Rasineni, G.K., Maheswari, M., Reddy, A.R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kavi Kishor, P.B. (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94 . pp. 104-113.

Ramalingam, A., Kudapa, H., Pazhamala, L.T., Weckwerth, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Proteomics and metabolomics: Two emerging areas for legume improvement. Frontiers in Plant Science, 6 . Art. 01116.

Fountain, J.C., Khera, P., Yang, L., Nayak, S.N., Scully, B.T., Lee, R.D., Chen, Z-Y, Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237.

Kashiwagi, J., Krishnamurthy, L., Purushothaman, R., Upadhyaya, H.D., Gaur, P.M., Gowda, C.L.L., Ito, O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 . pp. 47-54.

Sinha, P., Saxena, R.K., Singh, V.K., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Selection and validation of housekeeping genes as reference for gene expression studies in Pigeonpea (Cajanus cajan) under heat and salt stress conditions. Frontiers in Plant Science, 6 . Art. 01071.

Chen, X., Yang, Q., Li, H., Li, H., Hong, Y., Pan, L., Chen, N., Zhu, F., Chi, X., Zhu, W., Chen, M., Liu, H., Yang, Z., Zhang, E., Wang, T., Zhong, N., Wang, M., Liu, H., Wen, S., Li, X., Zhou, G., Li, S., Wu, H., Varshney, R.ORCID: 0000-0002-4562-9131, Liang, X. and Yu, S. (2015) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaeaL.). Plant Biotechnology Journal, 14 (5). pp. 1215-1224.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kudapa, H., Pazhamala, L., Chitikineni, A., Thudi, M., Bohra, A., Gaur, P.M., Janila, P., Fikre, A., Kimurto, P. and Ellis, N. (2015) Translational genomics in agriculture: Some examples in grain legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194.

Pushpavalli, R., Krishnamurthy, L., Thudi, M., Gaur, P.M., Rao, M.V., Siddique, K.H.M., Colmer, T.D., Turner, N.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (1). Art. 124.

Sukruth, M., Paratwagh, S.A., Sujay, V., Kumari, V., Gowda, M.V.C., Nadaf, H.L., Motagi, B.N., Lingaraju, S., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (1). Art. 31.

Ojiewo, C., Keatinge, D.J.D.H., Hughes, J., Tenkouano, A., Nair, R., Varshney, R.ORCID: 0000-0002-4562-9131, Siambi, M., Monyo, E., Ganga-Rao, N.V.P.R. and Silim, S. (2015) The role of vegetables and legumes in assuring food, nutrition, and income security for vulnerable groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210.

Roorkiwal, M., Nayak, S.N., Thudi, M., Upadhyaya, H.D., Brunel, D., Mournet, P., This, D., Sharma, P.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 . Art. 00248.

Mir, R.R., Kudapa, H., Srikanth, S., Saxena, R.K., Sharma, A., Azam, S., Saxena, K., Varma Penmetsa, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678.

Doddamani, D., Katta, M.A.V.S.K., Khan, A.W., Agarwal, G., Shah, T.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (1). Art. 212.

Zhu, F., Han, J., Liu, S., Chen, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2014) Cloning, expression pattern analysis and subcellular localization of resveratrol synthase gene in peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 05 (24). pp. 3619-3631.

Zhu, W., Chen, X., Li, H., Zhu, F., Hong, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409.

Kudapa, H., Azam, S., Sharpe, A.G., Taran, B., Li, R., Deonovic, B., Cameron, C., Farmer, A.D., Cannon, S.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using Sanger and next generation sequencing platforms: Development and applications. PLoS ONE, 9 (1). Art. e86039.

Sharma, M., Nagavardhini, A., Thudi, M., Ghosh, R., Pande, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (1). Art.. 454.

Kumari, V., Gowda, M.V.C., Tasiwal, V., Pandey, M.K., Bhat, R.S., Mallikarjuna, N., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2-3). pp. 110-119.

Gaur, P., Srinivasan, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2014) Drought and heat tolerance in chickpea. Legume Perspectives (3). pp. 15-17.

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Lalitha, N., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2014) Enhancement of the use and impact of germplasm in crop improvement. Plant Genetic Resources, 12 (S1). S155-S159.

Gopalakrishnan, S., Vadlamudi, S., Bandikinda, P., Sathya, A., Vijayabharathi, R., Rupela, O., Kudapa, H., Katta, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169 (1). pp. 40-48.

Roorkiwal, M., von Wettberg, E.J., Upadhyaya, H.D., Warschefsky, E., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers. PLoS ONE, 9 (7). Art. e102016.

Thudi, M., Upadhyaya, H.D., Rathore, A., Gaur, P.M., Krishnamurthy, L., Roorkiwal, M., Nayak, S.N., Chaturvedi, S.K., Basu, P.S., Gangarao, N.V.P.R., Fikre, A., Kimurto, P., Sharma, P.C., Sheshashayee, M.S., Tobita, S., Kashiwagi, J., Ito, O., Killian, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches. PLoS ONE, 9 (5). Art. e96758.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Nayak, S.N., Gaur, P.M., Kashiwagi, J., Krishnamurthy, L., Jaganathan, D., Koppolu, J., Bohra, A., Tripathi, S., Rathore, A., Jukanti, A.K., Jayalakshmi, V., Vemula, A., Singh, S.J., Yasin, M., Sheshshayee, M.S. and Viswanatha, K.P. (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462.

Prasad, M., Saxena, R.K., von Wettberg, E., Upadhyaya, H.D., Sanchez, V., Songok, S., Saxena, K., Kimurto, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetic diversity and demographic history of Cajanus spp. illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). Art. e88568.

Kang, Y.J., Kim, S.K., Kim, M.Y., Lestari, P., Kim, K.H., Ha, B-K, Jun, T.H., Hwang, W.J., Lee, T., Lee, J., Shim, S., Yoon, M.Y., Jang, Y.E., Han, K.S., Taeprayoon, P., Yoon, N., Somta, P., Tanya, P., Kim, K.S., Gwag, J-G, Moon, J-K, Lee, Y-H, Park, B-S, Bombarely, A., Doyle, J.J., Jackson, S.A., Schafleitner, R., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (1). Art. 5443.

Wang, L., Yu, S., Tong, C., Zhao, Y., Liu, Y., Song, C., Zhang, Y., Zhang, X., Wang, Y., Hua, W., Li, D., Li, D., Li, F., Yu, J., Xu, C., Han, X., Huang, S., Tai, S., Wang, J., Xu, X., Li, Y., Liu, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, J. and Zhang, X. (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (2). Art. R39.

Afonso-Grunz, F., Molina, C., Hoffmeier, K., Rycak, L., Kudapa, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Drevon, J-J, Winter, P. and Kahl, G. (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science, 5 . Art. 00325.

Pandey, M.K., Upadhyaya, H.D., Rathore, A., Vadez, V., Sheshshayee, M.S., Sriswathi, M., Govil, M., Kumar, A., Gowda, M.V.C., Sharma, S., Hamidou, F., Kumar, V.A., Khera, P., Bhat, R.S., Khan, A.W., Singh, S., Li, H., Monyo, E., Nadaf, H.L., Mukri, G., Jackson, S.A., Guo, B., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomewide association studies for 50 agronomic traits in peanut using the ‘Reference Set’ comprising 300 genotypes from 48 countries of the Semi-Arid Tropics of the World. PLoS ONE, 9 (8). Art. e105228.

Millan, T., Madrid, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomic resources in chickpea. Legume Perspectives . pp. 12-14.

Lee, S-H, Tuberosa, R., Jackson, S.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics of plant genetic resources: A gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5.

Thudi, M., Gaur, P.M., Krishnamurthy, L., Mir, R.R., Kudapa, H., Fikre, A., Kimurto, P., Tripathi, S., Soren, K.R., Mulwa, R., Bharadwaj, C., Datta, S., Chaturvedi, S.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology, 41 (11). pp. 1178-1190.

Bohra, A., Pandey, M.K., Jha, U.C., Singh, B., Singh, I.P., Datta, D., Chaturvedi, S.K., Nadarajan, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics, 127 (6). pp. 1263-1291.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Terauchi, R. and McCouch, S.R. (2014) Harvesting the promising fruits of genomics: Applying genome sequencing technologies to crop breeding. PLoS Biology, 12 (6). Art. e1001883.

Wan, L., Wu, Y., Huang, J., Dai, X., Lei, Y., Yan, L., Jiang, H., Zhang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional & Integrative Genomics, 14 (3). pp. 467-477.

Pandey, M.K., Wang, M.L., Qiao, L., Feng, S., Khera, P., Wang, H., Tonnis, B., Barkley, N.A., Wang, J., Holbrook, C.C., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaeaL.). BMC Genetics, 15 (1). Art. 133.

Prasad, M., Azam, S., Rathore, A., Shah, T.M., Telluri, M., Amindala, B.P., Ruperao, P., Katta, M.A.V.S.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) An Integrated SNP Mining and Utilization (ISMU) pipeline for next generation sequencing data. PLoS ONE, 9 (7). Art. e101754.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mir, R.R., Bhatia, S., Thudi, M., Hu, Y., Azam, S., Zhang, Y., Jaganathan, D., You, F.M., Gao, J., Riera-Lizarazu, O. and Luo, M-C (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73.

Ali, L., Madrid, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Azam, S., Millan, T., Rubio, J. and Gil, J. (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Janila, P., Nigam, S.N., Sudini, H., Gowda, M.V.C., Sriswathi, M., Radhakrishnan, T., Manohar, S.S. and Nagesh, P. (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mohan, S.M., Gaur, P.M., Chamarthi, S.K., Singh, V.K., Srinivasan, S., Swapna, N., Sharma, M., Pande, S., Singh, S. and Kaur, L. (2014) Marker‐Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7 (1).

Garg, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jain, M. (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5 . Art. 00398.

Upadhyaya, H.D., Dwivedi, S.L., Vadez, V., Hamidou, F., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2014) Multiple resistant and nutritionally dense germplasm identified from mini core collection in peanut. Crop Science, 54 (2). pp. 679-693.

Kim, D.H., Kaashyap, M., Rathore, A., Das, R.R., Parupalli, S., Upadhyaya, H.D., Gopalakrishnan, S., Gaur, P.M., Singh, S., Kaur, J., Yasin, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 513-517.

Vetriventhan, M., Upadhyaya, H.D., Anandakumar, C.R., Senthilvel, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Parzies, H.K. (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435.

Varshney, R.ORCID: 0000-0002-4562-9131, Thudi, M., Upadhyaya, H., Dwivedi, S., Udupa, S., Furman, B., Baum, M. and Hoisington, D. (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120.

Saxena, R.K., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Structural variations in plant genomes. Briefings in Functional Genomics, 13 (4). pp. 296-307.

Ruperao, P., Chan, C-K.K., Azam, S., Karafiátová, M., Hayashi, S., Čížková, J., Saxena, R.K., Šimková, H., Song, C., Vrána, J., Chitikineni, A., Visendi, P., Gaur, P.M., Millan, T., Singh, K.B., Taran, B., Wang, J., Batley, J., Doležel, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2014) A chromosomal genomics approach to assess and validate thedesiandkabulidraft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mohan, S.M., Gaur, P.M., Gangarao, N.V.P.R., Pandey, M.K., Bohra, A., Sawargaonkar, S.L., Chitikineni, A., Kimurto, P.K., Janila, P., Saxena, K.B., Fikre, A., Sharma, M., Rathore, A., Pratap, A., Tripathi, S., Datta, S., Chaturvedi, S.K., Mallikarjuna, N., Anuradha, G., Babbar, A., Choudhary, A.K., Mhase, M.B., Bharadwaj, Ch., Mannur, D.M., Harer, P.N., Guo, B., Liang, X., Nadarajan, N. and Gowda, C.L.L. (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134.

Tuteja, R., Saxena, R.K., Davila, J., Shah, T., Chen, W., Xiao, Y-L, Fan, G., Saxena, K.B., Alverson, A.J., Spillane, C., Town, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four cajanus genotypes. DNA Research, 20 (5). pp. 485-495.

Yeri, S.B., Shirasawa, K., Pandey, M.K., Gowda, M.V.C., Sujay, V., Shriswathi, M., Nadaf, H.L., Motagi, B.N., Lingaraju, S., Bhat, A.R.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Krishnaraj, P.U., Bhat, R.S. and Link, W. (2013) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaeaL.). Plant Breeding, 133 (1). pp. 80-85.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Chamarthi, S.K., Krishnamurthy, L., Tripathi, S., Kashiwagi, J., Samineni, S., Singh, V.K., Thudi, M. and Jaganathan, D. (2013) Fast‐Track introgression of “ QTL‐hotspot” for root traits and other drought tolerance traits in JG 11, an elite and leading variety of chickpea. The Plant Genome, 6 (3).

Kudapa, H., Ramalingam, A., Nayakoti, S., Chen, X., Zhuang, W-J, Liang, X., Kahl, G., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 40 (12). p. 1221.

Wang, H., Pandey, M.K., Qiao, L., Qin, H., Culbreath, A.K., He, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Scully, B.T. and Guo, B. (2013) Genetic mapping and quantitative trait loci analysis for disease resistance using F 2 and F 5 Generation‐based genetic maps derived from ‘Tifrunner’ × ‘GT‐C20’ in peanut. The Plant Genome, 6 (3). pp. 1-10.

Saxena, K.B., Kumar, R.V., Tikle, A.N., Saxena, M.K., Gautam, V.S., Rao, S.K., Khare, D.K., Chauhan, Y.S., Saxena, R.K., Reddy, B.V.S., Sharma, D., Reddy, L.J., Green, J.M., Faris, D.G., Nene, Y.L., Mula, M., Sultana, R., Srivastava, R.K., Gowda, C.L.L., Sawargaonkar, S.L., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gupta, P. (2013) ICPH 2671 – the world's first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kudapa, H. (2013) Legume biology: The basis for crop improvement. Functional Plant Biology, 40 (12). v-viii.

Rajaram, V., Nepolean, T., Senthilvel, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vadez, V., Srivastava, R.K., Shah, T.M., Supriya, A., Kumar, S., Ramana Kumari, B., Bhanuprakash, A., Lakshmi Narasu, M., Riera-Lizarazu, O. and Hash, C.T. (2013) Pearl millet [Pennisetum glaucum(L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (1). Art. 159.

Khera, P., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Pest and diseases: Old and new threats – Modern breeding tools to tailor new crop cultivars. Sécheresse, 24 (4). pp. 261-273.

Mir, R.R., Saxena, R.K., Saxena, K., Upadhyaya, H.D., Kilian, A., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanusspp.). Plant Breeding, 132 (5). pp. 472-478.

Non-refereed Article

Singh, A., Kumar, M., Raina, S., Ratnaparkhe, M., Rane, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kachroo, A. (2020) Modulation of GmFAD3 expression alters responses to abiotic stress in soybean. Authorea .

Zeng, Q., Cao, W., Xing, L., Qin, G., Wu, J., Nagle, M.F., Xiong, Q., Chen, J., Yang, L., Bajaj, P., Chitikineni, A., Zhou, Y., Yu, Y., Xu, J., Nie, X., Huang, L., Liu, S., Šafář, J., Šimková, H., Song, W., Guo, B., Chen, S., Doležel, J., Hao, Z., Cheng, Q., Liang, J., Tang, J., Cao, A., Wang, Q., Lu, X., Yang, S., Ma, H., Liu, J., Wang, X., Zhang, H., Wang, Z., Ji, W., Wang, C., Yuan, F., Shi, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kang, Z., Han, D. and Xu, H. (2020) A novel high-accuracy genome assembly method utilizing a high-throughput workflow. bioRxiv .

Cobos, C.J., Tengey, T.K., Balasubramanian, V.K., Williams, L.D., Sudini, H.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Falalou, H., Burow, M.D. and Mendu, V. (2018) Employing Peanut Seed Coat Cell Wall Mediated Resistance Against Aspergillus flavus Infection and Aflatoxin Contamination. Preprints .

Koul, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Young researchers need to focus more on agriculture. BioSpectrum, 13 (11-12). pp. 78-79.

Conference Paper

Roorkiwal, M., Chellapilla, B., Santantonio, N., Jarquin, D., Samineni, S., Jones, E., Robbins, K., Singh, N.P., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomic prediction to accelerate the rate of genetic gain in Chickpea for providing nutritional food security. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA

Sharma, S., Kumar, C.V.S., Prasanthi, L., Rao, P.J., Thi, P., Win, M.M., Muniswamy, S., Panwar, R.K., Arora, A., Singh, S., Rani, U., Thudi, M., Sharma, M., Nimje, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Pre-breeding for genetic enhancement of grain legumes. In: ICPulse 2020: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, 10 - 12 February 2020, Central Institute of Agricultural Engineering, Bhopal

Smith, M., Kholova, J., Roorkiwal, M., Barmukh, R., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W004: Dissection of physiological and molecular mechanisms of drought tolerance in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Roorkiwal, M., Santantonio, N., Jarquin, D., Chellapilla, B., Singh, M., Gaur, P.M., Samineni, S., Howard, R., Gao, S.K., Jones, E., Crossa, J., Robbins, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W264: Achieving higher genetic gain by enhancing precision through genomic selection breeding in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Zhuang, W., Chen, H., Meng, Y., Wang, J., Pandey, M.K., Zhang, C., Yang, Q., Cai, T., Deng, Y., Paterson, A.H., Wang, X., Ming, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W527: The genome of Arachis hypogaea provide insight into the evolution and domestication. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Khan, A.W., Garg, V., Roorkiwal, M., Bayer, P.E., Thudi, M., Chitikineni, A., Upadhyaya, H.D., Nguyen, H.T., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W529: Walking on the wild side using pangenomics for accelerated crop improvement in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Chitikineni, A., Wang, H., Agarwal, G., Khan, A.W., Pandey, M.K., Ozias-Akins, P., Holbrook, C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) W565: Application of TILLING and BSA-Seq approach to map prominent main stem and leaf spot resistance in groundnut. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Jones, E., Robbins, K., Gao, S.Y., Nti-Addae, Y.A., Dreher, K.A., Olsen, M., Dreisigacker, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rathore, A., Cobb, J.N., Maulen, R. and McCouch, S. (2019) W613: The genomic open-source breeding informatics initiative: Developing a global community of knowledge surrounding the use of markers in genomic selection. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Ng, E.H., Bohar, R., Kigoni, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Olsen, M., Stolt, P. and Vanroggen, P. (2019) W617: Accelerating genetic gains in crop breeding in Sub-Saharan Africa and Southern Asia by improving access and affordability to high throughput genotyping. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Pandey, M.K., Sudini, H.K., Pandey, A.K., Shasidhar, Y., Fountain, J., Manohar, S.S., Nayak, S.N., Soni, P., Kumar, R., Variath, M.T., Pandey, S., Janila, P., Bera, S.K., Liao, B., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W638: Understanding and modifying the nutritional and oil quality architecture to breed Nutrition-Rich and high oil quality peanuts. In: Plant and Animal Genome XXVII Conference, 12 - 16 January 2019, San Diego, CA

Barmukh, R., Roorkiwal, M., Thudi, M., Kholova, J., Gaur, P.M., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W903: Unravelling the physiological basis of drought tolerance regulated By "QTL-Hotspot" region in chickpea (Cicer arietinum L.). In: Plant & Animal Genome Conference XXVIII, 12 - 16 January 2019, San Diego, CA

Robbins, K.R., Olsen, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Zhang, X., Beyene, Y., Bharadwaj, C., Gaur, P.M., Gowda, M., Makumbi, D., Vicente, F.S., Atanda, S.A., Dreher, K., Crossa, J., Gao, S., Rathore, A., Ulat, V., Quinn, M.G. and Jones, E. (2018) Implementation of genomic selection in maize and chickpea breeding programs in Africa and South Asia. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD

Ojiewo, C.O., Rubyogo, J.C., Akpo, E., Omoigui, L., Muricho, G. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Scaling-up legume seed production and delivery for enhanced productivity and livelihoods of smallholder farmers. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD

Varshney, R.K.ORCID: 0000-0002-4562-9131, Sajja, S., Thudi, M., Jayalakshmi, V., Vijayakumar, A. and Mannur, D.M. (2016) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: 3rd International Plant Breeding Conference (IPBC) 2016, 15 - 16 November 2016, Hotel Bangi-Putrajaya, Malaysia

Mannur, D.M., Yeri, S.B., Mahiboobsa, M., Shankergouda, I., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M. and Jayalakshmi, S.K. (2016) Introgress of foc 4 QTL locus to develop "Super Annigeri-1" chickpea variety resistant to fusarium wilt through MABC. In: VII International Scientific Agriculture Symposium (Agrosym 2016), 6 - 9 October 2016, Jahorina, Bosnia and Herzegovina

Sameer Kumar, C.V., Nagesh Kumar, M.V., Sudhakar, C., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Crop specific traits of Pigeonpea [Cajanus cajan (L.) Millspaugh) and their implications in seed production. In: 8th National Seed Congress, 27 - 29 October 2015, Hyderabad, India

Sajja, S., Samineni, S., Gadekar, M., Jayalakshmi, V., Vijay-akumar, A., Yasin, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia: Oil And Protein Crops Section Conference, 1 - 5 November 2015, WOW Kremlin Palace Hotel, Antalya, Turkey

Samineni, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sajja, S., Thudi, M., Jayalakshmi, V., Vijayakumar, A. and Mannur, D.M. (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia: Oil And Protein Crops Section Conference, 1 - 5 November 2015, WOW Kremlin Palace Hotel, Antalya, Turkey

Sameer Kumar, C.V., Singh, I.P., Patil, S.B., Mula, M.G., Kumar, R.V., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Recent advances in Pigeonpea [Cajanus cajan (L.) Millspaugh) Research. In: 2nd International Conference on Bio-Resource and Stress Management, 7 - 10 January 2015, Hyderabad, India

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) The 1000 Pulse Genome Sequencing Initiative: Connecting Genes to Traits. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Pattanashetti, S.K., Vetriventhan, M., Lalitha, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, S. (2014) Capturing variations for multiple stress and agronomic traits for improvement of grain legumes. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Singh, S., Lalitha, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Chickpea germplasm for use in crop improvement: Approaches and way forward. In: Harnessing Chickpea Value Chain for Nutrition Security and Commercialization of Smallholder Agriculture in Africa, 30 Jan - 1 Feb 2014, Debra Zeit, Ethiopia

Gaur, P.M., Samineni, S., Krishnamurthy, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kumar, S., Ghanem, M.E., Beebe, S.E., Rao, I.M., Chaturvedi, S.K., Basu, P.S., Nayyar, H., Jayalakshmi, V. and Babbar, A. (2014) High temperature tolerance in grain legumes. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Pasupuleti, J., Pandey, M.K., Manohar, S.S., Sudini, H., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Identification of introgression lines with superior pod yield and improved rust resistance in peanut (Arachis hypogaea L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Sameer Kumar, C.V., Mula, M.G., Singh, P., Mula, R.P., Saxena, R.K., Ganga Rao, N.V.P.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea perspective in India. In: 1st Philippine Pigeonpea Congress, 16 - 18 December 2014, Mariano Marcos State University, Batac, Ilocos Norte, Philippines

Monyo, E.S., Ganga Rao, N.V.P.R., Ojiewo, C., Simtowe, F., Rubyogo, J.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2014) The Seed Constraint: New approaches for smallholder agriculture in eastern and southern Africa. In: Harnessing Chickpea Value Chain for Nutrition Security and Commercialization of Smallholder Agriculture in Africa, 30 Jan - 1 Feb 2014, Debra Zeit, Ethiopia

Saxena, R.K., Patel, K., Obarley, Y., Kumar, V., Kim, C., Singh, V., Shaun, A., Kuruvinashetti, M.S., Rhee, H., Kim, B., Zhang, W., Sameer Kumar, C.V., Karwa, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Whole genome re-sequencing based classification of heterotic pools for accelerating hybrid breeding in pigeonpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Conference Item

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomics-Assisted Breeding. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Translational genomics for developing climate resilient and high yielding chickpeas. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA.

Gaur, P.M., Samineni, S., Hingane, A., Sharma, M., Jaba, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Saxena, R.K., Sharma, S.S., Bhatnagar, P.M. and Sharma, K.K. (2019) Breeding for resistance to diseases and insect pests in grain legumes. In: XIX International Plant Protection Congress, 10 - 14 November 2019, Hyderabad, Telangana, India.

Agarwal, C., Vandemark, G.J., Chen, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genome wide association studies and QTL mapping in chickpeas for resistance to Ascochyta Blight and Pythium Ultimum. In: 2019 ASA-CSSA-SSSA International Annual Meeting: Embracing the Digital Environment, 10 - 13 Vov. 2019, San Antonio, TX.

Sharma, S., Sharma, R., Singh, I., Jayalekha, A.K., Yadav, Y., Vadez, V., Gupta, S.K., Kholova, J., Singh Deora, V., Yadav, D., Gangashetty, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Improving biotic and abiotic stress tolerance of cultivated Pearl Millet (Pennisetum glaucum L.) through Introgression of alleles from wild species. In: 2019 ASA-CSSA-SSSA International Annual Meeting: Embracing the Digital Environment, 10 - 13 Vov. 2019, San Antonio, TX.

Bohar, R., Ng, H.W., Kigoni, M., Vanroggen, P., Stolt, P., Olsen, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Shared genotyping platform to achieve accelerated genetic gains in crop improvement in Sub-Saharan Africa and South Asia by enabling access to high throughput genotyping. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liu, X. (2019) Translational genomics. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Translational genomics for improving dryland crops. In: 13th International Conference on Development of Drylands: Converting Dryland Areas from Grey into Green, 11 - 14 February 2019, Jodhpur, India.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) A high resolution gene expression atlas in Chickpea: Implications in crop improvement. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) 4Gs in crop breeding for pulses improvement in developing countries. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Varshney, R.ORCID: 0000-0002-4562-9131 and Gupta, R. (2018) Advanced genomics and breeding technologies to accelerate genetic gains. In: Mini Symposium. Centre of Excellence in Genomics & Systems Biology (CEGSB), 20 Dec. 2018, ICRISAT, Hyderabad, India.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) CSSA: Translational Genomics. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Sharma, R., Singh, S., Nayak, S., Botapati, P., Khan, A. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. In: International Congress of Plant Pathology (ICPP), July 29 - August 03, 2018, Boston, MA.

Puppala, N., Mura, J.D., Pasupuleti, J., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genetic mapping of yield traits using ril population derived from Valencia-C X Jug-03 of peanut (Arachis hypogaea L.). In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Nguyen, H.T., Jones, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genome data management, genome mapping, and Genomics-Assisted breeding oral. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Janila, P., Radhakrishnan, T., Murali, T.V., Bera, S.K., Dobariya, K.L., Nigam, S.N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Manohar, S.S., Manivannan, N. and Vasanthi, R.P. (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, 10 - 12 October 2018, Stellenbosch, South Africa.

Lee, S-H and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Legumes Genomics. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Appels, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Plenary Lecture: Philippa Borrill - "The Transcriptome of Polyploid Wheat". In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Fountain, J., Koh, J., Pandey, M., Zhuang, W., Chen, Z-Y, Kemerait, R., Chen, S., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. In: 11th International Congress of Plant Pathology (ICPP) 2018: Plant Health in A Global Economy, 29 July - 3 August 2018, Boston, MA.

Guo, B., Agarwal, G., Clevenger, J., Pandey, M., Wang, H., Sisidar, Y., Gangurde, S., Fountain, J., Choudhary, D., Culbreath, A., Liu, X., Bertioli, D., Jackson, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) The SNP-based high-density linkage maps and fine mapping of QTLs controlling disease resistance using whole-genome re-sequencing in peanut. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Jones, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Symposium - Genome Data Management and Integration for Improved Breeding. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Translational Genomics for Agriculture. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Saxena, R.K., Pazhamala, L.T., Sinha, P., Sameer Kumar, C.V., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W003: Changes in the pigeonpea genome under abiotic stress responses. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W006: Genomic and genetic analysis in polyploid species a journey of genes from genome to fields in groundnut. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W241: The RNA-Seq Based Gene Expression Atlas of a Major Food Legume Chickpea (Cicer arietinum L.). In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) A journey of genes from genome to fields in groundnut. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Jones, E., Gao, S., Nti-Addae, Y.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Dreher, K., Kretzschmar, T., Olsen, M., McCouch, S.R. and Robbins, K.R. (2017) 127-7: The Genomic Open-Source Breeding Informatics Initiative (GOBII) - a Gates Foundation Initiative to Transform Breeding through the Use of Genomic Selection. In: 2017 Annual Meeting: Managing Global Resources for a Secure Future, 22 - 25 October 2017, Tampa, FL.

Chichaybelu, M., Eshete, M., Korbu, L., Mohammed, R., Girma, N., Bekele, D., Geleta, T., Fikre, A., Ganga Rao, N.V.P.R., Ojiewo, C.O., Monyo, E., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Desmae, H., Ntare, B., Motagi, B.N., Falalou, H., Upadhyaya, H.D., Oteng-Frimpong, R., Sako, D., Echekwu, C., Miningou, A., Monyo, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Fountain, J., Agarwal, G., Bajaj, P., Pandey, M., Kemerait, R. and Varshney, R.ORCID: 0000-0002-4562-9131 (2017) Aspergillus flavus functional genomics: Toward enhancing host resistance to aflatoxin contamination under drought using biotechnology. In: Annual Meeting. American Phytopathological Society (APS), 5 - 9 August 2017, San Antonio, TX.

Bharadwaj, C., Patil, B.S., Madan, P., Manu, B., Tapan, K., Neeraj, K., Philanim, S., Soren, K.R., Jain, P.K., Supriya, S., Nazish, N., Shruti, R., Sarvjeet, S., Tripathi, S., Hedge, V.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Chauhan, S.K. (2017) Breeding chickpea for water limited environments: Selection indices and strategies. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Chen, H., Zhang, C., Cai, T.C., Deng, Y., Zhou, S.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W.J. (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Gaur, P.M., Samineni, S., Thudi, M., Sajja, S., Chaturvedi, S.K., Jayalakshmi, V., Babbar, A., Yasin, M., Mannur, D.M., Vijaykumar, A.G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Dixit, G.P. (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Ruperao, P., Bayer, P., Chan, C.K.K., Hayashi, S., Roorkiwal, M., Chitikineni, A., Sutton, T., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Somanaboina, A.K., Narasu, L.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kishor, P.B.K. (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Fountain, J.C., Bajaj, P., Yang, L., Pandey, M.K., Kumar, V., Jayale, A.S., Chitikineni, A., Lee, R.D., Scully, B.T., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Chaturvedi, S.K., Singh, N.P., Gaur, P.M., Mishra, N., Alok, D., Sumit, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Thudi, M., Gaur, P.M., Krishnamurthy, L., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kale, S.M., Jaganathan, D., Roorkiwal, M., Thudi, M., Purushothaman, R., Praveenkumar, M., Krishnamurthy, L., Kavi Kishor, P.B., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Palavalasa, H.K., Narasu, L.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kavi Kishor, P.B. (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Roorkiwal, M., Jarquin, D., Jain, A., Garg, V., Kale, S.M., Singh, M.K., Samineni, S., Gaur, P.M., Rathore, A., Chellapilla, B., Tripathi, S., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sinha, P., Saxena, R.K., Singh, V.K., Khan, A.W., Upadhyaya, H.D., Desai, A., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Haplotype for drought responsive genes in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Mishra, N., Monyo, E.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Harnessing the power of social media to reach the unreached: knowledge dissemination for greater impact of tropical legumes. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholova, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sameer Kumar, C.V., Hingane, A.J., Shruthi, H.B., Sharma, M., Sudhakar, C., Nagesh Kumar, M.V., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M. and Wani, S.P. (2017) Hybrid pigeonpea: Best bet for maximizing productivity in dry lands. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Singh, S.K., Kale, S.M., Saxena, R.K., Sinha, P., Parupalli, S., Suryanaraya, V., Obala, J., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification and validation of insertion–deletion polymorphisms in pigeonpeaa. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Yadav, P., Saxena, R.K., Kandalkar, V.S., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification of genes and genomic segments for cleistogamy in Pigeonpea(Cajanus cajan L.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kaoneka, S.R., Saxena, R.K., Singh, V.K., Sameer Kumar, C.V., Shimelis, H.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Nayak, S.N., Agarwal, G., Pandey, M.K., Sudini, H., Jayale, A.S., Purohit, S., Bajaj, P., Desai, A., Wan, L., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kosgei, A.J., Kimurto, P.K., Gaur, P.M., Yeboah, M.A., Offei, S.K., Danquah, E.Y., Muriuki, R.W., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Monyo, E.S., Desmae, H., Boukar, O., Mukankusi, C., Gaur, P.M., Okori, P., Motagi, B.N., Ajeigbe, H.A., Fatokun, C., Moukumbi, Y., Kamara, A., Omoigui, L., Arega, A., Mausch, K., Bodo, R., Beebe, S., Ojiewo, C., Rubyogo, J., Akpo, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Liao, B., Lei, Y., Jiang, H., Yan, L., Wan, L., Huang, L., Zhou, X., Luo, H., Chen, Y., Wang, H., Pandey, M.K., Sudini, H., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Management of aflatoxin contamination in groundnut by enhancing host-plant resistance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kudapa, H., Agarwal, G., Chitikineni, A., Gaur, P.M., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Mining for heat stress responsive genes by RNA-Seq based comprehensive gene expression analyses in chickpea (Cicer arietinum L.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kumar, A.L.R., Thirumalaisamy, P.P., Narendrakumar, ., Lalwani, H.B., Nadaf, H.L., Nagaraju, P., Yenagi, B., Patil, S., Suryawanshi, J., Deshmukh, M.P., Kumbhar, C.T., Kathmale, D.K., Naik, K.S.S., Rajesh, P., Vemana, K., Premalatha, N., Sundaravadana, S., Variath, M.T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Janila, P. (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Obala, J., Saxena, R.K., Singh, V.K., Kale, S.M., Garg, V., Kumar, V., Sameer Kumar, C.V., Tongoona, P., Sibiya, J., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Puppala, N., Xavier, A., Garg, V., Nayak, S.N., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Layland, N., Payton, P. and Holbrook, C. (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Pazhamala, L.T., Saxena, R.K., Purohit, S., Bajaj, P., Kumar, V., Garg, V., Srikanth, S., Hingane, A.J., Kulshreshtha, A., Krishnamurthy, L., Sameer Kumar, C.V., Verdier, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kimurto, P., Oyier, M., Mulwa, R., Singok, S., Towett, B., Cheruiyot, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Mahender, T., Ganga Rao, N.P.V.R., Silim, S. and Siambi, M. (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Shruthi, H.B., Hingane, A.J., ReddiSekhar, M., Srivarsha, J., Bhosle, T.M., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Wani, S.P. and Sameer Kumar, C.V. (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Saxena, R.K., Singh, V., Rathore, A., Yu, O., Kim, C., Kumar, V., Patel, K., Khan, A.W., Tyagi, K., An, S., Seon, D., Kuruvinashetti, M.S., Kim, J., BellBull, K., Zhang, W., Sameer Kumar, C.V., Muniswamy, S., Saxena, K.B., Reif, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Puppala, N., Mura, J.D., Pasupuleti, J., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2017) Variation in transpiration efficiency and its related traits in Valencia mapping population ICGV 7243 X Valencia-C. In: 2017 Annual Meeting: Managing Global Resources for a Secure Future, 22 - 25 October 2017, Tampa, FL.

Pandey, M.K., Agarwal, G., Kale, S.M., Clevenger, J., Nayak, S.N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H.D., Vishwakarma, M.K., Leal-Bertioli, S., Liang, X., Bertioli, D.J., Guo, B., Jackson, S.A., Ozias-Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Dillon, N., Innes, D., Ming, Y., Fang, X., Li, X., Gao, X., Zhan, R.L., Hong Xia, W., Bajaj, P., Bally, I., Kumar, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Drafting the Kensington Pride Mango Genome. In: Plant & Animal Genome Conference XXIV, 9 - 13 January 2016, San Diego, CA.

Motagi, B.N., Desmae, H., Ajeigbe, H.A., Echekwu, C.A., Dramane, S., Tabo, R., Monyo, E., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Germplasm enhancement for increasing groundnut productivity and production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC) 2016, 6 - 9 November 2016, New Delhi, India.

Dillon, N., Innes, D., Broadley, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bally, I.S. (2016) The Queensland Mango Genomics Initiative. In: Plant & Animal Genome Conference XXIV, 9 - 13 January 2016, San Diego, CA.

Chaturvedi, S., Singh, N.P., Mishra, N., Gaur, P. and Varshney, R.ORCID: 0000-0002-4562-9131 (2016) Tailoring chickpea varieties for amenability to machine harvesting. In: #Legumes4Africa: PanAfrican Grain Legume and World Cowpea Conference, 28 Feb - 04 Mar 2016, Livingstone, Zambia.

Motagi, B.N., Ajeigbe, H.A., Echekwu, C., Mohammed, S.G., Adnan, A.A., Omoigui, L.O., Desmae, H.M., Monyo, E., Okori, P., Janila, P., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tabo, R. (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: 8th International Conference of the Peanut Research Community: Advances in Arachis through Genomics & Biotechnology (AAGB-2015), 4 - 7 November 2015, Brisbane, Australia.

Dillon, N., Kuhn, D., Innes, D., Bally, I. and Varshney, R.ORCID: 0000-0002-4562-9131 (2015) Mango genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, 16 - 18 November 2015, Brisbane Convention and Exhibition Centre, Australia.

Bhat, R.S., Kolekar, R.M., Asha, B., Sukruth, M., Shirasawa, K., Sujay, V., Khedikar, Y., Sarvamangala, C., Gowda, M.V.C., Motagi, B.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: 8th International Conference of the Peanut Research Community: Advances in Arachis through Genomics & Biotechnology (AAGB-2015), 4 - 7 November 2015, Brisbane, Australia.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Translational genomics for chickpea improvement. In: 3rd International Conference. Plant Genetics, Genomics, Bioinformatics and Biotechnology, 17 - 21 June 2015, Novosibirsk, Russia.

Monyo, E.S., Ndjeunga, J., Upadhyaya, H., Boukar, O., Mukankusi, C., Gaur, P., Sameer Kumar, C.V., Agrama, H., Rubyogo, J., Ganga Rao, N.V.P.R., Varshney, R.ORCID: 0000-0002-4562-9131, Gowda, C.L.L., Kumara Charyulu, D., Arega, A., Katungi, E., Siambi, M., Okori, P., Desmae, H., Beebe, S., Myer, M., Kamara, A., Boahen, S. and Ajeigbe, H. (2014) Achievements, Challenges and Lessons in Enhancing Productivity and Production of Major Tropical Legumes for sub-Saharan Africa and South Asia. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Thudi, M., Gaur, P.M., Samineni, S., Ganeshram, S., Niranjan, B., Ramaswamy, G. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) CaTILL: A resource for novel alleles for chickpea (Cicer arietinum) improvement. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Gang Rao, N.V.P.R., Ojiewo, C., Silim, S.N., Gaur, P.M., Gowda, C.L.L., Moses, S., Monyo, E.S., Fikre, A., Kileo, R., Kimurto, P., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Chickpea breeding and development efforts in Eastern and Southern Africa: Achievements and opportunities. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Singh, V.K., Khan, A.W., Takagi, H., Saxena, R.K., Kumar, V., Sharma, M., Sameer Kumar, C.V., Sinha, P., Chitikineni, A., Patil, S., Ghanta, A., Yamini, K.N., Parupalli, S., Muniswamy, S., Dharmaraj, P.S., Terauchi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Fast forward genetic mapping provide candidate genes for resistance to fusarium wilt and sterility mosaic disease resistance in pigeonpea (Cajanus cajan L. Millsp.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Jaganathan, D., Kale, S., Thudi, M., Ruperao, P., Kavi Kishore, P.B., Gaur, P.M., Mohan Katta, A.V.S.K., Nguyen, H.T., Batley, J., Edwards, D., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Fine mapping of a “QTL-hotspot” for drought tolerance in chickpea (Cicer arietinum L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Upadhyaya, H.D., Sharma, S., Dwivedi, S.L., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vetriventhan, M., Pattanashetti, S.K. and Lalitha, N. (2014) Genetic resources conservation and strategies for enhanced utilization in crop improvement. In: 4th International Workshop: Next-generation genomics and integrated breeding for crop improvement, 19th - 21 February 2014, Patancheruvu, India.

Kang, Y.J., Kim, S.K., Kim, M.Y., Lestari, P., Kim, K.H., Ha, B.K., Jun, T.H., Hwang, W.J., Lee, T., Lee, J., Shim, S., Yoon, M.Y., Jang, Y.E., Han, K.S., Taeprayoon, P., Yoon, N., Somta, P., Tanya, P., Kim, K.S., Gwag, J-G, Moon, J.K., Lee, Y.H., Jackson, S.A., Schafleitner, R., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S.H. (2014) Genome sequence of mungbean and insights into evolution within Vigna species. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kudapa, H., Agarwal, G., Doddamani, D., Kumar, V., Khan, A.W., Chitikineni, A., Katta, K., Gaur, P.M. and Krishnamurthy, L. (2014) Identification and validation of heat stress responsive genes in chickpea (Cicer arietinum L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Sinha, P., Saxena, R.K., Singh, V.K., Suryanarayana, V., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Identification of internal housekeeping genes for studying gene expression in pigeonpea by quantitative real-time PCR. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Ellis, N., Nagaraji, S., Beebe, S., Ghanem, M., Okori, P., Chaturvedi, S.K., Tamo, M., Agrawal, S.K., Gaur, P., Gopalakrishnan, S., Kumar, C.V.S., Varshney, R.ORCID: 0000-0002-4562-9131 and Njuguna, E.M. (2014) Nutrient-efficient, resilient and sustainable legumes for prosperity in the drylands. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Ganga Rao, N.V.P.R., Silim, S.N., Siambi, M., Monyo, E.S., Lyimo, S., Ubwe, R., Kananji, G.A.D., Obong, Y., Sameer Kumar, C.V., Gowda, C.L.L., Manuel, A., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea breeding in Eastern and Southern Africa: achievements and future prospects. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Roorkiwal, M., Rathore, A., Das, R.R., Singh, M.K., Srinivasan, S., Gaur, P.M., Bharadwaj, C., Tripathi, S., Hickey, J.M., Lorenz, A., Jannink, J.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Prediction of breeding values using genome wide markers for yield related traits in chickpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Prabhakaran, R., Varshney, R.ORCID: 0000-0002-4562-9131, Gali, K., Sharpe, A. and Buchwaldt, L. (2014) Resistance in chickpea to Ascochyta rabiei is conferred by genes encoding pathogen recognition and other genes in basic defense pathways. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Pandey, M.K., Rathore, A., Das, R.R., Khera, P., Upadhyaya, H.D., Jannink, J-L, Hickey, J.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Selection of appropriate genomic selection model in an unstructured germplasm set of peanut (Arachis hypogaea L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Srinivasan, S., Gaur, P.M., Kamatam, S., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) A major QTL identified for vernalization response in chickpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Sameer Kumar, C.V., Saxena, K.B., Patil, S.B., Vijaykumar, R., Mula, M.G., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) A unique hybrid parental line identification system using obcordate leaf shape marker in Pigeonpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Book Chapter

Satpute, G.K., Ratnaparkhe, M.B., Chandra, S., Kamble, V.G., Kavishwar, R., Singh, A.K., Gupta, S., Devdas, R., Arya, M., Singh, M., Sharma, M.P., Kumawat, G., Shivakumar, M., Nataraj, V., Kuchlan, M.K., Rajesh, V., Srivastava, M.K., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2021) Breeding and molecular approaches for evolving drought-tolerant soybeans. In: Giri, B. and Sharma, M.P., (eds.) Plant Stress Biology. Springer, Singapore, pp. 83-130.

Monyo, E.S., Akpo, E., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) A Cross-Case analysis of innovation platform experiences in seven countries in West and East Africa and South Asia. In: Akpo, Essegbemon, Ojiewo, C>O., Kapran, I., Omoigui, L.O. and Diama, A., (eds.) Enhancing Smallholder Farmers' Access to Seed of Improved Legume Varieties Through Multi-stakeholder Platforms. Springer, pp. 185-197.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Better-off women boosting groundnut business in Ghana. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 91-104.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Breakthroughs in groundnut production communities in Nigeria. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 77-83.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Common bean value chain actors share their feeling about TL projects in Tanzania. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 33-56.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Apko, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 105-106.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Empowered communities tell their own stories from common bean production in Uganda. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 65-75.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Enthusiasm of actors within the groundnut value chain sharing impact stories in Uganda. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 57-64.

Serba, D.D., Yadav, R.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gupta, S.K., Mahalingam, G., Srivastava, R.K., Gupta, R., Perumal, R. and Tesso, T.T. (2020) Genomic designing of Pearl Millet: A resilient crop for arid and Semi-arid environments. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Cereal Crops. Springer, pp. 221-286.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Impact stories and testimonies from diverse actors in groundnut value chain in Tanzania. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 3-32.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Women at the center of Cowpea value chain development in Nigeria. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 85-90.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) A brief overview of smallholder farmers’ access to seed of improved legume varieties. In: Apko, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 1-2.

Gangurde, S.S., Kumar, R., Pandey, A.K., Burow, M., Laza, H.E., Nayak, S.N., Guo, B., Liao, B., Bhat, R.S., Madhuri, N., Hemalatha, S., Sudini, H.K., Janila, P., Latha, P., Khan, H., Motagi, B.N., Radhakrishnan, T., Puppala, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2019) Climate-Smart groundnuts for achieving high productivity and improved quality: Current status, challenges, and opportunities. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Oilseed Crops. Springer, Cham, pp. 133-172.

Bohra, A., Pareek, S., Jones, M., Jha, U.C., Satheesh Naik, S.J., Kaashyap, M., Patil, P.G., Maurya, A.K., Saxena, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genomic interventions to improve resilience of pigeonpea in changing climate. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Pulse Crops. Springer, Cham, pp. 107-134.

Saxena, R.K., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Pigeonpea (Cajanus cajan L. Millsp.): An ideal crop for sustainable agriculture. In: Al-Khayri, J.M., Jain, S.M. and Johnson, D.V., (eds.) Advances in Plant Breeding Strategies: Legumes. Springer, pp. 409-429.

Roorkiwal, M., Jain, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Advances in chickpea genomic resources for accelerating the crop improvement. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 53-67.

Bharadwaj, C., Sachdeva, S., Singh, R.K., Patil, B.S., Roorkiwal, M., Chaturvedi, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Chickpea Genomics. In: Gosal, S. and Wani, S., (eds.) Biotechnologies of Crop Improvement. Springer, Cham, pp. 289-316.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M. and Muehlbauer, F.J. (2018) Future Prospects for Chickpea Research. In: Varshney, R.K., Thudi, M. and Muehlbauer, F.J., (eds.) The Chickpea Genome. Springer, Cham, pp. 135-142.

Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Groundnut entered Post-genome sequencing era: Opportunities and challenges in translating genomic information from genome to field. In: Gosal, S. and Wani, S., (eds.) Biotechnologies of Crop Improvement. Springer, Cham, pp. 199-209.

Samineni, S., Thudi, M., Sajja, S.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Impact of Genomics on Chickpea Breeding. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 125-134.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Chitikineni, A. (2018) Plant Genetics and Molecular Biology: An Introduction. In: Varshney, R.K., Pandey, M.K. and Chitikineni, A., (eds.) Plant Genetics and Molecular Biology. Springer, Cham, pp. 1-9.

Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Requirement of Whole-Genome sequencing and background history of the national and international genome initiatives. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 107-115.

Khan, A.W., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2018) Sequencing the Chickpea Genome. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 117-123.

Vishwakarma, M.K., Nayak, S.N., Guo, B., Wan, L., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2017) Classical and molecular approaches for mapping of genes and Quantitative Trait Loci in peanut. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 93-116.

Jain, A., Roorkiwal, M., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Current status and prospects of genomic selection in legumes. In: Varshney, R., Roorkiwal, M. and Sorrells, M., (eds.) Genomic Selection for Crop Improvement. Springer, Cham, pp. 131-147.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (2017) Future prospects. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 99-104.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Puppala, N. (2017) Future prospects for peanut improvement. In: Varshney, R., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 165-169.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M. and Sorrells, M.E. (2017) Genomic selection for crop improvement: An introduction. In: Varshney, R., Roorkiwal, M. and Sorrells, M., (eds.) Genomic Selection for Crop Improvement. Springer, Cham, pp. 1-6.

Wang, H., Guo, X., Pandey, M.K., Ji, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nwosu, V. and Guo, B. (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 117-133.

Saxena, K.B., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Key plant and grain characteristics and their importance in breeding and adaptation of pigeonpea cultivars. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 5-15.

Thudi, M., Saxena, R.K., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Legume genomics: A perspective. In: Dashavantha Reddy, V., Venkateswara rao, K. and Rama Krishna, K., (eds.) Insights on Global Challenges and Opportunities for the Century Ahead. BS Publications, pp. 321-326.

Nayak, S.N., Singh, V.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Marker-Assisted Selection. In: Thomas, B., Murray, B.G. and Murphy, D.J., (eds.) Encyclopedia of Applied Plant Sciences. Academic Press, pp. 183-197.

Bohra, A., Pareek, S., Jha, R., Saxena, R.K., Singh, I.P., Pandey, G., Mishra, R.K., Singh, F., Kaashyap, M., Joshi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Modern genomic tools for pigeonpea improvement: Status and prospects. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 41-54.

Mir, R.R., Rather, I.A., Bhat, M.A., Parray, G.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular Mapping of Genes and QTLs in Pigeonpea. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 55-64.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (2017) The Pigeonpea Genome: An Overview. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 1-4.

Nayak, S.N., Pandey, M.K., Jackson, S.A., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Sequencing ancestor diploid genomes for enhanced genome understanding and peanut improvement. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 135-147.

Singh, V.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Sequencing pigeonpea genome. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 93-97.

Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Whole-Genome sequencing of Pigeonpea: Requirement, background history, current status and future prospects for crop improvement. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 81-91.

Mallikarjuna, N., Saxena, R.K., Byre Gowda, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Wide crossing technology for pigeonpea improvement. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 31-39.

Guo, B., Khera, P., Wang, H., Peng, Z., Sudini, H., Wang, X., Osiru, M., Chen, J., Vadez, V., Yuan, M., Wang, C.T., Zhang, X., Waliyar, F., Wang, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Stalker, H.T. and Wilson, R.F., (eds.) Peanuts. Elsevier Inc., pp. 163-207.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Applications of bioinformatics tools to Genetic Mapping and Diversity in Peanut K Venkatesh, A Roja Rani, P Amareshwari and Ramesh Katam. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 240-256.

Mallikarjuna, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetics, Genomics and Breeding of Peanut: An Introduction. In: Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 25-36.

Mallikarjuna, N., Shilpa, K., Pandey, M., Janila, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Groundnut. In: Singh, M., Bisht, I.S. and Dutta, M., (eds.) Broadening the Genetic Base of Grain Legumes. Springer India, pp. 161-173.

Pandey, M.K., Guo, B., Holbrook, C.C., Janila, P., Zhang, X., Bertioli, D.J., Isobe, S., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Molecular Markers, Genetic Maps and QTLs for Molecular Breeding in Peanut. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 103-137.

Chaturvedi, S.K., Singh, N.P., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mishra, N. (2014) New challenges in breeding chickpea under changing climate. In: Dixit, G.P., Singh, J. and Singh, N.P., (eds.) Pulses: Challenges & Opportunities. Indian Society of Pulses Research and Development, pp. 102-113.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Peanut Breeding Boshou Liao. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 85-102.

Mallikarjuna, N., Srikanth, S., Sameer Kumar, C.V., Srivastava, R.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea. In: Singh, M., Bisht, I.S. and Dutta, M., (eds.) Broadening the Genetic Base of Grain Legumes. Springer India, pp. 149-159.

Gaur, P.M., Thudi, M., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Advances in Chickpea Genomics. In: Gupta, S., Nadarajan, N. and Sen Gupta, D., (eds.) Legumes in the Omic Era. Springer, New York, pp. 73-94.

Bohra, A., Saxena, R.K., Saxena, K.B., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Advances in Pigeonpea Genomics. In: Gupta, S., Nadarajan, N. and Gupta, D.S., (eds.) Legumes in the Omic Era. Springer, New York, pp. 95-110.

Burow, M.D., Leal-Bertioli, S.C.M., Simpson, C.E., Ozias-Akins, P., Chu, Y., Denwar, N.N., Chagoya, J., Starr, J.L., Moretzsohn, M.C., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Holbrook, C.C. and Bertioli, D.J. (2013) Marker-Assisted Selection for Biotic Stress Resistance in Peanut. In: Varshney, R.K. and Tuberosa, R., (eds.) Translational Genomics for Crop Breeding. John Wiley & Sons Inc., pp. 125-150.

Book

Akpo, E., Ojiewo, C.O., Kapran, I., Omoigui, L.O., Diama, A. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2021) Enhancing Smallholder Farmers' Access to Seed of Improved Legume Varieties Through Multi-stakeholder Platforms: Learning from the TLIII project Experiences in sub-Saharan Africa and South Asia. Springer.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Sowing legume seeds, Reaping cash: A renaissance within communities in Sub-Saharan Africa. Springer, Singapore.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Chitikineni, A. (Eds) (2018) Plant Genetics and Molecular Biology. Springer, Cham.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M. and Sorrells, M.E. (Eds) (2017) Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer, Cham.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Puppala, N. (Eds) (2017) The Peanut Genome. Springer International Publishing.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (Eds) (2017) The Pigeonpea Genome. Springer International Publishing.

Monyo, E.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. International Crops Research Institute for the Semi-arid tropics.

Jain, M., Garg, R. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2014) Abiotic stress: Molecular genetics and genomics. Frontiers Media S.A..

Mallikarjuna, N. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2014) Genetics, Genomics and Breeding of Peanuts. CRC Press.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (Eds) (2013) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality. John Wiley & Sons Inc..

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (Eds) (2013) Translational Genomics for Crop Breeding: Biotic Stress. John Wiley & Sons Inc..

Report

Wani, S.P., Bergvinson, D., Raju, K.V., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Mission India for Transforming Agriculture (MITrA). International Crops Research Institute for the Semi-arid tropics

Others

Fountain, J., Bajaj, P., Yang, L., Pandey, M., Nayak, S., Kumar, V., Jayale, A., Chitikineni, A., Lee, R., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Comparative transcriptome analysis of Aspergillus flavus isolates under different oxidative stresses and culture media. Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326152).

Ji, X., Guo, X., Fountain, J., Pandey, M., Nayak, S., Wang, H., Holbrook, C., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Identification of genomic region controlling resistance to aflatoxin contamination in a peanut recombinant inbred line population (Tifrunner XGT-C20). Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326149).

Wang, H., Guo, X., Pandey, M., Ji, X., Holbrook, C., Culbreath, A., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Phenotypic assessments of peanut nested association mapping (NAM) populations. Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326146).

Fountain, J., Baja, P., Yang, L., Pandey, M., Nayak, S., Chitikineni, A., Chen, S., Lee, R., Scully, B., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2013) RNAseq analysis reveals oxidative stress responses of Aspergillus flavus related to stress tolerance and aflatoxin production. Research Project: Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#329427).

This list was generated on Tue Oct 26 14:12:17 2021 UTC.