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Publications: Varshney, Rajeev

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Number of items: 871.

Journal Article

Raza, A., Tabassum, J., Zahid, Z., Charagh, S., Bashir, S., Barmukh, R., Khan, R.S.A., Barbosa, F., Zhang, C., Chen, H., Zhuang, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science, 12 . Art. 794373.

Salehi, H., Chehregani Rad, A., Sharifan, H., Raza, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Aerially applied zinc oxide nanoparticle affects reproductive components and seed quality in fully grown bean plants ( Phaseolus vulgaris L.). Frontiers in Plant Science . Art. 808141.

Sachdeva, S., Bharadwaj, C., Patil, B.S., Pal, M., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Agronomic performance of chickpea affected by drought stress at different growth stages. Agronomy, 12 (5). Art. 995.

Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Analysis of Small RNA Sequencing Data in Plants. Methods in molecular biology, 2443 . pp. 497-509.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X. and Liu, X. (2022) Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 604 . Art. E12.

Srivastava, R.K., Yadav, O.P., Kaliamoorthy, S., Gupta, S.K., Serba, D.D., Choudhary, S., Govindaraj, M., Kholová, J., Murugesan, T., Satyavathi, C.T., Gumma, M.K., Singh, R.B., Bollam, S., Gupta, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Breeding Drought-Tolerant Pearl Millet using conventional and genomic approaches: Achievements and prospects. Frontiers in Plant Science, 13 . Art. 781524.

Samantara, K., Bohra, A., Mohapatra, S.R., Prihatini, R., Asibe, F., Singh, L., Reyes, V.P., Tiwari, A., Maurya, A.K., Croser, J.S., Wani, S.H., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Breeding more crops in less time: A perspective on speed breeding. Biology, 11 (2). Article 275.

Kaashyap, M., Ford, R., Mann, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Siddique, K.H.M. and Mantri, N. (2022) Comparative flower transcriptome network analysis reveals DEGs involved in chickpea reproductive success during salinity. Plants, 11 (3). Art. 434.

Kulwal, P.L., Mir, R.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal . Early View.

Patel, J., Khandwal, D., Choudhary, B., Ardeshana, D., Jha, R.K., Tanna, B., Yadav, S., Mishra, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Siddique, K.H.M. (2022) Differential physio-biochemical and metabolic responses of peanut (Arachis hypogaea L.) under multiple abiotic stress conditions. International Journal of Molecular Sciences, 23 (2). Article 660.

Bomireddy, D., Gangurde, S.S., Variath, M.T., Janila, P., Manohar, S.S., Sharma, V., Parmar, S., Deshmukh, D., ReddiSekhar, M., Reddy, D.M., Sudhakar, P., Reddy, B.V.B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Guo, B. and Pandey, M.K. (2022) Discovery of major quantitative trait loci and candidate genes for fresh seed dormancy in groundnut. Agronomy, 12 (2). Article 404.

Tayade, A.D., Motagi, B.N., Jadhav, M.P., Nadaf, A.S., Koti, R.V., Gangurde, S.S., Sharma, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Bhat, R.S. (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218 (4). Art. 46.

Chen, H., Yang, Q., Fu, H., Chen, K., Zhao, S., Zhang, C., Cai, T., Wang, L., Lu, W., Dang, H., Gao, M., Li, H., Yuan, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2022) Identification of key gene networks and deciphering transcriptional regulators associated with peanut embryo abortion mediated by calcium deficiency. Frontiers in Plant Science, 13 . Art. 814015.

Xiao, Y., Liu, H., Du, P., Liang, X., Li, H., Lu, Q., Li, S., Liu, H., Hong, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Chen, X. (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379 . Art. 131970.

Doležalová, A., Sládeková, L., Šimoníková, D., Holušová, K., Karafiátová, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Doležel, J. and Hřibová, E. (2022) Karyotype differentiation in cultivated chickpea revealed by Oligopainting fluorescence in situ hybridization. Frontiers in Plant Science, 12 . Art. 791303.

Xiao, Y., Liu, H., Lu, Q., Li, H., Liu, Q., Li, S., Liu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liang, X., Hong, Y. and Chen, X. (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155 . Art. 110993.

Kalema, E.P., Akpo, E., Muricho, G., Ringo, J., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Mapping out market drivers of improved variety seed use: The case of sorghum in Tanzania. Heliyon, 8 (1). Art. e08715.

Wani, S.H., Choudhary, M., Barmukh, R., Bagaria, P.K., Samantara, K., Razzaq, A., Jaba, J., Ba, M.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics .

Saeed, F., Chaudhry, U.K., Bakhsh, A., Raza, A., Saeed, Y., Bohra, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Moving beyond DNA sequence to improve plant stress responses. Frontiers in Genetics, 13 . Art. 874648.

Scholz, A.H., Freitag, J., Lyal, C.H.C., Sara, R., Cepeda, M.L., Cancio, I., Sett, S., Hufton, A.L., Abebaw, Y., Bansal, K., Benbouza, H., Boga, H.I., Brisse, S., Bruford, M.W., Clissold, H., Cochrane, G., Coddington, J.A., Deletoille, A-C, García-Cardona, F., Hamer, M., Hurtado-Ortiz, R., Miano, D.W., Nicholson, D., Oliveira, G., Bravo, C.O., Rohden, F., Seberg, O., Segelbacher, G., Shouche, Y., Sierra, A., Karsch-Mizrachi, I., da Silva, J., Hautea, D.M., Da silva, M., Suzuki, M., Tesfaye, K., Tiambo, C.K., Tolley, K.A., Varshney, R.ORCID: 0000-0002-4562-9131, Zambrano, M.M. and Overmann, J. (2022) Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation. Nature Communications, 13 (1). Art. 1086.

Aggarwal, S.K., Singh, A., Choudhary, M., Kumar, A., Rakshit, S., Kumar, P., Bohra, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Pangenomics in microbial and crop research: Progress, applications, and perspectives. Genes, 13 (4). Article 598.

Singh, V., Sinha, P., Obala, J., Khan, A.W., Chitikineni, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity .

Elango, D., Rajendran, K., Van der Laan, L., Sebastiar, S., Raigne, J., Thaiparambil, N.A., El Haddad, N., Raja, B., Wang, W., Ferela, A., Chiteri, K.O., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chopra, S., Singh, A. and Singh, A.K. (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science, 13 . Art. 829118.

Rai, R.K., Kumar, S.S., Sen Gupta, S., Parasannanavar, D.J., Anish, T.S.N., Barik, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Rajkumar, H. (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition . First View.

Montesinos‐Lopez, O.A., Montesinos‐Lopez, A., Acosta, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Bentley, A. and Crossa, J. (2022) Using an incomplete block design to allocate lines to environments improves sparse genome‐based prediction in plant breeding. The Plant Genome . Early View.

Mir, R.R., Choudhary, N., Bawa, V., Jan, S., Singh, B., Bhat, M.A., Paliwal, R., Kumar, A., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Allelic diversity, structural analysis, and Genome-Wide Association Study (GWAS) for yield and related traits using unexplored common bean (Phaseolus vulgaris L.) germplasm from Western Himalayas. Frontiers in Genetics, 11 . Art. 609603.

Montesinos-López, O.A., Montesinos-López, J.C., Montesinos-López, A., Ramírez-Alcaraz, J.M., Poland, J., Singh, R., Dreisigacker, S., Crespo, L., Mondal, S., Govidan, V., Juliana, P., Espino, J.H., Shrestha, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Crossa, J. and Lipka, A. (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3 Genes|Genomes|Genetics, 12 (2).

Raza, A., Tabassum, J., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology . In Press.

Saxena, R.K., Jiang, Y., Khan, A.W., Zhao, Y., Kumar Singh, V., Bohra, A., Sonappa, M., Rathore, A., Kumar, C.V.S., Saxena, K., Reif, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Characterization of heterosis and genomic prediction‐based establishment of heterotic patterns for developing better hybrids in pigeonpea. The Plant Genome, 14 (3). Art. e20125.

Zhang, X., Pandey, M.K., Wang, J., Zhao, K., Ma, X., Li, Z., Zhao, K., Gong, F., Guo, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yin, D. (2021) Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations. Genome Biology, 22 (1). Art. 315.

Garg, V., Dudchenko, O., Wang, J., Khan, A.W., Gupta, S., Kaur, P., Han, K., Saxena, R.K., Kale, S.M., Pham, M., Yu, J., Chitikineni, A., Zhang, Z., Fan, G., Lui, C., Valluri, V., Meng, F., Bhandari, A., Liu, X., Yang, T., Chen, H., Valliyodan, B., Roorkiwal, M., Shi, C., Yang, H.B., Durand, N.C., Pandey, M.K., Li, G., Barmukh, R., Wang, X., Chen, X., Lam, H-M, Jiang, H., Zong, X., Liang, X., Liu, X., Liao, B., Guo, B., Jackson, S., Nguyen, H.T., Zhuang, W., Shubo, W., Wang, X., Aiden, E.L., Bennetzen, J.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research . In Press.

Gangurde, S.S., Nayak, S.N., Joshi, P., Purohit, S., Sudini, H.K., Chitikineni, A., Hong, Y., Guo, B., Chen, X., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Comparative transcriptome analysis identified candidate genes for late leaf spot resistance and cause of defoliation in groundnut. International Journal of Molecular Sciences, 22 (9). Article 4491.

Singh, S., Kudapa, H., Garg, V. and Varshney, R.ORCID: 0000-0002-4562-9131 (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics, 22 . Article number: 289.

Zhao, C., He, L., Xia, H., Zhou, X., Geng, Y., Hou, L., Li, P., Li, G., Zhao, S., Ma, C., Tang, R., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, X. (2021) De novo full length transcriptome analysis of Arachis glabrata provides insights into gene expression dynamics in response to biotic and abiotic stresses. Genomics, 113 (3). pp. 1579-1588.

Srivastava, A.K., Saxena, D.R., Saabale, P.R., Raghuvanshi, K.S., Anandani, V.P., Singh, R.K., Sharma, O.P., Wasinikar, A.R., Sahni, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, N.P. and Dixit, G.P. (2021) Delineation of genotype-by-environment interactions for identification and validation of resistant genotypes in chickpea to fusarium wilt using GGE biplot. Crop Protection, 144 . Art. 105571.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Yu, J., Graner, A., Zhang, Q. and Sorrells, M.E. (2021) Designing future crops: Genomics-Assisted breeding comes of age. Trends in Plant Science, 26 (6). pp. 631-649.

Barmukh, R., Roorkiwal, M., Jaba, J., Chitikineni, A., Mishra, S.P., Sagurthi, S.R., Munghate, R., Sharma, H.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea ( Cicer arietinum L .). The Plant Genome, 14 (1). Art. e20071.

Jadhav, M.P., Patil, M.D., Hampannavar, M., S, V., Dattatreya, P., Shirasawa, K., Pasupuleti, J., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker‐assisted backcross breeding. Crop Science . In Press.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W.A., Chitikineni, A., Lam, H-M, Hickey, L.T., Croser, J.S., Bayer, P.E., Edwards, D., Crossa, J., Weckwerth, W., Millar, H., Kumar, A., Bevan, M.W. and Siddique, K.H.M. (2021) Fast-forward breeding for a food-secure world. Trends in Genetics, 37 (12). pp. 1124-1136.

Kamdar, J.H., Jasani, M.D., Ajay, B.C., Rani, K., Manivannan, N., Vasanthi, R.P., Dobariya, K.L., Pandey, M.K., Janila, P., Radhakrishnan, T., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bera, S.K. (2021) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: An insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution, 68 (2). pp. 529-549.

Bhat, J.A., Yu, D., Bohra, A., Ganie, S.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Features and applications of haplotypes in crop breeding. Communications Biology, 4 (1). Art. 1266.

Daudi, H., Shimelis, H., Mathew, I., Oteng‐Frimpong, R., Ojiewo, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution, 68 (2). pp. 581-604.

Yadav, O.P., Gupta, S.K., Govindaraj, M., Sharma, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Srivastava, R. and Mahala, R.S. (2021) Genetic gains in Pearl Millet in India: Insights into historic breeding strategies and future perspective. Frontiers in Plant Science, 12 . Art. 645038.

Valliyodan, B., Brown, A.V., Wang, J., Patil, G., Liu, Y., Otyama, P.I., Nelson, R.T., Vuong, T., Song, Q., Musket, T.A., Wagner, R., Marri, P., Reddy, S., Sessions, A., Wu, X., Grant, D., Bayer, P.E., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liu, X., Edwards, D., Xu, D., Joshi, T., Cannon, S.B. and Nguyen, H.T. (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data, 8 (1). Art. 50.

Saradadevi, G.P., Das, D., Mangrauthia, S.K., Mohapatra, S., Chikkaputtaiah, C., Roorkiwal, M., Solanki, M., Sundaram, R.M., Chirravuri, N.N., Sakhare, A.S., Kota, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mohannath, G. (2021) Genetic, epigenetic, genomic and microbial approaches to enhance salt tolerance of plants: A comprehensive review. Biology, 10 (12). Art. 1255.

Bohra, A., Rathore, A., Gandham, P., Saxena, R.K., Satheesh Naik, S.J., Dutta, D., Singh, I.P., Singh, F., Rathore, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Genome-wide comparative transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043 during the floral bud development of pigeonpea. Functional & Integrative Genomics, 21 (2). pp. 251-263.

Thudi, M., Palakurthi, R., Schnable, J.C., Chitikineni, A., Dreisigacker, S., Mace, E., Srivastava, R.K., Satyavathi, C.T., Odeny, D., Tiwari, V.K., Lam, H-M, Hong, Y.B., Singh, V.K., Li, G., Xu, Y., Chen, X., Kaila, S., Nguyen, H., Sivasankar, S., Jackson, S.A., Close, T.J., Shubo, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology, 257 . Art. 153351.

Sinha, P., Singh, V.K., Bohra, A., Kumar, A., Reif, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics, 134 . pp. 1829-1843.

Kumar, J., Sen Gupta, D., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, S. (2021) Genomics‐assisted lentil breeding: Current status and future strategies. Legume Science . Art. e71.

Bohra, A., Prasad, G., Rathore, A., Saxena, R.K., Naik, S.J.S., Pareek, S., Jha, R., Pazhamala, L., Datta, D., Pandey, G., Tiwari, A., Maurya, A.K., Soren, K.R., Akram, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Global gene expression analysis of pigeonpea with male sterility conditioned by A 2 cytoplasm. The Plant Genome, 14 (3). Art. e20132.

Soni, P., Pandey, A.K., Nayak, S.N., Pandey, M.K., Tolani, P., Pandey, S., Sudini, H.K., Bajaj, P., Fountain, J.C., Singam, P., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Global transcriptome profiling identified transcription factors, biological process, and associated pathways for pre-harvest aflatoxin contamination in groundnut. Journal of Fungi, 7 (6). p. 413.

Jin, X., Zarco-Tejada, P.J., Schmidhalter, U., Reynolds, M.P., Hawkesford, M.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Yang, T., Nie, C., Li, Z., Ming, B., Xiao, Y., Xie, Y. and Li, S. (2021) High-Throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine, 9 (1). pp. 200-231.

Bellucci, E., Mario Aguilar, O., Alseekh, S., Bett, K., Brezeanu, C., Cook, D., De la Rosa, L., Delledonne, M., Dostatny, D.F., Ferreira, J.J., Geffroy, V., Ghitarrini, S., Kroc, M., Kumar Agrawal, S., Logozzo, G., Marino, M., Mary‐Huard, T., McClean, P., Meglič, V., Messer, T., Muel, F., Nanni, L., Neumann, K., Servalli, F., Străjeru, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vasconcelos, M.W., Zaccardelli, M., Zavarzin, A., Bitocchi, E., Frontoni, E., Fernie, A.R., Gioia, T., Graner, A., Guasch, L., Prochnow, L., Oppermann, M., Susek, K., Tenaillon, M. and Papa, R. (2021) The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems. The Plant Journal . Early View.

Bohra, A., Gandham, P., Rathore, A., Thakur, V., Saxena, R.K., Naik, S.J.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Identification of microRNAs and their gene targets in cytoplasmic male sterile and fertile maintainer lines of pigeonpea. Planta, 253 (2). Art. 59.

Kushwah, A., Bhatia, D., Singh, I., Thudi, M., Singh, G., Bindra, S., Vij, S., Gill, B.S., Bharadwaj, C., Singh, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Identification of stable heat tolerance QTLs using inter-specific recombinant inbred line population derived from GPF 2 and ILWC 292. PLoS ONE, 16 (8). Art. e0254957.

Bharadwaj, C., Tripathi, S., Soren, K.R., Thudi, M., Singh, R.K., Sheoran, S., Roorkiwal, M., Patil, B.S., Chitikineni, A., Palakurthi, R., Vemula, A., Rathore, A., Kumar, Y., Chaturvedi, S.K., Mondal, B., Shanmugavadivel, P.S., Srivastava, A.K., Dixit, G.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome, 14 (1). Art. e20076.

Li, W., Huang, L., Liu, N., Pandey, M.K., Chen, Y., Cheng, L., Guo, J., Yu, B., Luo, H., Zhou, X., Huai, D., Chen, W., Yan, L., Wang, X., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2021) Key regulators of sucrose metabolism identified through comprehensive comparative transcriptome analysis in peanuts. International Journal of Molecular Sciences, 22 (14). Art. 7266.

Jha, U.C., Nayyar, H., Palakurthi, R., Jha, R., Valluri, V., Bajaj, P., Chitikineni, A., Singh, N.P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) Major QTLs and potential candidate genes for heat stress tolerance identified in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 655103.

Sharma, V., Gupta, P., Priscilla, K., SharanKumar, S., Hangargi, B., Veershetty, A., Ramrao, D.P., Suresh, S., Narasanna, R., Naik, G.R., Kumar, A., Guo, B., Zhuang, W., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Kumar, R. (2021) Metabolomics intervention towards better understanding of plant traits. Cells, 10 (2). Article 346.

Getahun, T., Tesfaye, K., Fikre, A., Haileslassie, T., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular genetic diversity and population structure in Ethiopian chickpea germplasm accessions. Diversity, 13 (6). Art. 247.

Roorkiwal, M., Pandey, S., Thavarajah, D., Hemalatha, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular mechanisms and biochemical pathways for micronutrient acquisition and storage in legumes to support biofortification for nutritional security. Frontiers in Plant Science, 12 . Art. 682842.

Saradadevi, R., Mukankusi, C., Li, L., Amongi, W., Mbiu, J.P., Raatz, B., Ariza, D., Beebe, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Huttner, E., Kinghorn, B., Banks, R., Rubyogo, J.C., Siddique, K.H.M. and Cowling, W.A. (2021) Multivariate genomic analysis and optimal contributions selection predicts high genetic gains in cooking time, iron, zinc, and grain yield in common beans in East Africa. The Plant Genome, 14 (3). Art. e20156.

Manchikatla, P.K., Kalavikatte, D., Mallikarjuna, B.P., Palakurthi, R., Khan, A.W., Jha, U.C., Bajaj, P., Singam, P., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) MutMap approach enables rapid identification of candidate genes and development of markers associated with early flowering and enhanced seed size in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 688694.

Kumar, A., Bohra, A., Mir, R.R., Sharma, R., Tiwari, A., Khan, M.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Next generation breeding in pulses: Present status and future directions. Crop Breeding and Applied Biotechnology, 21 . Art. e394221S13.

Thudi, M., Chen, Y., Pang, J., Kalavikatte, D., Bajaj, P., Roorkiwal, M., Chitikineni, A., Ryan, M.H., Lambers, H., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Novel genes and genetic loci associated with root morphological traits, phosphorus-acquisition efficiency and phosphorus-use efficiency in chickpea. Frontiers in Plant Science, 12 . Art. 636973.

Kumar, A., Rani, M., Mani, S., Shah, P., Singh, D.B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Nutritional significance and Antioxidant-Mediated antiaging effects of Finger Millet: Molecular insights and prospects. Frontiers in Sustainable Food Systems, 5 . Art. 684318.

Altman, A., Fan, L.J., Foyer, C., Cowling, W., Mittler, R., Qaim, M., Weber, A.P.M., Reynolds, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Fernie, A. (2021) Past and future milestones of plant breeding. Trends in Plant Science, 26 (6). pp. 530-538.

Commey, L., Tengey, T.K., Cobos, C.J., Dampanaboina, L., Dhillon, K.K., Pandey, M.K., Sudini, H.K., Falalou, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Burow, M.D. and Mendu, V. (2021) Peanut seed coat acts as a physical and biochemical barrier against Aspergillus flavus infection. Journal of Fungi, 7 (12). Art. 1000.

Ghatak, A., Chaturvedi, P., Bachmann, G., Valledor, L., Ramšak, Ž., Bazargani, M.M., Bajaj, P., Jegadeesan, S., Li, W., Sun, X., Gruden, K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Weckwerth, W. (2021) Physiological and proteomic signatures reveal mechanisms of superior drought resilience in Pearl Millet compared to wheat. Frontiers in Plant Science, 11 . Art. 600278.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome, 14 (3). Art. e20178.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W., Chitikineni, A., Lam, H-M, Hickey, L.T., Croser, J., Edwards, D., Farooq, M., Crossa, J., Weckwerth, W., Millar, A.H., Kumar, A., Bevan, M.W. and Siddique, K.H.M. (2021) Rapid delivery systems for future food security. Nature Biotechnology, 39 . pp. 1179-1181.

Fikre, A., Degefu, T., Geleta, T., Thudi, M., Gaur, P., Ojiewo, C., Hickey, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Rapid generation advance in chickpea for accelerated breeding gain in Ethiopia: What speed breeding imply? Ethiopian Journal of Agricultural Sciences, 31 (1).

Bhogireddy, S., Mangrauthia, S.K., Kumar, R., Pandey, A.K., Singh, S., Jain, A., Budak, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kudapa, H. (2021) Regulatory non-coding RNAs: A new frontier in regulation of plant biology. Functional & Integrative Genomics, 21 . pp. 313-330.

Ghatak, A., Schindler, F., Bachmann, G., Engelmeier, D., Bajaj, P., Brenner, M., Fragner, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Subbarao, G.V., Chaturvedi, P. and Weckwerth, W. (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils, 58 . pp. 291-306.

Bayer, P.E., Valliyodan, B., Hu, H.ORCID: 0000-0003-1070-213X, Marsh, J.I., Yuan, Y., Vuong, T.D., Patil, G., Song, Q., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lam, H‐M, Edwards, D. and Nguyen, H.T. (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome, Early View . e20109.

Srivastava, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Shukla, P. (2021) Sigma factor modulation for cyanobacterial metabolic engineering. Trends in Microbiology, 29 (3). pp. 266-277.

Parmar, S., Deshmukh, D.B., Kumar, R., Manohar, S.S., Joshi, P., Sharma, V., Chaudhari, S., Variath, M.T., Gangurde, S.S., Bohar, R., Singam, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Janila, P. and Pandey, M.K. (2021) Single seed-based high-throughput genotyping and rapid generation advancement for accelerated groundnut genetics and breeding research. Agronomy, 11 (6). Art. 1226.

Liu, H., Hu, D., Du, P., Wang, L., Liang, X., Li, H., Lu, Q., Li, S., Liu, H., Chen, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hong, Y. (2021) Single‐cell RNA‐seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 19 (11). pp. 2261-2276.

Zhang, S., Ghatak, A., Bazargani, M.M., Bajaj, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chaturvedi, P., Jiang, D. and Weckwerth, W. (2021) Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process. The Plant Journal .

Pazhamala, L.T., Kudapa, H., Weckwerth, W., Millar, A.H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Systems biology for crop improvement. The Plant Genome, 14 (2). Art. e20098.

Palakurthi, R., Jayalakshmi, V., Kumar, Y., Kulwal, P., Yasin, M., Kute, N.S., Laxuman, C., Yeri, S., Vemula, A., Rathore, A., Samineni, S., Soren, K.R., Mondal, B., Dixit, G.P., Bharadwaj, C., Chaturvedi, S.K., Gaur, P.M., Roorkiwal, M., Thudi, M., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Translational Chickpea Genomics Consortium to accelerate genetic gains in chickpea (Cicer arietinum L.). Plants, 10 (12). Article 2583.

Annabi, N., Baker, M., Boettiger, A., Chakraborty, D., Chen, Y., Corbett, K.S., Correia, B., Dahlman, J., de Oliveira, T., Ertuerk, A., Yanik, M.F., Henaff, E., Huch, M., Iliev, I.D., Jacobs, T., Junca, H., Keung, A., Kolodkin-Gal, I., Krishnaswamy, S., Lancaster, M., Macosko, E., Martínez-Núñez, M.A., Miura, K., Molloy, J., Cruz, A.O., Platt, R.J., Posey, A.D., Shao, H., Simunovic, M., Slavov, N., Takebe, T., Vandenberghe, L.H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, J. (2021) Voices of biotech research. Nature Biotechnology, 39 (3). pp. 281-286.

Xiao, Y., Liu, H., Li, H., Liu, Q., Lu, Q., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Hong, Y. (2021) Widely targeted metabolomics characterizes the dynamic changes of chemical profile in postharvest peanut sprouts grown under the dark and light conditions. LWT, 152 . Art. 112283.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquin, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X. and Liu, X. (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature .

Saxena, R.K., Hake, A., Bohra, A., Khan, A.W., Hingane, A., Sultana, R., Singh, I.P., Naik, S.J.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics, 134 (1). pp. 367-379.

Nguyen, D.T., Hayes, J.E., Atieno, J., Li, Y., Baumann, U., Pattison, A., Bramley, H., Hobson, K.A., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Colmer, T.D. and Sutton, T. (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics .

Montesinos-López, O.A., Montesinos-López, A., Mosqueda-González, B.A., Bentley, A.R., Lillemo, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Crossa, J. (2021) A new deep learning calibration method enhances Genome-Based prediction of continuous crop traits. Frontiers in Genetics, 12 . Art. 798840.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Sinha, P., Singh, V.K., Kumar, A., Zhang, Q. and Bennetzen, J.L. (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology, 56 . pp. 190-196.

Ojiewo, C.O., Janila, P., Bhatnagar-Mathur, P., Pandey, M.K., Desmae, H., Okori, P., Mwololo, J., Ajeigbe, H., Njuguna-Mungai, E., Muricho, G., Akpo, E., Gichohi-Wainaina, W.N., Variath, M.T., Radhakrishnan, T., Dobariya, K.L., Bera, S.K., Rathnakumar, A.L., Manivannan, N., Vasanthi, R.P., Kumar, M.V.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Advances in crop improvement and delivery research for nutritional quality and health benefits of groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 11 . Art. 00029.

Akpo, E., Ojiewo, C.O., Melesse, M.B., Ganga Rao, N., Mwololo, J., Manyasa, E., Ojulong, H., Harawa, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Aggravated food insecurity in COVID-19 era: Quality seed flow of adapted and nutrient-dense varieties is central to the recovery equation in the drylands. Technium: Romanian Journal of Applied Sciences and Technology, 2 (5). pp. 62-65.

Géofroy, K., Gustave, D., Laura, E.Y.L., Relique, I.A., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Clément, A. and Alexandre, D. (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49.

Akpo, E., Feleke, G., Fikre, A., Chichaybelu, M., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Analyzing pathways of nurturing informal seed production into formal private ventures for sustainable seed delivery and crop productivity: Experiences from Ethiopia. Sustainability, 12 (17). Art. 6828.

Sinha, P., Bajaj, P., Pazhamala, L.T., Nayak, S.N., Pandey, M.K., Chitikineni, A., Huai, D., Khan, A.W., Desai, A., Jiang, H., Zhuang, W., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal, 18 (11). pp. 2187-2200.

Baisakh, N., Sachdeva, S., Bharadwaj, C., Singh, R.K., Jain, P.K., Patil, B.S., Roorkiwal, M. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLoS ONE, 15 (7). Art. e0234550.

Bhaskarla, V., Zinta, G., Ford, R., Jain, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mantri, N. (2020) Comparative root transcriptomics provide insights into drought adaptation strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences, 21 (5). Art. 1781.

Subramaniam, G., Thakur, V., Saxena, R.K., Vadlamudi, S., Purohit, S., Kumar, V., Rathore, A., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports, 10 (1). Art. 10294.

Zhang, Q., Xu, M., Xia, X., Komatsuda, T., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Shi, K. (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics, 133 (5). pp. 1339-1344.

Luo, H., Pandey, M.K., Zhi, Y., Zhang, H., Xu, S., Guo, J., Wu, B., Chen, H., Ren, X., Zhou, X., Chen, Y., Chen, W., Huang, L., Liu, N., Sudini, H.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lei, Y., Liao, B. and Jiang, H. (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics, 133 (4). pp. 1133-1148.

Liu, N., Huang, L., Chen, W., Wu, B., Pandey, M.K., Luo, H., Zhou, X., Guo, J., Chen, H., Huai, D., Chen, Y., Lei, Y., Liao, B., Ren, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars by association mapping. BMC Genomic Data . Under Review.

Liu, N., Huang, L., Chen, W., Wu, B., Pandey, M.K., Luo, H., Zhou, X., Guo, J., Chen, H., Huai, D., Chen, Y., Lei, Y., Liao, B., Ren, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics, 21 (1). Art. 60.

Agarwal, G., Kudapa, H., Ramalingam, A., Choudhary, D., Sinha, P., Garg, V., Singh, V.K., Patil, G.B., Pandey, M.K., Nguyen, H.T., Guo, B., Sunkar, R., Niederhuth, C.E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Functional & Integrative Genomics, 20 (6). pp. 739-761.

Mwalongo, S., Akpo, E., Lukurugu, G.A., Muricho, G., Vernooy, R., Minja, A., Ojiewo, C., Njuguna, E., Otieno, G. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Factors influencing preferences and adoption of improved groundnut varieties among farmers in Tanzania. Agronomy, 10 (9). Art. 1271.

Jaganathan, D., Bohra, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Fine mapping and gene cloning in the post-NGS era: Advances and prospect. Theoretical and Applied Genetics, 133 (5). pp. 1791-1810.

Soni, P., Gangurde, S.S., Ortega-Beltran, A., Kumar, R., Parmar, S., Sudini, H.K., Lei, Y., Ni, X., Huai, D., Fountain, J.C., Njoroge, S., Mahuku, G., Radhakrishnan, T., Zhuang, W., Guo, B., Liao, B., Singam, P., Pandey, M.K., Bandyopadhyay, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Functional biology and molecular mechanisms of Host-Pathogen interactions for Aflatoxin contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology, 11 . Art. 00227.

Rathnakumar, A.L., Manohar, S.S., Nadaf, H.L., Patil, S.C., Deshmukh, M.P., Thirumalaisamy, P.P., Kumar, N., Lalwani, H.B., Nagaraju, P., Yenagi, B., Patil, S.S., Suryawanshi, J., Khatod, J., Kumbhar, C.T., Kathmale, D.K., Naik, K.S.S., Rajesh, P., Vemana, K., Sundaravadana, S., Premalatha, N., Variath, M.T., Chaudhari, S., Radhakrishnan, T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Janila, P. (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica, 216 (6). Art. 85.

Soren, K.R., Madugula, P., Kumar, N., Barmukh, R., Sengar, M.S., Bharadwaj, C., Sharma, P.C., Singh, S., Bhandari, A., Singh, J., Sanwal, S.K., Pal, M., P.R., S.P., Mann, A., Sagurthi, S.R., Shanmugavadivel, P.S., Siddique, K.H.M., Singh, N.P., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences, 21 (14). Art. 5058.

Bohar, R., Chitkineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genetic molecular markers to accelerate genetic gains in crops. BioTechniques, 69 (3). pp. 158-160.

Sab, S., Lokesha, R., Mannur, D.M., Somasekhar, ., Jadhav, K., Mallikarjuna, B.P., Laxuman, C., Yeri, S., Valluri, V., Bajaj, P., Chitikineni, A., Vemula, A., Rathore, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Shankergoud, I. and Thudi, M. (2020) Genome-Wide SNP discovery and mapping QTLs for seed iron and zinc concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition, 7 . Art. 559120.

Pandey, M.K., Chaudhari, S., Jarquin, D., Janila, P., Crossa, J., Patil, S.C., Sundravadana, S., Khare, D., Bhat, R.S., Radhakrishnan, T., Hickey, J.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics, 133 (11). pp. 3101-3117.

Wang, X., Xu, P., Ren, Y., Yin, L., Li, S., Wang, Y., Shi, Y., Li, H., Cao, X., Chi, X., Yu, T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yuan, M. (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports, 10 (1). Art. 13792.

Bhogireddy, S., Xavier, A., Garg, V., Layland, N., Arias, R., Payton, P., Nayak, S.N., Pandey, M.K., Puppala, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports, 10 (1). Art. 4071.

Sinha, P., Singh, V.K., Saxena, R.K., Kale, S.M., Li, Y., Garg, V., Meifang, T., Khan, A.W., Kim, K.D., Chitikineni, A., Saxena, K.B., Sameer Kumar, C.V., Liu, X., Xu, X., Jackson, S., Powell, W., Nevo, E., Searle, I.R., Lodha, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal, 18 (8). pp. 1697-1710.

Huang, L., Liu, X., Pandey, M.K., Ren, X., Chen, H., Xue, X., Liu, N., Huai, D., Chen, Y., Zhou, X., Luo, H., Chen, W., Lei, Y., Liu, K., Xiao, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2020) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal, 18 (3). pp. 779-790.

Bohra, A., Chand Jha, U., Godwin, I.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal, 18 (12). pp. 2388-2405.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomics-assisted breeding comes of age in pulses in India. Journal of Food Legumes, 33 (2). pp. 69-70.

Bohra, A., Saxena, K.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Saxena, R.K. (2020) Genomics-assisted breeding for pigeonpea improvement. Theoretical and Applied Genetics, 133 (5). pp. 1721-1737.

Saxena, R.K., Kale, S., Mir, R.R., Mallikarjuna, N., Yadav, P., Das, R.R., Molla, J., Sonnappa, M., Ghanta, A., Narasimhan, Y., Rathore, A., Kumar, C.V.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics, 133 (3). pp. 737-749.

Liu, H., Liang, X., Lu, Q., Li, H., Liu, H., Li, S., Varshney, R.ORCID: 0000-0002-4562-9131, Hong, Y. and Chen, X. (2020) Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition. Scientific Reports, 10 (1). Art. 13050.

Saxena, R.K., Molla, J., Yadav, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) High resolution mapping of restoration of fertility (Rf) by combining large population and high density genetic map in pigeonpea [Cajanus cajan (L.) Millsp]. BMC Genomics, 21 (1). Art. 460.

Khan, S.A., Chen, H., Deng, Y., Chen, Y., Zhang, C., Cai, T., Ali, N., Mamadou, G., Xie, D., Guo, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics, 133 (7). pp. 2239-2257.

Gupta, S.K., Patil, K.S., Rathore, A., Yadav, D.V., Sharma, L.D., Mungra, K.D., Patil, H.T., Gupta, S.K., Kumar, R., Chaudhary, V., Das, R.R., Kumar, A., Singh, V., Srivastava, R.K., Gupta, R., Boratkar, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rai, K.N. and Yadav, O.P. (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics, 133 (3). pp. 873-888.

Pattanashetti, S.K., Pandey, M.K., Naidu, G.K., Vishwakarma, M.K., Singh, O.K., Shasidhar, Y., Boodi, I.H., Biradar, B.D., Das, R.R., Rathore, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Morris, B. (2020) Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut (Arachis hypogaea). Plant Breeding, 139 (4). pp. 790-803.

Yu, B., Jiang, H., Pandey, M.K., Huang, L., Huai, D., Zhou, X., Kang, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sudini, H.K., Ren, X., Luo, H., Liu, N., Chen, W., Guo, J., Li, W., Ding, Y., Jiang, Y., Lei, Y. and Liao, B. (2020) Identification of two novel peanut genotypes resistant to aflatoxin production and their SNP Markers associated with resistance. Toxins, 12 (3). Art. 156.

Pandey, M.K., Gangurde, S.S., Sharma, V., Pattanashetti, S.K., Naidu, G.K., Faye, I., Hamidou, F., Desmae, H., Kane, N.A., Yuan, M., Vadez, V., Nigam, S.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Improved genetic map identified major QTLs for drought tolerance- and iron deficiency tolerance-related traits in groundnut. Genes, 12 (1). Art. 37.

Shasidhar, Y., Variath, M.T., Vishwakarma, M.K., Manohar, S.S., Gangurde, S.S., Sriswathi, M., Sudini, H.K., Dobariya, K.L., Bera, S.K., Radhakrishnan, T., Pandey, M.K., Janila, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal, 8 (1). pp. 1-15.

Roorkiwal, M., Bharadwaj, C., Barmukh, R., Dixit, G.P., Thudi, M., Gaur, P.M., Chaturvedi, S.K., Fikre, A., Hamwieh, A., Kumar, S., Sachdeva, S., Ojiewo, C.O., Tar’an, B., Wordofa, N.G., Singh, N.P., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Integrating genomics for chickpea improvement: Achievements and opportunities. Theoretical and Applied Genetics, 133 (5). pp. 1703-1720.

Akpo, E., Muricho, G., Lukurugu, G.A., Opie, H., Ojiewo, C.O. and Varshney, R.ORCID: 0000-0002-4562-9131 (2020) Legume seed production for sustainable seed supply and crop productivity: Case of groundnut in Tanzania and Uganda. Journal of Crop Improvement, 34 (4). pp. 518-539.

McCouch, S., Navabi, Z.K., Abberton, M., Anglin, N.L., Barbieri, R.L., Baum, M., Bett, K., Booker, H., Brown, G.L., Bryan, G.J., Cattivelli, L., Charest, D., Eversole, K., Freitas, M., Ghamkhar, K., Grattapaglia, D., Henry, R., Valadares Inglis, M.C., Islam, T., Kehel, Z., Kersey, P.J., King, G.J., Kresovich, S., Marden, E., Mayes, S., Ndjiondjop, M.No., Nguyen, H.T., Paiva, S.R., Papa, R., Phillips, P.W.B., Rasheed, A., Richards, C., Rouard, M., Amstalden Sampaio, M.J., Scholz, U., Shaw, P.D., Sherman, B., Staton, S.E., Stein, N., Svensson, J., Tester, M., Montenegro Valls, J.F., Varshney, R.ORCID: 0000-0002-4562-9131, Visscher, S., von Wettberg, E., Waugh, R., Wenzl, P. and Rieseberg, L.H. (2020) Mobilizing Crop Biodiversity. Molecular Plant, 13 (10). pp. 1341-1344.

Banerjee, A., Somani, V.K., Chakraborty, P., Bhatnagar, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Echeverría-Vega, A., Cuadros-Orellana, S. and Bandopadhyay, R. (2020) Molecular and Genomic Characterization of PFAB2: A Non-virulent Bacillus anthracis Strain Isolated from an Indian Hot Spring. Current Genomics, 20 (7). pp. 491-507.

Palit, P., Ghosh, R., Tolani, P., Tarafdar, A., Chitikineni, A., Bajaj, P., Sharma, M., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Molecular and physiological alterations in chickpea under elevated CO2 concentrations. Plant and Cell Physiology, 61 (8). pp. 1449-1463.

Sharma, V., Bhattacharyya, S., Kumar, R., Kumar, A., Ibañez, F., Wang, J., Guo, B., Sudini, H.K., Gopalakrishnan, S., DasGupta, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2020) Molecular basis of root nodule symbiosis between Bradyrhizobium and ‘Crack-Entry’ legume groundnut (Arachis hypogaea L.). Plants, 9 (2). Art. 276.

Scott, M.F., Ladejobi, O., Amer, S., Bentley, A.R., Biernaskie, J., Boden, S.A., Clark, M., Dell’Acqua, M., Dixon, L.E., Filippi, C.V., Fradgley, N., Gardner, K.A., Mackay, I.J., O’Sullivan, D., Percival-Alwyn, L., Roorkiwal, M., Singh, R.K., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Venturini, L., Whan, A., Cockram, J. and Mott, R. (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity, 125 (6). pp. 396-416.

Pazhamala, L.T., Chaturvedi, P., Bajaj, P., Srikanth, S., Ghatak, A., Chitikineni, A., Bellaire, A., Hingane, A., Kumar, C.V.S., Saxena, K.B., Weckwerth, W., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome, 13 (2). Art. e20028.

Peng, Z., Chen, H., Tan, L., Shu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Zhou, Z., Zhao, Z., Luo, Z., Chitikineni, A., Wang, L., Maku, J., López, Y., Gallo, M., Zhou, H., Wang, J. and Gifford, M. (2020) Natural polymorphisms in a pair of NSP2 homoeologs can cause loss of nodulation in peanut. Journal of Experimental Botany, 72 (4). pp. 1104-1118.

Gangurde, S.S., Wang, H., Yaduru, S., Pandey, M.K., Fountain, J.C., Chu, Y., Isleib, T., Holbrook, C.C., Xavier, A., Culbreath, A.K., Ozias‐Akins, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2020) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal, 18 (6). pp. 1457-1471.

Weckwerth, W., Ghatak, A., Bellaire, A., Chaturvedi, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) PANOMICS meets germplasm. Plant Biotechnology Journal, 18 (7). pp. 1507-1525.

Kumar, N., Bharadwaj, C., Soni, A., Sachdeva, S., Yadav, M.C., Pal, M., Soren, K.R., Meena, M.C., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Rana, M. (2020) Physio-morphological and molecular analysis for salt tolerance in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 90 (4). pp. 132-136.

Agarwal, G., Clevenger, J., Kale, S.M., Wang, H., Pandey, M.K., Choudhary, D., Yuan, M., Wang, X., Culbreath, A.K., Holbrook, C.C., Liu, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2020) Publisher Correction: A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports, 10 (1). Art.2244.

Zhuang, W., Wang, X., Paterson, A.H., Chen, H., Yang, M., Zhang, C., Sun, P., Zheng, Y., Wang, L., Xie, W., Chu, W., Fu, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Reply to: Evaluating two different models of peanut’s origin. Nature Genetics, 52 (6). pp. 560-563.

Obala, J., Saxena, R.K., Singh, V.K., Kale, S.M., Garg, V., Kumar, C.V.S., Saxena, K.B., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports, 10 (1). Art. 214.

Deshmukh, R., Rana, N., Liu, Y., Zeng, S., Agarwal, G., Sonah, H., Varshney, R.ORCID: 0000-0002-4562-9131, Joshi, T., Patil, G.B. and Nguyen, H.T. (2020) Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Physiologia Plantarum . Early View.

Santantonio, N., Atanda, S.A., Beyene, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Olsen, M., Jones, E., Roorkiwal, M., Gowda, M., Bharadwaj, C., Gaur, P.M., Zhang, X., Dreher, K., Ayala-Hernández, C., Crossa, J., Pérez-Rodríguez, P., Rathore, A., Gao, S.Y., McCouch, S. and Robbins, K.R. (2020) Strategies for effective use of genomic information in crop breeding programs serving Africa and South Asia. Frontiers in Plant Science, 11 . Art. 00353.

Khan, A.W., Garg, V., Roorkiwal, M., Golicz, A.A., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Super-Pangenome by integrating the wild side of a species for accelerated crop improvement. Trends in Plant Science, 25 (2). pp. 148-158.

Sinha, P., Singh, V.K., Saxena, R.K., Khan, A.W., Abbai, R., Chitikineni, A., Desai, A., Molla, J., Upadhyaya, H.D., Kumar, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal, 18 (12). pp. 2482-2490.

Zhao, J., Bayer, P.E., Ruperao, P., Saxena, R.K., Khan, A.W., Golicz, A.A., Nguyen, H.T., Batley, J., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Trait associations in the pangenome of pigeon pea (Cajanus cajan). Plant Biotechnology Journal, 18 (9). pp. 1946-1954.

Fountain, J.C., Pandey, A.K., Nayak, S.N., Bajaj, P., Wang, H., Kumar, V., Chitikineni, A., Abbas, H.K., Scully, B.T., Kemerait, R.C., Pandey, M.K., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Transcriptional responses of toxigenic and atoxigenic isolates of Aspergillus flavus to oxidative stress in aflatoxin-conducive and non-conducive media. World Mycotoxin Journal, 13 (4). pp. 443-457.

Soni, P., Nayak, S.N., Kumar, R., Pandey, M.K., Singh, N., Sudini, H.K., Bajaj, P., Fountain, J.C., Singam, P., Hong, Y., Chen, X., Zhuang, W., Liao, B., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Transcriptome analysis identified coordinated control of key pathways regulating cellular physiology and metabolism upon Aspergillus flavus infection resulting in reduced aflatoxin production in groundnut. Journal of Fungi, 6 (4). Art. 370.

Wan, L., Lei, Y., Yan, L., Liu, Y., Pandey, M.K., Wan, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Fang, J. and Liao, B. (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology, 20 (1). Art. 161.

Saxena, R.K., Hake, A., Hingane, A.J., Kumar, C.V.S., Bohra, A., Sonnappa, M., Rathore, A., Kumar, A.V., Mishra, A., Tikle, A.N., Sudhakar, C., Rajamani, S., Patil, D.K., Singh, I.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Translational Pigeonpea genomics consortium for accelerating genetic gains in Pigeonpea (Cajanus cajan L.). Agronomy, 10 (9). Art. 1289.

Pandey, M.K., Pandey, A.K., Kumar, R., Nwosu, C.V., Guo, B., Wright, G.C., Bhat, R.S., Chen, X., Bera, S.K., Yuan, M., Jiang, H., Faye, I., Radhakrishnan, T., Wang, X., Liang, X., Liao, B., Zhang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics, 133 (5). pp. 1679-1702.

Fountain, J.C., Clevenger, J.P., Nadon, B., Youngblood, R.C., Korani, W., Chang, P-K, Starr, D., Wang, H., Isett, B., Johnston, H.R., Wiggins, R., Agarwal, G., Chu, Y., Kemerait, R.C., Pandey, M.K., Bhatnagar, D., Ozias-Akins, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Scheffler, B.E., Vaughn, J.N. and Guo, B. (2020) Two new Aspergillus flavus reference genomes reveal a large insertion potentially contributing to isolate stress tolerance and aflatoxin production. G3 Genes|Genomes|Genetics, 10 (10). pp. 3515-3531.

Patel, K., Pachchigar, K.P., Saxena, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Bohra, A. (2020) Understanding molecular divergence and population structure of parental lines of CMS hybrids in pigeonpea. Journal of Food Legumes, 33 (2). pp. 82-92.

Molla, K.A., Karmakar, S., Molla, J., Bajaj, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Datta, S.K. and Datta, K. (2020) Understanding sheath blight resistance in rice: The road behind and the road ahead. Plant Biotechnology Journal, 18 (4). pp. 895-915.

Mir, R.R., Singh, U.M., Sinha, P., Dixit, S., Abbai, R., Venkateshwarlu, C., Chitikineni, A., Singh, V.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2020) Unraveling candidate genomic regions responsible for delayed leaf senescence in rice. PLoS ONE, 15 (10). Art. e0240591.

Kumar, R., Janila, P., Vishwakarma, M.K., Khan, A.W., Manohar, S.S., Gangurde, S.S., Variath, M.T., Shasidhar, Y., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Whole‐genome resequencing‐based QTL ‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal, 18 (4). pp. 992-1003.

Song, X., Sun, P., Yuan, J., Gong, K., Li, N., Meng, F., Zhang, Z., Li, X., Hu, J., Wang, J., Yang, Q., Jiao, B., Nie, F., Liu, T., Chen, W., Feng, S., Pei, Q., Yu, T., Kang, X., Zhao, W., Cui, C., Yu, Y., Wu, T., Shan, L., Liu, M., Qin, Z., Lin, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Li, X‐Q, Paterson, A.H. and Wang, X. (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal . Early View.

Palit, P., Kudapa, H., Zougmore, R., Kholova, J., Whitbread, A., Sharma, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22 . Art. 100149.

Jensen, S.E., Charles, J.R., Muleta, K., Bradbury, P. J., Casstevens, T., Deshpande, S.P., Gore, M.A., Gupta, R., Ilut, D.C., Johnson, L., Lozano, R., Miller, Z., Ramu, P., Rathore, A., Romay, M.C., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, Morris, G.P., Pressoir, G., Buckler, E.S. and Ramstein, G.P. (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome, 13 (1). Art. e20009.

Li, S., Zhu, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Zhan, J., Zheng, X., Shi, J., Wang, X., Liu, G. and Wang, H. (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal, 18 (2). pp. 568-580.

Liu, H., Pandey, M.K., Xu, Z., Rao, D., Huang, Z., Chen, M., Feng, D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hong, Y. (2019) Analysis and evaluation of quality traits of peanut varieties with near Infra-red spectroscopy technology. International Journal of Agriculture and Biology . pp. 1-8.

Yadav, P., Saxena, K.B., Hingane, A., Kumar, C.V.S., Kandalkar, V.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Saxena, R.K. (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics, 20 (1). Art. 235.

Saxena, K.B., Saxena, R.K., Hickey, L.T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Can a speed breeding approach accelerate genetic gain in pigeonpea? Euphytica, 215 (12). Art. 202.

Fountain, J.C., Yang, L., Pandey, M.K., Bajaj, P., Alexander, D., Chen, S., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology, 19 (1). Article 209.

Valliyodan, B., Cannon, S.B., Bayer, P.E., Shu, S., Brown, A.V., Ren, L., Jenkins, J., Chung, C.Y.L., Chan, T‐F, Daum, C.G., Plott, C., Hastie, A., Baruch, K., Barry, K.W., Huang, W., Patil, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Hu, H.ORCID: 0000-0003-1070-213X, Batley, J., Yuan, Y., Song, Q., Stupar, R.M., Goodstein, D.M., Stacey, G., Lam, H‐M, Jackson, S.A., Schmutz, J., Grimwood, J., Edwards, D. and Nguyen, H.T. (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal, 100 (5). pp. 1066-1082.

Sandhu, N., Subedi, S.R., Singh, V.K., Sinha, P., Kumar, S., Singh, S.P., Ghimire, S.K., Pandey, M., Yadaw, R.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports, 9 (1). Art. 9334.

Obala, J., Saxena, R.K., Singh, V.K., Kumar, C.V.S., Saxena, K.B., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics, 294 (1). pp. 57-68.

Luo, H., Pandey, M.K., Khan, A.W., Guo, J., Wu, B., Cai, Y., Huang, L., Zhou, X., Chen, Y., Chen, W., Liu, N., Lei, Y., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 17 (7). pp. 1248-1260.

Priya, M., Dhanker, O.P., Siddique, K.H.M., HanumanthaRao, B., Nair, R.M., Pandey, S., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vara Prasad, P.V. and Nayyar, H. (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics, 132 (6). pp. 1607-1638.

Yadav, S., Sandhu, N., Majumder, R.R., Dixit, S., Kumar, S., Singh, S.P., Mandal, N.P., Das, S.P., Yadaw, R.B., Singh, V.K., Sinha, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports, 9 (1). Art. 2616.

Obala, J., Saxena, R.K., Singh, V.K., Saxena, K., Kumar, C., Sameer, V., Kumar, A., Rathore, A., Pardhasaradhi, G., Patel, K., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genetic analysis of seed protein content and its association with seed weight and yield in pigeonpea. Journal of Food Legumes, 32 (2). pp. 65-69.

Khera, P., Pandey, M.K., Mallikarjuna, N., Sriswathi, M., Roorkiwal, M., Janila, P., Sharma, S., Shilpa, K., Sudini, H., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics, 294 (2). pp. 365-378.

Desmae, H., Janila, P., Okori, P., Pandey, M.K., Motagi, B.N., Monyo, E., Mponda, O., Okello, D., Sako, D., Echeckwu, C., Oteng‐Frimpong, R., Miningou, A., Ojiewo, C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Morris, B. (2019) Genetics, genomics and breeding of groundnut ( Arachis hypogaea L.). Plant Breeding, 138 (4). pp. 425-444.

Lu, Q., Hong, Y., Li, S., Liu, H., Li, H., Zhang, J., Lan, H., Liu, H., Li, X., Wen, S., Zhou, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Jiang, H., Chen, X. and Liang, X. (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics, 20 (1). Art. 799.

Jadhav, Y., Manohar, S.S., Sunkad, G., Kannalli, V.P., Pandey, M.K., Variath, M.T., Yaduru, S., Kona, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pasupuleti, J. (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding, 138 (6). pp. 748-760.

Ojiewo, C., Monyo, E., Desmae, H., Boukar, O., Mukankusi‐Mugisha, C., Thudi, M., Pandey, M.K., Saxena, R.K., Gaur, P.M., Chaturvedi, S.K., Fikre, A., Ganga Rao, N., Sameer Kumar, C.V., Okori, P., Janila, P., Rubyogo, J.C., Godfree, C., Akpo, E., Omoigui, L., Nkalubo, S., Fenta, B., Binagwa, P., Kilango, M., Williams, M., Mponda, O., Okello, D., Chichaybelu, M., Miningou, A., Bationo, J., Sako, D., Diallo, S., Echekwu, C., Umar, M.L., Oteng‐Frimpong, R., Mohammed, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ordon, F. (2019) Genomics, genetics and breeding of tropical legumes for better livelihoods of smallholder farmers. Plant Breeding, 138 (4). pp. 487-499.

Dodia, S.M., Joshi, B., Gangurde, S.S., Thirumalaisamy, P.P., Mishra, G.P., Narandrakumar, D., Soni, P., Rathnakumar, A.L., Dobaria, J.R., Sangh, C., Chitikineni, A., Chanda, S.V., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thankappan, R. (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics, 132 (4). pp. 1001-1016.

Abbai, R., Singh, V.K., Nachimuthu, V.V., Sinha, P., Selvaraj, R., Vipparla, A.K., Singh, A.K., Singh, U.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, A. (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor‐made rice with enhanced genetic gains. Plant Biotechnology Journal, 17 (8). pp. 1612-1622.

Pandey, A.K., Sudini, H.K., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2019) Hypoallergen peanut lines identified through large-scale phenotyping of global diversity panel: Providing hope toward addressing one of the major global food safety concerns. Frontiers in Genetics, 10 . Art. 01177.

Yu, B., Huai, D., Huang, L., Kang, Y., Ren, X., Chen, Y., Zhou, X., Luo, H., Liu, N., Chen, W., Lei, Y., Pandey, M.K., Sudini, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics, 20 (1). Art. 32.

Parida, S.K., Jain, A., Roorkiwal, M., Kale, S., Garg, V., Yadala, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE, 14 (3). Art. e0213999.

Gaur, P.M., Samineni, S., Thudi, M., Tripathi, S., Sajja, S.B., Jayalakshmi, V., Mannur, D.M., Vijayakumar, A.G., Ganga Rao, N.V.P.R., Ojiewo, C., Fikre, A., Kimurto, P., Kileo, R.O., Girma, N., Chaturvedi, S.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Dixit, G.P. and Link, W. (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea ( Cicer arietinum L.). Plant Breeding, 138 (4). pp. 389-400.

Garg, V., Khan, A.W., Kudapa, H., Kale, S.M., Chitikineni, A., Qiwei, S., Sharma, M., Li, C., Zhang, B., Xin, L., Kishor, P.B.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal, 17 (5). pp. 914-931.

Rezaei, M.K., Deokar, A.A., Arganosa, G., Roorkiwal, M., Pandey, S.K., Warkentin, T.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tar′an, B. (2019) Mapping quantitative trait loci for carotenoid concentration in Three F 2 populations of Chickpea. The Plant Genome, 12 (3). Art. 190067.

Rubyogo, J‐C, Akpo, E., Omoigui, L., Pooran, G., Chaturvedi, S.K., Fikre, A., Haile, D., Hakeem, A., Monyo, E., Nkalubo, S., Fenta, B., Binagwa, P., Kilango, M., Williams, M., Mponda, O., Okello, D., Chichaybelu, M., Miningou, A., Bationo, J., Sako, D., Kouyate, Z., Diallo, S., Oteng‐Frimpong, R., Yirzagla, J., Iorlamen, T., Garba, U., Mohammed, H., Ojiewo, C., Kamara, A., Varshney, R.ORCID: 0000-0002-4562-9131, Nigam, S.N., Janila, P., Nadaf, H.L., Kalemera, S. and Downes, A. (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding, 138 (4). pp. 474-486.

Arbelaez, J.D., Tandayu, E., Reveche, M.Y., Jarana, A., van Rogen, P., Sandager, L., Stolt, P., Ng, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kretzschmar, T. and Cobb, J. (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods, 15 (1). Art. 78.

Pandey, M.K., Kumar, R., Pandey, A.K., Soni, P., Gangurde, S.S., Sudini, H.K., Fountain, J.C., Liao, B., Desmae, H., Okori, P., Chen, X., Jiang, H., Mendu, V., Falalou, H., Njoroge, S., Mwololo, J., Guo, B., Zhuang, W., Wang, X., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Mitigating aflatoxin contamination in groundnut through a combination of genetic resistance and post-harvest management practices. Toxins, 11 (6). Art. 315.

Choudhary, D., Agarwal, G., Wang, H., Pandey, M.K., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144.

Gumma, M.K., Tsusaka, T.W., Mohammed, I., Chavula, G., Ganga Rao, N.V.P.R., Okori, P., Ojiewo, C.O., Varshney, R.ORCID: 0000-0002-4562-9131, Siambi, M. and Whitbread, A. (2019) Monitoring changes in the cultivation of pigeonpea and groundnut in Malawi using time series satellite imagery for sustainable food systems. Remote Sensing, 11 (12). Article 1475.

Luo, H., Pandey, M.K., Khan, A.W., Wu, B., Guo, J., Ren, X., Zhou, X., Chen, Y., Chen, W., Huang, L., Liu, N., Lei, Y., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jiang, H. (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 17 (12). pp. 2356-2369.

Saxena, K., Choudhary, A.K., Srivastava, R.K., Bohra, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding, 138 (3). pp. 243-251.

Kumar, R., Pandey, M.K., Roychoudhry, S., Nayyar, H., Kepinski, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Peg biology: Deciphering the molecular regulations involved during peanut peg development. Frontiers in Plant Science, 10 . Art. 01289.

Chanda Venkata, S.K., Nadigatla Veera Prabha Rama, G.R., Saxena, R.K., Saxena, K., Upadhyaya, H.D., Siambi, M., Silim, S.N., Reddy, K.N., Hingane, A.J., Sharma, M., Sharma, S., Lyimo, S.D., Ubwe, R., Makenge, M., Gad, K., Kimurto, P.K., Amane, M., Kanenga, K., Obong, Y., Monyo, E., Ojiewo, C., Mallela Venkata, N.K., Polineni Rao, J., Lakkireddy, P., Chourat, S., Singh, I., Sajja, S., Hirikara Beliappa, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ordon, F. (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding, 138 (4). pp. 445-454.

Chigeza, G., Boahen, S., Gedil, M., Agoyi, E., Mushoriwa, H., Denwar, N., Gondwe, T., Tesfaye, A., Kamara, A., Alamu, O.E., Chikoye, D. and Varshney, R.ORCID: 0000-0002-4562-9131 (2019) Public sector soybean (Glycine max) breeding: Advances in cultivar development in the African tropics. Plant Breeding, 138 (4). pp. 455-464.

Choudhary, M., Wani, S.H., Kumar, P., Bagaria, P.K., Rakshit, S., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics, 19 (5). pp. 685-701.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H.D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A.W., Garg, V., Chitikineni, A., Xu, D., Gaur, P.M., Singh, N.P., Chaturvedi, S.K., Nadigatla, G.V.P.R., Krishnamurthy, L., Dixit, G.P., Fikre, A., Kimurto, P.K., Sreeman, S.M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H, Edwards, D., Polavarapu, K.K.B., Penmetsa, R.V., Crossa, J., Nguyen, H.T., Siddique, K.H.M., Colmer, T.D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. and Liu, X. (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics, 51 (5). pp. 857-864.

Zwart, R.S., Thudi, M., Channale, S., Manchikatla, P.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thompson, J.P. (2019) Resistance to Plant-Parasitic nematodes in chickpea: Current status and future perspectives. Frontiers in Plant Science, 10 . Art. 00966.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Godwin, I.D., Mohapatra, T., Jones, J.D.G. and McCouch, S.R. (2019) A SWEET solution to rice blight. Nature Biotechnology, 37 (11). pp. 1280-1282.

Chen, X., Lu, Q., Liu, H., Zhang, J., Hong, Y., Lan, H., Li, H., Wang, J., Liu, H., Li, S., Pandey, M.K., Zhang, Z., Zhou, G., Yu, J., Zhang, G., Yuan, J., Li, X., Wen, S., Meng, F., Yu, S., Wang, X., Siddique, K.H.M., Liu, Z-J, Paterson, A.H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2019) Sequencing of cultivated peanut, Arachis hypogaea, yields insights into genome evolution and oil improvement. Molecular Plant, 12 (7). pp. 920-934.

Prasad, M., Bera, S.K., Kamdar, J.H., Kasundra, S.V., Patel, S.V., Jasani, M.D., Maurya, A.K., Dash, P., Chandrashekar, A.B., Rani, K., Manivannan, N., Janila, P., Pandey, M.K., Vasanthi, R.P., Dobariya, K.L., Radhakrishnan, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLoS ONE, 14 (12). Art. e0226252.

Mannur, D.M., Babbar, A., Thudi, M., Sabbavarapu, M.M., Roorkiwal, M., Yeri, S.B., Bansal, V.P., Jayalakshmi, S.K., Singh Yadav, S., Rathore, A., Chamarthi, S.K., Mallikarjuna, B.P., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Super Annigeri 1 and improved JG 74: Two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding, 39 (1). Art. 2.

Godwin, I.D., Rutkoski, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hickey, L.T. (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics, 132 (3). pp. 555-557.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Bohra, A., Singh, V.K., Thudi, M. and Saxena, R.K. (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics, 132 (3). pp. 797-816.

Mahdavi Mashaki, K., Nasrollahnezhad Ghomi, A.A., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Transcription factors evaluation in a transcriptome analysis on Chickpea (Cicer arietinum L.) under drought stress. Journal of Crop Breeding, 11 (30). pp. 133-141.

Bohra, A., Bharadwaj, C., Radhakrishnan, T., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Translational genomics and molecular breeding for enhancing precision and efficiency in crop improvement programs: Some examples in legumes. Indian Journal of Genetics and Plant Breeding, 79 (01S). 227 -240.

Sachdeva, S., Bharadwaj, C., Singh, S., Roorkiwal, M., Sharma, V., Singh, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 89 (5). pp. 834-841.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Ojiewo, C. and Monyo, E. (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market‐demand to benefit smallholder farmers and empowerment of national programmes in sub‐Saharan Africa and South Asia. Plant Breeding, 138 (4). pp. 379-388.

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M.K., Zhang, C., Chang, W-C, Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C-N, Wang, J., Deng, Y., Wang, D., Khan, A.W., Yang, Q., Cai, T., Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S.A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P.B., Pan, R-L, Paterson, A.H., Wang, X., Ming, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics, 51 (5). pp. 865-876.

Bertioli, D.J., Jenkins, J., Clevenger, J., Dudchenko, O., Gao, D., Seijo, G., Leal-Bertioli, S.C.M., Ren, L., Farmer, A.D., Pandey, M.K., Samoluk, S.S., Abernathy, B., Agarwal, G., Ballén-Taborda, C., Cameron, C., Campbell, J., Chavarro, C., Chitikineni, A., Chu, Y., Dash, S., El Baidouri, M., Guo, B., Huang, W., Kim, K.D., Korani, W., Lanciano, S., Lui, C.G., Mirouze, M., Moretzsohn, M.C., Pham, M., Shin, J.H., Shirasawa, K., Sinharoy, S., Sreedasyam, A., Weeks, N.T., Zhang, X., Zheng, Z., Sun, Z., Froenicke, L., Aiden, E.L., Michelmore, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Holbrook, C.C., Cannon, E.K.S., Scheffler, B.E., Grimwood, J., Ozias-Akins, P., Cannon, S.B., Jackson, S.A. and Schmutz, J. (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics, 51 (5). pp. 877-884.

Pandey, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sudini, H.K. and Pandey, M.K. (2019) An improved Enzyme-Linked Immunosorbent Assay (ELISA) based protocol using seeds for detection of five major peanut allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8. Frontiers in Nutrition, 6 . Art. 00068.

Agarwal, G., Clevenger, J., Kale, S.M., Wang, H., Pandey, M.K., Choudhary, D., Yuan, M., Wang, X., Culbreath, A.K., Holbrook, C.C., Liu, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports, 9 (1). Art. 18246.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Pandey, M.K., Tardieu, F., Ojiewo, C., Vadez, V., Whitbread, A.M., Siddique, K.H.M., Nguyen, H.T., Carberry, P.S. and Bergvinson, D. (2018) Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy. Journal of Experimental Botany, 69 (13). pp. 3293-3312.

Mousavi-Derazmahalleh, M., Bayer, P.E., Hane, J.K., Valliyodan, B., Nguyen, H.T., Nelson, M.N., Erskine, W., Varshney, R.K.ORCID: 0000-0002-4562-9131, Papa, R. and Edwards, D. (2018) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment, 42 (1). pp. 6-19.

Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Upadhyaya, H.D., Vadez, V., Sharma, K.K., Bhatnagar, P., Sameer Kumar, C.V., Janila, P., Srinivasan, S., Sajja, S.B., Sharma, S., Thudi, M., Roorkiwal, M., Saxena, R., Pandey, M., Ranga Rao, G.V., Sharma, M., Sudini, H., Gopalakrishnan, G., Gang Rao, N.V.P.R., Fikre, A., Ojiewo, C., Shewayrga, H., Motagi, B.N. and Okori, P. (2018) Advances in food legumes research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47.

Bera, S.K., Manohar, S.S., Variath, M.T., Chaudhari, S., Yaduru, S., Thankappan, R., Narayana, M., Kurapati, S., Pandey, M.K., Sudini, H.K., Shanmugavel, S., Kulandaivelu, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pasupuleti, J. and Link, W. (2018) Assessing variability for disease resistance and nutritional quality traits in an interspecific collection of groundnut (Arachis hypogaea). Plant Breeding, 137 (6). pp. 883-894.

Saxena, K.B., Choudhary, A.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science, 68 (2). pp. 159-167.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Kumar, A., Powell, W. and Sorrells, M.E. (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology, 45 (Part. B). pp. 205-211.

Paul, P.J., Samineni, S., Sajja, S.B., Rathore, A., Das, R.R., Chaturvedi, S.K., Lavanya, G.R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica, 214 (2). Art. 27.

Khedikar, Y., Pandey, M.K., Sujay, V., Singh, S., Nayak, S.N., Klein-Gebbinck, H.W., Sarvamangala, C., Mukri, G., Garg, V., Upadhyaya, H.D., Nadaf, H.L., Gowda, M.V.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2018) Correction to: Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding, 38 (6). Article number: 78.

Lu, Q., Li, H., Hong, Y., Zhang, G., Wen, S., Li, X., Zhou, G., Li, S., Liu, H., Liu, H., Liu, Z., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Liang, X. (2018) Corrigendum: Genome sequencing and analysis of the peanut B-genome progenitor (Arachis ipaensis). Frontiers in Plant Science, 9 . Article 1099.

Saxena, R.K., Rathore, A., Bohra, A., Yadav, P., Das, R.R., Khan, A.W., Singh, V.K., Chitikineni, A., Singh, I.P., Kumar, C.V.S., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Development and application of High‐Density axiom cajanus SNP array with 56K SNPs to understand the genome architecture of released cultivars and founder genotypes. The Plant Genome, 11 (3). Art. 180005.

Gayathri, M., Shirasawa, K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Bhat, R.S. (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1). Art. 10.

Kaashyap, M., Ford, R., Kudapa, H., Jain, M., Edwards, D., Varshney, R.ORCID: 0000-0002-4562-9131 and Mantri, N. (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports, 8 . Article number: 4855.

Patil, G., Vuong, T.D., Kale, S., Valliyodan, B., Deshmukh, R., Zhu, C., Wu, X., Bai, Y., Yungbluth, D., Lu, F., Kumpatla, S., Shannon, J.G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal, 16 (11). pp. 1939-1953.

Sehgal, A., Sita, K., Siddique, K.H.M., Kumar, R., Bhogireddy, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, HanumanthaRao, B., Nair, R.M., Prasad, P.V.V. and Nayyar, H. (2018) Drought or/and Heat-Stress effects on seed filling in food crops: Impacts on functional biochemistry, seed yields, and nutritional quality. Frontiers in Plant Science, 9 . Art. 01705.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Wang, J., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y. and Xu, X. (2018) Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 36 (4). p. 368.

Choudhary, N., Bawa, V., Paliwal, R., Singh, B., Bhat, M.A., Mir, J.I., Gupta, M., Sofi, P.A., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mir, R.R. (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). Art. e0191700.

Anggraeni, T.D.A., Satyawan, D., Kang, Y.J., Ha, J., Kim, M.Y., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources: Characterization and Utilization, 16 (4). pp. 334-342.

Ye, H., Roorkiwal, M., Valliyodan, B., Zhou, L., Chen, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany, 69 (13). pp. 3267-3277.

Singh, S., Gupta, S.K., Thudi, M., Das, R.R., Vemula, A., Garg, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rathore, A., Pahuja, S.K. and Yadav, D.V. (2018) Genetic diversity patterns and heterosis prediction based on SSRs and SNPs in hybrid parents of Pearl Millet. Crop Science, 58 (6). pp. 2379-2390.

Pushpavalli, S.N.C.V.L., Yamini, K.N., Anuradha, ., Rajani, ., Kumar, G., Rani, C.S., Sudhakar, C., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kumar, C.V.S. (2018) Genetic variability and correlation in pigeonpea genotypes. Electronic Journal of Plant Breeding, 9 (1). pp. 343-349.

Obala, J., Saxena, R.K., Singh, V.K., Vechalapu, S., Das, R., Rathore, A., Sameer Kumar, C.V., Saxena, K., Tongoona, P., Sibiya, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian Journal of Crop Science, 12 (12). pp. 1859-1865.

Ha, J., Shim, S., Lee, T., Kang, Y.J., Hwang, W.J., Jeong, H., Laosatit, K., Lee, J., Kim, S.K., Satyawan, D., Lestari, P., Yoon, M.Y., Kim, M.Y., Chitikineni, A., Tanya, P., Somta, P., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2018) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal, 17 (2). pp. 517-530.

Lu, Q., Li, H., Hong, Y., Zhang, G., Wen, S., Li, X., Zhou, G., Li, S., Liu, H., Liu, H., Liu, Z., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Liang, X. (2018) Genome sequencing and analysis of the peanut B-genome progenitor (Arachis ipaensis). Frontiers in Plant Science, 9 . Article 604.

Hima Kumari, P., Anil Kumar, S., Ramesh, K., Sudhakar Reddy, P., Nagaraju, M., Bhanu Prakash, A., Shah, T., Henderson, A., Srivastava, R., Rajasheker, G., Chitikineni, A., Varshney, R.ORCID: 0000-0002-4562-9131, Rathnagiri, P., Lakshmi Narasu, M. and Kavi Kishor, P. (2018) Genome-wide identification and analysis of arabidopsis sodium proton antiporter (NHX) and human sodium proton exchanger (NHE) homologs in Sorghum bicolor. Genes, 9 (5). Article 236.

Wang, X., Xu, P., Yin, L., Ren, Y., Li, S., Shi, Y., Alcock, T.D., Xiong, Q., Qian, W., Chi, X., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yuan, M. (2018) Genomic and transcriptomic analysis identified gene clusters and candidate genes for oil content in peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter, 36 (3). pp. 518-529.

Roorkiwal, M., Jarquin, D., Singh, M.K., Gaur, P.M., Bharadwaj, C., Rathore, A., Howard, R., Srinivasan, S., Jain, A., Garg, V., Kale, S., Chitikineni, A., Tripathi, S., Jones, E., Robbins, K.R., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports, 8 (1). Art. 11701.

Bharathi, A., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2018) Genotypic Diversity and Population Structure of ICRISAT Composite Collection of Finger Millet [Eleusine coracana (L.) Gaertn]. Trends in Biosciences, 11 (25). pp. 3369-3373.

Agarwal, G., Clevenger, J., Pandey, M.K., Wang, H., Shasidhar, Y., Chu, Y., Fountain, J.C., Choudhary, D., Culbreath, A.K., Liu, X., Huang, G., Wang, X., Deshmukh, R., Holbrook, C.C., Bertioli, D.J., Ozias-Akins, P., Jackson, S.A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal, 16 (11). pp. 1954-1967.

Garg, T., Mallikarjuna, B.P., Thudi, M., Samineni, S., Singh, S., Sandhu, J.S., Kaur, L., Singh, I., Sirari, A., Basandrai, A.K., Basandrai, D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica, 214 (3). Art. 45.

Bera, S.K., Kamdar, J.H., Kasundra, S.V., Dash, P., Maurya, A.K., Jasani, M.D., Chandrashekar, A.B., Manivannan, N., Vasanthi, R.P., Dobariya, K.L., Pandey, M.K., Janila, P., Radhakrishnan, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica, 214 (9). Art.162.

Foyer, C.H., Siddique, K.H.M., Tai, A.P.K., Anders, S., Fodor, N., Wong, F-L, Ludidi, N., Chapman, M.A., Ferguson, B.J., Considine, M.J., Zabel, F., Prasad, P.V.V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nguyen, H.T. and Lam, H-M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment, 42 (1). pp. 373-385.

Paul, P., Samineni, S., Thudi, M., Sajja, S., Rathore, A., Das, R., Khan, A., Chaturvedi, S., Lavanya, G., Varshney, R.ORCID: 0000-0002-4562-9131 and Gaur, P. (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences, 19 (8). Art. 2166.

Sachdeva, S., Bharadwaj, C., Sharma, V., Patil, B.S., Soren, K.R., Roorkiwal, M., Varshney, R.ORCID: 0000-0002-4562-9131 and Bhat, K.V. (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153.

Saxena, R.K., Patel, K., Sameer Kumar, C.V., Tyagi, K., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics, 131 (8). pp. 1605-1614.

Liang, Z., Gupta, S.K., Yeh, C-T, Zhang, Y., Ngu, D.W., Kumar, R., Patil, H.T., Mungra, K.D., Yadav, D.V., Rathore, A., Srivastava, R.K., Gupta, R., Yang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Schnable, P.S. and Schnable, J.C. (2018) Phenotypic data from inbred parents can improve genomic prediction in Pearl Millet hybrids. G3 Genes|Genomes|Genetics, 8 (7). pp. 2513-2522.

Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholová, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology, 18 (1). Art. 29.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Tuberosa, R. and Tardieu, F. (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany, 69 (13). pp. 3175-3179.

Fountain, J.C., Koh, J., Yang, L., Pandey, M.K., Nayak, S.N., Bajaj, P., Zhuang, W-J, Chen, Z-Y, Kemerait, R.C., Lee, R.D., Chen, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports, 8 (1). Art. 3430.

Prasad, M., Mahdavi Mashaki, K., Garg, V., Nasrollahnezhad Ghomi, A.A., Kudapa, H., Chitikineni, A., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE, 13 (6). Art. e0199774.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment, 41 (9). pp. 2209-2225.

Shirasawa, K., Bhat, R.S., Khedikar, Y.P., Sujay, V., Kolekar, R.M., Yeri, S.B., Sukruth, M., Cholin, S., Asha, B., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, M.V.C. (2018) Sequencing analysis of genetic loci for resistance for late leaf spot and rust in peanut (Arachis hypogaea L.). Frontiers in Plant Science, 9 . Art. 01727.

Paudel, D., Kannan, B., Yang, X., Harris-Shultz, K., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Altpeter, F. and Wang, J. (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports, 8 (1). Art. 14419.

Chaturvedi, S.K., Jha, S.K., Singh, N.P., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Technological and policy intervention for increasing chickpea production in India. Pulse India, 3 (1). pp. 7-12.

Mahdavi Mashaki, K., Nasrollahnezhad Ghomi, A.A., Thudi, M., Zaynali Nezhad, K., Yamchi, A., Soltanloo, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Transcriptome analysis of Iranian local chickpea in response to drought stress. Journal of Crop Breeding, 9 (24). pp. 1-9.

Singh, M., Sharma, S.K., Singh, B., Malhotra, N., Chandora, R., Sarker, A., Singh, K., Gupta, D. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Widening the genetic base of cultivated gene pool following introgression from wild Lens taxa. Plant Breeding, 137 (4). pp. 470-485.

Fikre, A., Korbu, L., Eshete, M., Bekele, D., Girma, N., Mohamed, R., Assefe, S., Admasu, D., Tilahun, G., Tesfaye, T., Kefelegn, N., Tadesse, T., Rezene, Y., Moges, Y., Kumar, S., Bishaw, Z., Guar, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ahmed, S. (2018) A decade of research progress in chickpea and lentil breeding and genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113.

Saxena, K.B., Saxena, R.K., Sharma, S., Sameer Kumar, C.V., Sultana, R., von Wettberg, E.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica, 214 (12). Art. 222.

Burgarella, C., Cubry, P., Kane, N.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mariac, C., Liu, X., Shi, C., Thudi, M., Couderc, M., Xu, X., Chitikineni, A., Scarcelli, N., Barnaud, A., Rhoné, B., Dupuy, C., François, O., Berthouly-Salazar, C. and Vigouroux, Y. (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution, 2 (9). pp. 1377-1380.

Nayak, S.N., Agarwal, G., Pandey, M.K., Sudini, H.K., Jayale, A.S., Purohit, S., Desai, A., Wan, L., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (1). Art. 9659.

Saxena, R.K., Obala, J., Sinjushin, A., Kumar, C.V.S., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784.

Luo, H., Ren, X., Li, Z., Xu, Z., Li, X., Huang, L., Zhou, X., Chen, Y., Chen, W., Lei, Y., Liao, B., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Guo, B., Jiang, X., Liu, F. and Jiang, H. (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (1). Art. 58.

Saxena, R.K., Singh, V.K., Kale, S.M., Tathineni, R., Parupalli, S., Kumar, V., Garg, V., Das, R.R., Sharma, M., Yamini, K.N., Muniswamy, S., Ghanta, A., Rathore, A., Kumar, C.V.S., Saxena, K.B., Kishor, P.B.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1). Art. 1911.

Rasheed, A., Hao, Y., Xia, X., Khan, A., Xu, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and He, Z. (2017) Crop breeding chips and genotyping platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064.

Pandey, M.K., Agarwal, G., Kale, S.M., Clevenger, J., Nayak, S.N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H.D., Vishwakarma, M.K., Leal-Bertioli, S., Liang, X., Bertioli, D.J., Guo, B., Jackson, S.A., Ozias-Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Development and evaluation of a high density genotyping ‘Axiom_Arachis’ array with 58 K SNPs for accelerating genetics and breeding in groundnut. Scientific Report, 7 (1). Art. 40577.

Roorkiwal, M., Jain, A., Kale, S.M., Doddamani, D., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal, 16 (4). pp. 890-901.

Iquebal, M.A., Soren, K.R., Gangwar, P., Shanmugavadivel, P.S., Aravind, K., Singla, D., Jaiswal, S., Jasrotia, R.S., Chaturvedi, S.K., Singh, N.P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rai, A. and Kumar, D. (2017) Discovery of putative herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Science, 8 . Art. 00958.

Halder, U., Banerjee, A., Chaudhry, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mantri, S. and Bandopadhyay, R. (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). Art. e00339-17.

Atieno, J., Li, Y., Langridge, P., Dowling, K., Brien, C., Berger, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Sutton, T. (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1). Art. 1300.

Sita, K., Sehgal, A., HanumanthaRao, B., Nair, R.M., Vara Prasad, P.V., Kumar, S., Gaur, P.M., Farooq, M., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nayyar, H. (2017) Food legumes and rising temperatures: Effects, adaptive functional mechanisms specific to reproductive growth stage and strategies to improve heat tolerance. Frontiers in Plant Science, 8 . Art. 01658.

Pazhamala, L.T., Purohit, S., Saxena, R.K., Garg, V., Krishnamurthy, L., Verdier, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054.

Pandey, M.K., Wang, H., Khera, P., Vishwakarma, M.K., Kale, S.M., Culbreath, A.K., Holbrook, C.C., Wang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2017) Genetic dissection of novel QTLs for resistance to leaf spots and tomato spotted wilt virus in peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 . Art. 00025.

Zhao, J., Huang, L., Ren, X., Pandey, M.K., Wu, B., Chen, Y., Zhou, X., Chen, W., Xia, Y., Li, Z., Luo, H., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2017) Genetic variation and association mapping of seed-related traits in cultivated peanut (Arachis hypogaea L.) using single-locus simple sequence repeat markers. Frontiers in Plant Science, 8 . Art. 3389.

Xia, Y., Li, R., Bai, G., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Baum, M., Yan, G. and Guo, P. (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (1). Art. 7870.

Parupalli, S., Saxena, R.K., Sameer Kumar, C.V., Sharma, M., Singh, V.K., Vechalapu, S., Kavikishor, P.B., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244.

Vishwakarma, M.K., Kale, S.M., Sriswathi, M., Naresh, T., Shasidhar, Y., Garg, V., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genome-Wide discovery and deployment of insertions and deletions markers provided greater insights on species, genomes, and sections relationships in the Genus Arachis. Frontiers in Plant Science, 8 . Art. 02064.

Zhao, C., Qiu, J., Agarwal, G., Wang, J., Ren, X., Xia, H., Guo, B., Ma, C., Wan, S., Bertioli, D.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Wang, X. (2017) Genome-Wide discovery of microsatellite markers from diploid progenitor species, Arachis duranensis and A. ipaensis, and their application in cultivated peanut (A. hypogaea). Frontiers in Plant Science, 8 . Art. 01209.

Garg, V., Agarwal, G., Pazhamala, L.T., Nayak, S.N., Kudapa, H., Khan, A.W., Doddamani, D., Sharma, M., Kavi Kishor, P.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genome-Wide identification, characterization, and expression analysis of small RNA biogenesis purveyors reveal their role in regulation of biotic stress responses in three legume crops. Frontiers in Plant Science, 8 . Art. 00488.

Clevenger, J., Chu, Y., Chavarro, C., Agarwal, G., Bertioli, D.J., Leal-Bertioli, S.C.M., Pandey, M.K., Vaughn, J., Abernathy, B., Barkley, N.A., Hovav, R., Burow, M., Nayak, S.N., Chitikineni, A., Isleib, T.G., Holbrook, C.C., Jackson, S.A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Ozias-Akins, P. (2017) Genome-wide SNP genotyping resolves signatures of selection and tetrasomic recombination in peanut. Molecular Plant, 10 (2). pp. 309-322.

Lin, Y., Min, J., Lai, R., Wu, Z., Chen, Y., Yu, L., Cheng, C., Jin, Y., Tian, Q., Liu, Q., Liu, W., Zhang, C., Lin, L., Hu, Y., Zhang, D., Thu, M., Zhang, Z., Liu, S., Zhong, C., Fang, X., Wang, J., Yang, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Yin, Y. and Lai, Z. (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14.

Crossa, J., Pérez-Rodríguez, P., Cuevas, J., Montesinos-López, O., Jarquin, D., de los Campos, G., Burgueño, J., González-Camacho, J.M., Pérez-Elizalde, S., Beyene, Y., Dreisigacker, S., Singh, R., Zhang, X., Gowda, M., Roorkiwal, M., Rutkoski, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genomic selection in plant breeding: Methods, models, and perspectives. Trends in Plant Science, 22 (11). pp. 961-975.

Purushothaman, R., Krishnamurthy, L., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44 (2). pp. 235-252.

Saxena, R.K., Kale, S.M., Kumar, V., Parupali, S., Joshi, S., Singh, V., Garg, V., Das, R.R., Sharma, M., Yamini, K.N., Ghanta, A., Rathore, A., Sameer Kumar, C.V., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1). Art. 1813.

Sharma, S., Pandey, M.K., Sudini, H.K., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Harnessing genetic diversity of Wild Arachis species for genetic enhancement of cultivated peanut. Crop Science, 57 (3). pp. 1121-1131.

Tardieu, F., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398.

Singh, V.K., Khan, A.W., Saxena, R.K., Sinha, P., Kale, S.M., Parupalli, S., Kumar, V., Chitikineni, A., Vechalapu, S., Sameer Kumar, C.V., Sharma, M., Ghanta, A., Yamini, K.N., Muniswamy, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 15 (7). pp. 906-914.

Pratap, A., Chaturvedi, S.K., Tomar, R., Rajan, N., Malviya, N., Thudi, M., Saabale, P.R., Prajapati, U., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics, 292 (6). pp. 1237-1245.

Mallikarjuna, B.P., Samineni, S., Thudi, M., Sajja, S.B., Khan, A.W., Patil, A., Viswanatha, K.P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2017) Molecular mapping of flowering time major genes and QTLs in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 . Art. 01140.

Shasidhar, Y., Vishwakarma, M.K., Pandey, M.K., Janila, P., Variath, M.T., Manohar, S.S., Nigam, S.N., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular mapping of oil content and fatty acids using dense genetic maps in groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 . Art. 00794.

Sachdeva, S., Bharadwaj, C., Sharma, V., Kumar, N., Bhat, K.V., Patil, B.S., Soren, K.R., Chaturvedi, S.K., Roorkiwal, M., Chauhan, S.K. and Varshney, R.ORCID: 0000-0002-4562-9131 (2017) Morpho-physiological grouping of chickpea (Cicerarietinum L.) genotypes on the basis of their response to drought stress. International Journal of Tropical Agriculture, 35 (1). pp. 5-13.

Bohra, A., Jha, R., Pandey, G., Patil, P.G., Saxena, R.K., Singh, I.P., Singh, D., Mishra, R.K., Mishra, A., Singh, F., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2017) New hypervariable SSR markers for diversity analysis, hybrid purity testing and trait mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 . Art. 00377.

Kumari, P.H., Kumar, S.A., Sivan, P., Katam, R., Suravajhala, P., Rao, K.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kishor, P.B.K. (2017) Overexpression of a plasma membrane bound Na+/H+ Antiporter-Like Protein (SbNHXLP) confers salt tolerance and improves fruit yield in tomato by maintaining Ion homeostasis. Frontiers in Plant Science, 7 . Art. 02027.

Thudi, M., Roorkiwal, M., Kudapa, H., Chaturvedi, S.K., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Wang, J., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y. and Xu, X. (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 35 (10). pp. 969-976.

Saxena, R.K., Sameer Kumar, C.V., Bohra, A., Singh, I.P., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Pigeonpea research for enhancing crop productivity. Pulse India, 2 (7). pp. 8-10.

Pandey, M.K., Khan, A.W., Singh, V.K., Vishwakarma, M.K., Shasidhar, Y., Kumar, V., Garg, V., Bhat, R.S., Chitikineni, A., Janila, P., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal, 15 (8). pp. 927-941.

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Root traits confer grain yield advantages under terminal drought in chickpea ( Cicer arietinum L.). Field Crops Research, 201 . pp. 146-161.

Zongo, A., Khera, P., Sawadogo, M., Shasidhar, Y., Sriswathi, M., Vishwakarma, M.K., Sankara, P., Ntare, B.R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Desmae, H. (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15 . pp. 132-137.

Saxena, K., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Prasad, M. (2017) Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea. Plant Breeding, 136 (6). pp. 954-957.

Devasena, N., Anitha, B.K., Manivannan, N., Nallathambi, G., Janila, P., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Validation of SSR markers linked to oil content in groundnut (Arachis hypogaea L.). Journal of Oilseeds Research, 34 (2). pp. 70-75.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K., Upadhyaya, H.D., Khan, A.W., Yu, Y., Kim, C., Rathore, A., Kim, D., Kim, J., An, S., Kumar, V., Anuradha, G., Yamini, K.N., Zhang, W., Muniswamy, S., Kim, J-S, Penmetsa, R.V., von Wettberg, E. and Datta, S.K. (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics, 49 (7). pp. 1082-1088.

Hradilová, I., Trněný, O., Válková, M., Cechová, M., Janská, A., Prokešová, L., Aamir, K., Krezdorn, N., Rotter, B., Winter, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Soukup, A., Bednář, P., Hanáček, P. and Smýkal, P. (2017) A combined comparative transcriptomic, metabolomic, and anatomical analyses of two key domestication traits: Pod dehiscence and seed dormancy in pea (Pisum sp.). Frontiers in Plant Science, 8 . Art. 00542.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Hickey, J.M., Xun, X., Marshall, D.F., Wang, J., Edwards, D. and Ribaut, J-M (2016) Analytical and decision support tools for Genomics-Assisted Breeding. Trends in Plant Science, 21 (4). pp. 354-363.

Jacob, S., Sajjalaguddam, R.R., Kumar, K.V.K., Varshney, R.ORCID: 0000-0002-4562-9131 and Sudini, H.K. (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology, 82 (2). pp. 96-104.

Williams, A.H., Sharma, M., Thatcher, L.F., Azam, S., Hane, J.K., Sperschneider, J., Kidd, B.N., Anderson, J.P., Ghosh, R., Garg, G., Lichtenzveig, J., Kistler, H.C., Shea, T., Young, S., Buck, S-A.G., Kamphuis, L.G., Saxena, R., Pande, S., Ma, L-J, Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, K.B. (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (1). Art. 191.

Ghatak, A., Chaturvedi, P., Nagler, M., Roustan, V., Lyons, D., Bachmann, G., Postl, W., Schröfl, A., Desai, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Weckwerth, W. (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143 . pp. 122-135.

Parida, S.K., Pazhamala, L.T., Agarwal, G., Bajaj, P., Kumar, V., Kulshreshtha, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Deciphering transcriptional programming during pod and seed development using RNA-Seq in Pigeonpea (Cajanus cajan). PLoS ONE, 11 (10). Art. e0164959.

Huang, L., Ren, X., Wu, B., Li, X., Chen, W., Zhou, X., Chen, Y., Pandey, M.K., Jiao, Y., Luo, H., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (1). Art. 39478.

Punnuri, S.M., Wallace, J.G., Knoll, J.E., Hyma, K.E., Mitchell, S.E., Buckler, E.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, B.P. (2016) Development of a High‐Density linkage map and tagging leaf spot resistance in Pearl Millet using Genotyping‐by‐Sequencing markers. The Plant Genome, 9 (2).

Chen, X., Li, H., Pandey, M.K., Yang, Q., Wang, X., Garg, V., Li, H., Chi, X., Doddamani, D., Hong, Y., Upadhyaya, H., Guo, H., Khan, A.W., Zhu, F., Zhang, X., Pan, L., Pierce, G.J., Zhou, G., Krishnamohan, K.A.V.S., Chen, M., Zhong, N., Agarwal, G., Li, S., Chitikineni, A., Zhang, G-Q, Sharma, S., Chen, N., Liu, H., Janila, P., Li, S., Wang, M., Wang, T., Sun, J., Li, X., Li, C., Wang, M., Yu, L., Wen, S., Singh, S., Yang, Z., Zhao, J., Zhang, C., Yu, Y., Bi, J., Zhang, X., Liu, Z-J, Paterson, A.H., Wang, S., Liang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yu, S. (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790.

Banerjee, A., Halder, U., Chaudhry, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mantri, S. and Bandopadhyay, R. (2016) Draft genome sequence of the Nonpathogenic, thermotolerant, and exopolysaccharide-producing Bacillus anthracis Strain PFAB2 from Panifala hot water spring in West Bengal, India. Genome Announcements, 4 (6). Art. e01346-16.

Pandey, M.K., Roorkiwal, M., Singh, V.K., Ramalingam, A., Kudapa, H., Thudi, M., Chitikineni, A., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Emerging genomic tools for legume breeding: Current status and future prospects. Frontiers in Plant Science, 7 . Art. 00455.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Science, 242 . pp. 98-107.

Sreevidya, M., Gopalakrishnan, S., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95.

Kumar, V., Khan, A.W., Saxena, R.K., Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) First‐generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (8). pp. 1673-1681.

Pasupuleti, J., Pandey, M.K., Manohar, S.S., Variath, M.T., Nallathambi, P., Nadaf, H.L., Sudini, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, R. (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaeaL.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (3). pp. 355-366.

Smýkal, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Singh, V.K., Coyne, C.J., Domoney, C., Kejnovský, E. and Warkentin, T. (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280.

Sharma, M., Sengupta, A., Ghosh, R., Agarwal, G., Tarafdar, A., Nagavardhini, A., Pande, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (1). Art. 37353.

Roorkiwal, M., Rathore, A., Das, R.R., Singh, M.K., Jain, A., Srinivasan, S., Gaur, P.M., Chellapilla, B., Tripathi, S., Li, Y., Hickey, J.M., Lorenzo, A., Sutton, T., Crossa, J., Jannink, J-L and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome-Enabled prediction models for yield related traits in chickpea. Frontiers in Plant Science, 7 . Art. 01666.

Agarwal, G., Garg, V., Kudapa, H., Doddamani, D., Pazhamala, L.T., Khan, A.W., Thudi, M., Lee, S-H and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (7). pp. 1563-1577.

Janila, P., Variath, M.T., Pandey, M.K., Desmae, H., Motagi, B.N., Okori, P., Manohar, S.S., Rathnakumar, A.L., Radhakrishnan, T., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genomic tools in groundnut breeding program: Status and perspectives. Frontiers in Plant Science, 7 . Art. 00289.

Saxena, R.K., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511.

Abberton, M., Batley, J., Bentley, A., Bryant, J., Cai, H., Cockram, J., Costa de Oliveira, A., Cseke, L.J., Dempewolf, H., De Pace, C., Edwards, D., Gepts, P., Greenland, A., Hall, A.E., Henry, R., Hori, K., Howe, G.T., Hughes, S., Humphreys, M., Lightfoot, D., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortiz, R., Paterson, A.H., Tuberosa, R., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yano, M. (2016) Global agricultural intensification during climate change: A role for genomics. Plant Biotechnology Journal, 14 (4). pp. 1095-1098.

Saxena, K., Sameer Kumar, C.V., Hingane, A., Kumar, M.V.N., Vijaykumar, R., Saxena, R., Patil, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144.

Sameer Kumar, C.V., Wani, S.P., Nagesh Kumar, M.V., Jaganmohan Rao, P., Saxena, K.B., Hingane, A.J., Sudhakar, C., Pushpavalli, S.N.V.C.L., Yamini, K.N., Shruthi, H.B., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Hybrid Technology–a new vista in pigeonpea breeding. The Journal of Research PJTSAU, 44 (4). pp. 1-13.

Saxena, K.B., Sameer Kumar, C.V., Saxena, R.K., Vijaykumar, R., Singh, I.P., Hingane, A.J., Mula, M.G., Patil, S.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32.

Chen, W., Yao, Q., Patil, G.B., Agarwal, G., Deshmukh, R.K., Lin, L., Wang, B., Wang, Y., Prince, S.J., Song, L., Xu, D., An, Y.C., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2016) Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Frontiers in Plant Science, 7 . Art. 01044.

Sinha, P., Pazhamala, L.T., Singh, V.K., Saxena, R.K., Krishnamurthy, L., Azam, S., Khan, A.W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Identification and validation of selected universal stress protein domain containing drought-responsive genes in pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 6 . Art. 01065.

Vishwakarma, M.K., Pandey, M.K., Shasidhar, Y., Manohar, S.S., Nagesh, P., Janila, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Prasad, M. (2016) Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding, 135 (3). pp. 367-375.

Gaur, P.M., Singh, M.K., Samineni, S., Sajja, S.B., Jukanti, A.K., Kamatam, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209 (1). pp. 253-260.

Zhang, J., Khera, P., Pandey, M.K., Wang, H., Feng, S., Qiao, L., Culbreath, A.K., Kale, S., Wang, Jianping, Holbrook, C.C., Zhuang, W., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Mapping Quantitative Trait Loci of resistance to tomato spotted wilt virus and leaf spots in a recombinant inbred line population of peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLoS ONE, 11 (7). Art. e0158452.

Janila, P., Pandey, M.K., Shasidhar, Y., Variath, M.T., Sriswathi, M., Khera, P., Manohar, S.S., Nagesh, P., Vishwakarma, M.K., Mishra, G.P., Radhakrishnan, T., Manivannan, N., Dobariya, K.L., Vasanthi, R.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles ( ahFAD2A and ahFAD2B ) enhances oil quality in high and low oil containing peanut genotypes. Plant Science, 242 . pp. 203-213.

Varma Penmetsa, R., Carrasquilla‐Garcia, N., Bergmann, E.M., Vance, L., Castro, B., Kassa, M.T., Sarma, B.K., Datta, S., Farmer, A.D., Baek, J‐M, Coyne, C.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wettberg, E.J.B. and Cook, D.R. (2016) Multiple post‐domestication origins of kabuli chickpea through allelic variation in a diversification‐associated transcription factor. New Phytologist, 211 (4). pp. 1440-1451.

Foyer, C.H., Lam, H-M, Nguyen, H.T., Siddique, K.H.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Colmer, T.D., Cowling, W., Bramley, H., Mori, T.A., Hodgson, J.M., Cooper, J.W., Miller, A.J., Kunert, K., Vorster, J., Cullis, C., Ozga, J.A., Wahlqvist, M.L., Liang, Y., Shou, H., Shi, K., Yu, J., Fodor, N., Kaiser, B.N., Wong, F-L, Valliyodan, B. and Considine, M.J. (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (8). Art. 16112.

Singh, V.K., Khan, A.W., Saxena, R.K., Kumar, V., Kale, S.M., Sinha, P., Chitikineni, A., Pazhamala, L.T., Garg, V., Sharma, M., Sameer Kumar, C.V., Parupalli, S., Vechalapu, S., Patil, S., Muniswamy, S., Ghanta, A., Yamini, K.N., Dharmaraj, P.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Next‐generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea ( C ajanus cajan ). Plant Biotechnology Journal, 14 (5). pp. 1183-1194.

Fountain, J.C., Bajaj, P., Pandey, M., Nayak, S.N., Yang, L., Kumar, V., Jayale, A.S., Chitikineni, A., Zhuang, W., Scully, B.T., Lee, R.D., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (1). Art. 38747.

Sameer Kumar, C.V., Singh, I.P., Vijay Kumar, R., Patil, S.B., Tathineni, R., Mula, M.G., Saxena, R.K., Hingane, A.J., Rathore, A., Ravinder Reddy, C.H., Nagesh Kumar, M.V., Sudhakar, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). pp. 8-10.

Kaoneka, S.R., Saxena, R.K., Silim, S.N., Odeny, D.A., Ganga Rao, N.V.P.R., Shimelis, H.A., Siambi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Léon, J. (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154.

Mula, M.G., Sameer Kumar, C.V., Ravinder Reddy, C.H., Monyo, E., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Pigeonpea seed systems in Asia. Legume Perspectives (11). pp. 44-45.

Kolekar, R.M., Sujay, V., Shirasawa, K., Sukruth, M., Khedikar, Y.P., Gowda, M.V.C., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156.

Singh, V.K., Khan, A.W., Jaganathan, D., Thudi, M., Roorkiwal, M., Takagi, H., Garg, V., Kumar, V., Chitikineni, A., Gaur, P.M., Sutton, T., Terauchi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal, 14 (11). pp. 2110-2119.

Kumar, C.V., Singh, I.P., Patil, S.B., Mula, M.G., Kumar, R.V., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Recent Advances in Pigeonpea [Cajanus cajan (l.) Millspaugh) Research. International Journal of Economic Plants, 3 (1). pp. 13-15.

Thudi, M., Chitikineni, A., Liu, X., He, W., Roorkiwal, M., Yang, W., Jian, J., Doddamani, D., Gaur, P.M., Rathore, A., Samineni, S., Saxena, R.K., Xu, D., Singh, N.P., Chaturvedi, S.K., Zhang, G., Wang, J., Datta, S.K., Xu, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (1). Art. 38636.

Fountain, J.C., Bajaj, P., Nayak, S.N., Yang, L., Pandey, M.K., Kumar, V., Jayale, A.S., Chitikineni, A., Lee, R.D., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Responses of Aspergillus flavus to oxidative stress are related to fungal development regulator, antioxidant enzyme, and secondary metabolite biosynthetic gene expression. Frontiers in Microbiology, 7 . Art. 02048.

Gumma, M.K., Charyulu Deevi, K., Mohammed, I.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P. and Whitbread, A.M. (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (8). pp. 1955-1972.

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H.D., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea ( Cicer arietinum L.). Field Crops Research, 197 . pp. 10-27.

Saxena, R.K., Saxena, K.B., Sameer Kumar, C.V., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51.

Janila, P., Rupavatharam, S., Sameer Kumar, C.V., Samineni, S., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Technologies for Intensification of Production and Uses of Grain Legumes for Nutrition Security. Proceedings of the Indian National Science Academy, 82 . pp. 1541-1553.

Garg, R., Shankar, R., Thakkar, B., Kudapa, H., Krishnamurthy, L., Mantri, N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Bhatia, S. and Jain, M. (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (1). Art. 19228.

Wan, L., Li, B., Pandey, M.K., Wu, Y., Lei, Y., Yan, L., Dai, X., Jiang, H., Zhang, J., Wei, G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2016) Transcriptome analysis of a new peanut seed coat mutant for the physiological regulatory mechanism involved in seed coat cracking and pigmentation. Frontiers in Plant Science, 7 . Art. 01491.

Samineni, S., Kamatam, S., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461.

Thudi, M., Khan, A.W., Kumar, V., Gaur, P.M., Katta, K., Garg, V., Roorkiwal, M., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (S1). Art. 10.

Bertioli, D.J., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E.K.S., Liu, X., Gao, D., Clevenger, J., Dash, S., Ren, L., Moretzsohn, M.C., Shirasawa, K., Huang, W., Vidigal, B., Abernathy, B., Chu, Y., Niederhuth, C.E., Umale, P., Araújo, A.C.G., Kozik, A., Do Kim, K., Burow, M.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, X., Zhang, X., Barkley, N., Guimarães, P.M., Isobe, S., Guo, B., Liao, B., Stalker, H.T., Schmitz, R.J., Scheffler, B.E., Leal-Bertioli, S.C.M., Xun, X., Jackson, S.A., Michelmore, R. and Ozias-Akins, P. (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (4). pp. 438-446.

Gaur, P.M., Samineni, S., Tripathi, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308.

Wang, H., Khera, P., Huang, B., Yuan, M., Katam, R., Zhuang, W., Harris-Shultz, K., Moore, K.M., Culbreath, A.K., Zhang, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Xie, L. and Guo, B. (2015) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465.

Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Cai, H., Cakir, M., Cseke, L.J., Cockram, J., de Oliveira, A.C., De Pace, C., Dempewolf, H., Ellison, S., Gepts, P., Greenland, A., Hall, A., Hori, K., Hughes, S., Humphreys, M.W., Iorizzo, M., Ismail, A.M., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortiz, R., Paterson, A.H., Simon, P.W., Tohme, J., Tuberosa, R., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wullschleger, S.D., Yano, M. and Prasad, M. (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science, 6 . Article 563.

Purushothaman, R., Thudi, M., Krishnamurthy, L., Upadhyaya, H.D., Kashiwagi, J., Gowda, C.L.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174 . pp. 1-11.

Sinha, P., Saxena, K.B., Saxena, R.K., Singh, V.K., Suryanarayana, V., Sameer Kumar, C.V., Katta, M.A.V.S.K., Khan, A.W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Association of nad7a Gene with cytoplasmic male sterility in pigeonpea. The Plant Genome, 8 (2). pp. 1-12.

Deokar, A.A., Kondawar, V., Kohli, D., Aslam, M., Jain, P.K., Karuppayil, S.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Srinivasan, R. (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46.

Roorkiwal, M., Thudi, M., Gaur, P.M., Upadhyaya, H.D., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives, 7 . pp. 7-9.

Doddamani, D., Khan, A.W., Katta, M.A.V.S.K., Agarwal, G., Thudi, M., Ruperao, P., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database, 2015 . Art. bav078.

Ali, L., Azam, S., Rubio, J., Kudapa, H., Madrid, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Castro, P., Chen, W., Gil, J. and Millan, T. (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485.

Srikanth, S., Saxena, R.K., Rao, M.V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mallikarjuna, N. (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (2). pp. 289-302.

Kang, Y.J., Satyawan, D., Shim, S., Lee, T., Lee, J., Hwang, W.J., Kim, S.K., Lestari, P., Laosatit, K., Kim, K.H., Ha, T.J., Chitikineni, A., Kim, M.Y., Ko, J-M, Gwag, J-G, Moon, J-K, Lee, Y-H, Park, B-S, Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (1). Art. 8069.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Evaluation of broad-spectrum Streptomyces sp. for plant growth promotion traits in Chickpea (Cicer arietinum L.). The Philippine Agricultural Scientist, 98 (3). pp. 270-278.

Ramalingam, A., Kudapa, H., Pazhamala, L.T., Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Gene Expression and yeast Two-Hybrid studies of 1R-MYB transcription factor mediating drought stress response in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 . Art. 01117.

Wang, M.L., Khera, P., Pandey, M.K., Wang, H., Qiao, L., Feng, S., Tonnis, B., Barkley, N.A., Pinnow, D., Holbrook, C.C., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2015) Genetic Mapping of QTLs controlling fatty acids provided insights into the genetic control of fatty acid synthesis pathway in peanut (Arachis hypogaea L.). PLoS ONE, 10 (4). Art. e0119454.

Yang, K., Tian, Z., Chen, C., Luo, L., Zhao, B., Wang, Z., Yu, L., Li, Y., Sun, Y., Li, W., Chen, Y., Li, Y., Zhang, Y., Ai, D., Zhao, J., Shang, C., Ma, Y., Wu, B., Wang, M., Gao, L., Sun, D., Zhang, P., Guo, F., Wang, W., Li, Y., Wang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, J., Ling, H-Q and Wan, P. (2015) Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proceedings of the National Academy of Sciences, 112 (43). pp. 13213-13218.

Saxena, R.K., Saxena, K.B., Pazhamala, L.T., Patel, K., Parupalli, S., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genomics for greater efficiency in pigeonpea hybrid breeding. Frontiers in Plant Science, 6 . Art. 00793.

Pazhamala, L., Saxena, R.K., Singh, V.K., Sameer Kumar, C.V., Kumar, V., Sinha, P., Patel, K., Obala, J., Kaoneka, S.R., Tongoona, P., Shimelis, H.A., Gangarao, N.V.P.R., Odeny, D., Rathore, A., Dharmaraj, P.S., Yamini, K.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 . Art. 00050.

Jaganathan, D., Thudi, M., Kale, S., Azam, S., Roorkiwal, M., Gaur, P.M., Kishor, P.B.K., Nguyen, H., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571.

Srivastava, S., Zheng, Y., Kudapa, H., Jagadeeswaran, G., Hivrale, V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Sunkar, R. (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235 . pp. 46-57.

Bayer, P.E., Ruperao, P., Mason, A.S., Stiller, J., Chan, C-K.K., Hayashi, S., Long, Y., Meng, J., Sutton, T., Visendi, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Batley, J. and Edwards, D. (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047.

Hong, Y., Pandey, M.K., Liu, Y., Chen, X., Liu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liang, X. and Huang, S. (2015) Identification and evaluation of Single-Nucleotide polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) based on Amplicon sequencing combined with High Resolution Melting (HRM) analysis. Frontiers in Plant Science, 6 . Art. 01068.

Agarwal, G., Sabbavarapu, M.M., Singh, V.K., Thudi, M., Sheelamary, S., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica, 205 (2). pp. 381-394.

Chen, H., Zhang, C., Cai, T.C., Deng, Y., Zhou, S., Zheng, Y., Ma, S., Tang, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2015) Identification of low Ca2+stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnology Journal, 14 (2). pp. 682-698.

Faye, I., Pandey, M.K., Hamidou, F., Rathore, A., Ndoye, O., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647.

Hickey, J.M., Gorjanc, G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nettelblad, C. (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov Model. Crop Science, 55 (5). pp. 1934-1946.

Smýkal, P., Coyne, C.J., Ambrose, M.J., Maxted, N., Schaefer, H., Blair, M.W., Berger, J., Greene, S.L., Nelson, M.N., Besharat, N., Vymyslický, T., Toker, C., Saxena, R.K., Roorkiwal, M., Pandey, M.K., Hu, J., Li, Y.H., Wang, L.X., Guo, Y., Qiu, Li J., Redden, R.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104.

Huang, B.E., Verbyla, K.L., Verbyla, A.P., Raghavan, C., Singh, V.K., Gaur, P., Leung, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Cavanagh, C.R. (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017.

Jadhav, A.A., Rayate, S.J., Mhase, L.B., Thudi, M., Chitikineni, A., Harer, P.N., Jadhav, A.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kulwal, P.L. (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics, 94 (2). pp. 279-286.

Khera, P., Saxena, R., Sameer Kumar, C.V., Saxena, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Mitochondrial SSRs and their utility in distinguishing wild species, CMS lines and maintainer lines in pigeonpea (Cajanus cajan L.). Euphytica, 206 (3). pp. 737-746.

Katta, M.A.V.S.K., Khan, A.W., Doddamani, D., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) NGS-QCbox and raspberry for parallel, automated and rapid quality control analysis of Large-Scale next generation sequencing (Illumina) data. PLoS ONE, 10 (10). Art. e0139868.

Gopalakrishnan, S., Sathya, A., Vijayabharathi, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, C.L.L. and Krishnamurthy, L. (2015) Plant growth promoting rhizobia: Challenges and opportunities. 3 Biotech, 5 (4). pp. 355-377.

Jenko, J., Gorjanc, G., Cleveland, M.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Whitelaw, C.B.A., Woolliams, J.A. and Hickey, J.M. (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (1). Art. 55.

Kale, S.M., Jaganathan, D., Ruperao, P., Chen, C., Punna, R., Kudapa, H., Thudi, M., Roorkiwal, M., Katta, M.A.V.S.K., Doddamani, D., Garg, V., Kishor, P.B.K., Gaur, P.M., Nguyen, H.T., Batley, J., Edwards, D., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports, 5 (1). Art. 15296.

Surender Reddy, P., Jogeswar, G., Rasineni, G.K., Maheswari, M., Reddy, A.R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kavi Kishor, P.B. (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94 . pp. 104-113.

Ramalingam, A., Kudapa, H., Pazhamala, L.T., Weckwerth, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Proteomics and metabolomics: Two emerging areas for legume improvement. Frontiers in Plant Science, 6 . Art. 01116.

Fountain, J.C., Khera, P., Yang, L., Nayak, S.N., Scully, B.T., Lee, R.D., Chen, Z-Y, Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237.

Kashiwagi, J., Krishnamurthy, L., Purushothaman, R., Upadhyaya, H.D., Gaur, P.M., Gowda, C.L.L., Ito, O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 . pp. 47-54.

Sinha, P., Saxena, R.K., Singh, V.K., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Selection and validation of housekeeping genes as reference for gene expression studies in Pigeonpea (Cajanus cajan) under heat and salt stress conditions. Frontiers in Plant Science, 6 . Art. 01071.

Chen, X., Yang, Q., Li, H., Li, H., Hong, Y., Pan, L., Chen, N., Zhu, F., Chi, X., Zhu, W., Chen, M., Liu, H., Yang, Z., Zhang, E., Wang, T., Zhong, N., Wang, M., Liu, H., Wen, S., Li, X., Zhou, G., Li, S., Wu, H., Varshney, R.ORCID: 0000-0002-4562-9131, Liang, X. and Yu, S. (2015) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaeaL.). Plant Biotechnology Journal, 14 (5). pp. 1215-1224.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kudapa, H., Pazhamala, L., Chitikineni, A., Thudi, M., Bohra, A., Gaur, P.M., Janila, P., Fikre, A., Kimurto, P. and Ellis, N. (2015) Translational genomics in agriculture: Some examples in grain legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194.

Pushpavalli, R., Krishnamurthy, L., Thudi, M., Gaur, P.M., Rao, M.V., Siddique, K.H.M., Colmer, T.D., Turner, N.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (1). Art. 124.

Sukruth, M., Paratwagh, S.A., Sujay, V., Kumari, V., Gowda, M.V.C., Nadaf, H.L., Motagi, B.N., Lingaraju, S., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bhat, R.S. (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351.

Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (1). Art. 31.

Ojiewo, C., Keatinge, D.J.D.H., Hughes, J., Tenkouano, A., Nair, R., Varshney, R.ORCID: 0000-0002-4562-9131, Siambi, M., Monyo, E., Ganga-Rao, N.V.P.R. and Silim, S. (2015) The role of vegetables and legumes in assuring food, nutrition, and income security for vulnerable groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210.

Roorkiwal, M., Nayak, S.N., Thudi, M., Upadhyaya, H.D., Brunel, D., Mournet, P., This, D., Sharma, P.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 . Art. 00248.

Mir, R.R., Kudapa, H., Srikanth, S., Saxena, R.K., Sharma, A., Azam, S., Saxena, K., Varma Penmetsa, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678.

Doddamani, D., Katta, M.A.V.S.K., Khan, A.W., Agarwal, G., Shah, T.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (1). Art. 212.

Zhu, F., Han, J., Liu, S., Chen, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2014) Cloning, expression pattern analysis and subcellular localization of resveratrol synthase gene in peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 05 (24). pp. 3619-3631.

Zhu, W., Chen, X., Li, H., Zhu, F., Hong, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409.

Kudapa, H., Azam, S., Sharpe, A.G., Taran, B., Li, R., Deonovic, B., Cameron, C., Farmer, A.D., Cannon, S.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using Sanger and next generation sequencing platforms: Development and applications. PLoS ONE, 9 (1). Art. e86039.

Sharma, M., Nagavardhini, A., Thudi, M., Ghosh, R., Pande, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (1). Art.. 454.

Kumari, V., Gowda, M.V.C., Tasiwal, V., Pandey, M.K., Bhat, R.S., Mallikarjuna, N., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2-3). pp. 110-119.

Gaur, P., Srinivasan, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2014) Drought and heat tolerance in chickpea. Legume Perspectives (3). pp. 15-17.

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Lalitha, N., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2014) Enhancement of the use and impact of germplasm in crop improvement. Plant Genetic Resources, 12 (S1). S155-S159.

Gopalakrishnan, S., Vadlamudi, S., Bandikinda, P., Sathya, A., Vijayabharathi, R., Rupela, O., Kudapa, H., Katta, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169 (1). pp. 40-48.

Roorkiwal, M., von Wettberg, E.J., Upadhyaya, H.D., Warschefsky, E., Rathore, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers. PLoS ONE, 9 (7). Art. e102016.

Thudi, M., Upadhyaya, H.D., Rathore, A., Gaur, P.M., Krishnamurthy, L., Roorkiwal, M., Nayak, S.N., Chaturvedi, S.K., Basu, P.S., Gangarao, N.V.P.R., Fikre, A., Kimurto, P., Sharma, P.C., Sheshashayee, M.S., Tobita, S., Kashiwagi, J., Ito, O., Killian, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches. PLoS ONE, 9 (5). Art. e96758.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Nayak, S.N., Gaur, P.M., Kashiwagi, J., Krishnamurthy, L., Jaganathan, D., Koppolu, J., Bohra, A., Tripathi, S., Rathore, A., Jukanti, A.K., Jayalakshmi, V., Vemula, A., Singh, S.J., Yasin, M., Sheshshayee, M.S. and Viswanatha, K.P. (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462.

Prasad, M., Saxena, R.K., von Wettberg, E., Upadhyaya, H.D., Sanchez, V., Songok, S., Saxena, K., Kimurto, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetic diversity and demographic history of Cajanus spp. illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). Art. e88568.

Kang, Y.J., Kim, S.K., Kim, M.Y., Lestari, P., Kim, K.H., Ha, B-K, Jun, T.H., Hwang, W.J., Lee, T., Lee, J., Shim, S., Yoon, M.Y., Jang, Y.E., Han, K.S., Taeprayoon, P., Yoon, N., Somta, P., Tanya, P., Kim, K.S., Gwag, J-G, Moon, J-K, Lee, Y-H, Park, B-S, Bombarely, A., Doyle, J.J., Jackson, S.A., Schafleitner, R., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S-H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (1). Art. 5443.

Wang, L., Yu, S., Tong, C., Zhao, Y., Liu, Y., Song, C., Zhang, Y., Zhang, X., Wang, Y., Hua, W., Li, D., Li, D., Li, F., Yu, J., Xu, C., Han, X., Huang, S., Tai, S., Wang, J., Xu, X., Li, Y., Liu, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wang, J. and Zhang, X. (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (2). Art. R39.

Afonso-Grunz, F., Molina, C., Hoffmeier, K., Rycak, L., Kudapa, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Drevon, J-J, Winter, P. and Kahl, G. (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science, 5 . Art. 00325.

Pandey, M.K., Upadhyaya, H.D., Rathore, A., Vadez, V., Sheshshayee, M.S., Sriswathi, M., Govil, M., Kumar, A., Gowda, M.V.C., Sharma, S., Hamidou, F., Kumar, V.A., Khera, P., Bhat, R.S., Khan, A.W., Singh, S., Li, H., Monyo, E., Nadaf, H.L., Mukri, G., Jackson, S.A., Guo, B., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomewide association studies for 50 agronomic traits in peanut using the ‘Reference Set’ comprising 300 genotypes from 48 countries of the Semi-Arid Tropics of the World. PLoS ONE, 9 (8). Art. e105228.

Millan, T., Madrid, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomic resources in chickpea. Legume Perspectives . pp. 12-14.

Lee, S-H, Tuberosa, R., Jackson, S.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics of plant genetic resources: A gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5.

Thudi, M., Gaur, P.M., Krishnamurthy, L., Mir, R.R., Kudapa, H., Fikre, A., Kimurto, P., Tripathi, S., Soren, K.R., Mulwa, R., Bharadwaj, C., Datta, S., Chaturvedi, S.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology, 41 (11). pp. 1178-1190.

Bohra, A., Pandey, M.K., Jha, U.C., Singh, B., Singh, I.P., Datta, D., Chaturvedi, S.K., Nadarajan, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics, 127 (6). pp. 1263-1291.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Terauchi, R. and McCouch, S.R. (2014) Harvesting the promising fruits of genomics: Applying genome sequencing technologies to crop breeding. PLoS Biology, 12 (6). Art. e1001883.

Wan, L., Wu, Y., Huang, J., Dai, X., Lei, Y., Yan, L., Jiang, H., Zhang, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional & Integrative Genomics, 14 (3). pp. 467-477.

Pandey, M.K., Wang, M.L., Qiao, L., Feng, S., Khera, P., Wang, H., Tonnis, B., Barkley, N.A., Wang, J., Holbrook, C.C., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaeaL.). BMC Genetics, 15 (1). Art. 133.

Prasad, M., Azam, S., Rathore, A., Shah, T.M., Telluri, M., Amindala, B.P., Ruperao, P., Katta, M.A.V.S.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) An Integrated SNP Mining and Utilization (ISMU) pipeline for next generation sequencing data. PLoS ONE, 9 (7). Art. e101754.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mir, R.R., Bhatia, S., Thudi, M., Hu, Y., Azam, S., Zhang, Y., Jaganathan, D., You, F.M., Gao, J., Riera-Lizarazu, O. and Luo, M-C (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73.

Ali, L., Madrid, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Azam, S., Millan, T., Rubio, J. and Gil, J. (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Janila, P., Nigam, S.N., Sudini, H., Gowda, M.V.C., Sriswathi, M., Radhakrishnan, T., Manohar, S.S. and Nagesh, P. (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mohan, S.M., Gaur, P.M., Chamarthi, S.K., Singh, V.K., Srinivasan, S., Swapna, N., Sharma, M., Pande, S., Singh, S. and Kaur, L. (2014) Marker‐Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7 (1).

Garg, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Jain, M. (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5 . Art. 00398.

Upadhyaya, H.D., Dwivedi, S.L., Vadez, V., Hamidou, F., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liao, B. (2014) Multiple resistant and nutritionally dense germplasm identified from mini core collection in peanut. Crop Science, 54 (2). pp. 679-693.

Kim, D.H., Kaashyap, M., Rathore, A., Das, R.R., Parupalli, S., Upadhyaya, H.D., Gopalakrishnan, S., Gaur, P.M., Singh, S., Kaur, J., Yasin, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 513-517.

Vetriventhan, M., Upadhyaya, H.D., Anandakumar, C.R., Senthilvel, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Parzies, H.K. (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435.

Varshney, R.ORCID: 0000-0002-4562-9131, Thudi, M., Upadhyaya, H., Dwivedi, S., Udupa, S., Furman, B., Baum, M. and Hoisington, D. (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120.

Saxena, R.K., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Structural variations in plant genomes. Briefings in Functional Genomics, 13 (4). pp. 296-307.

Ruperao, P., Chan, C-K.K., Azam, S., Karafiátová, M., Hayashi, S., Čížková, J., Saxena, R.K., Šimková, H., Song, C., Vrána, J., Chitikineni, A., Visendi, P., Gaur, P.M., Millan, T., Singh, K.B., Taran, B., Wang, J., Batley, J., Doležel, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2014) A chromosomal genomics approach to assess and validate thedesiandkabulidraft chickpea genome assemblies. Plant Biotechnology Journal, 12 (6). pp. 778-786.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mohan, S.M., Gaur, P.M., Gangarao, N.V.P.R., Pandey, M.K., Bohra, A., Sawargaonkar, S.L., Chitikineni, A., Kimurto, P.K., Janila, P., Saxena, K.B., Fikre, A., Sharma, M., Rathore, A., Pratap, A., Tripathi, S., Datta, S., Chaturvedi, S.K., Mallikarjuna, N., Anuradha, G., Babbar, A., Choudhary, A.K., Mhase, M.B., Bharadwaj, Ch., Mannur, D.M., Harer, P.N., Guo, B., Liang, X., Nadarajan, N. and Gowda, C.L.L. (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134.

Kim, D.H., Parupalli, S., Azam, S., Lee, S-H and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 . Art. 300.

Tuteja, R., Saxena, R.K., Davila, J., Shah, T., Chen, W., Xiao, Y-L, Fan, G., Saxena, K.B., Alverson, A.J., Spillane, C., Town, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four cajanus genotypes. DNA Research, 20 (5). pp. 485-495.

Gupta, P.K., Balyan, H.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gill, K.S. (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132 (5). pp. 431-432.

Yeri, S.B., Shirasawa, K., Pandey, M.K., Gowda, M.V.C., Sujay, V., Shriswathi, M., Nadaf, H.L., Motagi, B.N., Lingaraju, S., Bhat, A.R.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Krishnaraj, P.U., Bhat, R.S. and Link, W. (2013) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaeaL.). Plant Breeding, 133 (1). pp. 80-85.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Song, C., Saxena, R.K., Azam, S., Yu, S., Sharpe, A.G., Cannon, S., Baek, J., Rosen, B.D., Tar'an, B., Millan, T., Zhang, X., Ramsay, L.D., Iwata, A., Wang, Y., Nelson, W., Farmer, A.D., Gaur, P.M., Soderlund, C., Penmetsa, R.V., Xu, C., Bharti, A.K., He, W., Winter, P., Zhao, S., Hane, J.K., Carrasquilla-Garcia, N., Condie, J.A., Upadhyaya, H.D., Luo, M-C, Thudi, M., Gowda, C.L.L., Singh, N.P., Lichtenzveig, J., Gali, K.K., Rubio, J., Nadarajan, N., Dolezel, J., Bansal, K.C., Xu, X., Edwards, D., Zhang, G., Kahl, G., Gil, J., Singh, K.B., Datta, S.K., Jackson, S.A., Wang, J. and Cook, D.R. (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31 (3). pp. 240-246.

Gowda, C.L.L., Upadhyaya, H.D., Sharma, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Dwivedi, S.L. (2013) Exploiting genomic resources for efficient conservation and use of Chickpea, Groundnut, and Pigeonpea collections for crop improvement. The Plant Genome, 6 (3).

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Chamarthi, S.K., Krishnamurthy, L., Tripathi, S., Kashiwagi, J., Samineni, S., Singh, V.K., Thudi, M. and Jaganathan, D. (2013) Fast‐Track introgression of “ QTL‐hotspot” for root traits and other drought tolerance traits in JG 11, an elite and leading variety of chickpea. The Plant Genome, 6 (3).

Kudapa, H., Ramalingam, A., Nayakoti, S., Chen, X., Zhuang, W-J, Liang, X., Kahl, G., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 40 (12). p. 1221.

Wang, H., Pandey, M.K., Qiao, L., Qin, H., Culbreath, A.K., He, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Scully, B.T. and Guo, B. (2013) Genetic mapping and quantitative trait loci analysis for disease resistance using F 2 and F 5 Generation‐based genetic maps derived from ‘Tifrunner’ × ‘GT‐C20’ in peanut. The Plant Genome, 6 (3). pp. 1-10.

Janila, P., Nigam, S.N., Pandey, M.K., Nagesh, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Science, 4 . Art. 00023.

Saxena, K.B., Kumar, R.V., Tikle, A.N., Saxena, M.K., Gautam, V.S., Rao, S.K., Khare, D.K., Chauhan, Y.S., Saxena, R.K., Reddy, B.V.S., Sharma, D., Reddy, L.J., Green, J.M., Faris, D.G., Nene, Y.L., Mula, M., Sultana, R., Srivastava, R.K., Gowda, C.L.L., Sawargaonkar, S.L., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gupta, P. (2013) ICPH 2671 – the world's first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485.

Liu, Z., Feng, S., Pandey, M.K., Chen, X., Culbreath, A.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2013) Identification of expressed resistance gene analogs from Peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461.

Shirasawa, K., Bertioli, D.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Moretzsohn, M.C., Leal-Bertioli, S.C.M., Thudi, M., Pandey, M.K., Rami, J-F, Fonceka, D., Gowda, M.V.C., Qin, H., Guo, B., Hong, Y., Liang, X., Hirakawa, H., Tabata, S. and Isobe, S. (2013) Integrated consensus map of cultivated peanut and wild relatives reveals structures of the A and B genomes of Arachis and divergence of the legume genomes. DNA Research, 20 (2). pp. 173-184.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M. and Nguyen, H.T. (2013) Legume Genomics: From genomic resources to molecular breeding. The Plant Genome, 6 (3). pp. 1-7.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kudapa, H. (2013) Legume biology: The basis for crop improvement. Functional Plant Biology, 40 (12). v-viii.

Upadhyaya, H.D., Dronavalli, N., Dwivedi, S.L., Kashiwagi, J., Krishnamurthy, L., Pande, S., Sharma, H.C., Vadez, V., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2013) Mini Core collection as a resource to identify new sources of variation. Crop Science, 53 (6). pp. 2506-2517.

Mudaraddi, B., Saxena, K.B., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Molecular diversity among wild relatives of Cajanus cajan (L.) Millsp. African Journal of Biotechnology, 12 (24). pp. 3797-3801.

Sabbavarapu, M.M., Sharma, M., Chamarthi, S.K., Swapna, N., Rathore, A., Thudi, M., Gaur, P.M., Pande, S., Singh, S., Kaur, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133.

Krishnamurthy, L., Kashiwagi, J., Upadhyaya, H.D., Gowda, C.L.L., Gaur, P.M., Singh, S., Purushothaman, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Partitioning coefficient—A trait that contributes to drought tolerance in chickpea. Field Crops Research, 149 . pp. 354-365.

Rajaram, V., Nepolean, T., Senthilvel, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vadez, V., Srivastava, R.K., Shah, T.M., Supriya, A., Kumar, S., Ramana Kumari, B., Bhanuprakash, A., Lakshmi Narasu, M., Riera-Lizarazu, O. and Hash, C.T. (2013) Pearl millet [Pennisetum glaucum(L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (1). Art. 159.

Khera, P., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Pest and diseases: Old and new threats – Modern breeding tools to tailor new crop cultivars. Sécheresse, 24 (4). pp. 261-273.

Sharma, S., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2013) Pre-breeding for diversification of primary gene pool and genetic enhancement of grain legumes. Frontiers in Plant Science, 4 . Art. 309.

Guo, B., Pandey, M.K., He, G., Zhang, X., Liao, B., Culbreath, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nwosu, V., Wilson, R.F. and Stalker, H.T. (2013) Recent advances in molecular genetic linkage maps of cultivated peanut. Peanut Science, 40 (2). pp. 95-106.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Seeking sustainable protein sources for Asia and Sub-Saharan Africa. iCommunity Newsletter .

Xia, Y., Li, R., Ning, Z., Bai, G., Siddique, K.H.M., Yan, G., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, P. (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). Art. e56816.

Khera, P., Upadhyaya, H.D., Pandey, M.K., Roorkiwal, M., Sriswathi, M., Janila, P., Guo, Y., McKain, M.R., Nagy, E.D., Knapp, S.J., Leebens‐Mack, J., Conner, J.A., Ozias‐Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Single nucleotide Polymorphism–based genetic diversity in the Reference Set of Peanut ( Arachis spp.) by developing and applying cost‐effective kompetitive allele specific polymerase chain reaction genotyping assays. The Plant Genome, 6 (3). pp. 1-11.

Roorkiwal, M., Sawargaonkar, S.L., Chitikineni, A., Thudi, M., Saxena, R.K., Upadhyaya, H.D., Vales, M.I., Riera‐Lizarazu, O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform. The Plant Genome, 6 (2). Art. plantgenome2013.05.0017.

Kashiwagi, J., Krishnamurthy, L., Gaur, P.M., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tobita, S. (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 . pp. 88-95.

Krishnamurthy, L., Kashiwagi, J., Tobita, S., Ito, O., Upadhyaya, H.D., Gowda, C.L.L., Gaur, P.M., Sheshshayee, M.S., Singh, S., Vadez, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 40 (12). pp. 1350-1361.

Pandey, M.K., Monyo, E., Ozias-Akins, P., Liang, X., Guimaraes, P., Nigam, S.N., Upadhyaya, H.D., Janila, P., Zhang, X., Guo, B., Cook, D.R., Bertioli, D.J., Michelmore, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kudapa, H., Roorkiwal, M., Thudi, M., Pandey, M.K., Saxena, R.K., Chamarthi, S.K., S, Murali Mohan, Mallikarjuna, N., Upadhyaya, H., Gaur, P.M., Krishnamurthy, L., Saxena, K.B., Nigam, S.N. and Pande, S. (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820.

Vetriventhan, M., Upadhyaya, H.D., Anandakumar, C.R., Senthilvel, S., Parzies, H.K., Bharathi, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223.

Vadez, V., Krishnamurthy, L., Thudi, M., Anuradha, C., Colmer, T.D., Turner, N.C., Siddique, K.H.M., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Ribaut, J-M, Buckler, E.S., Tuberosa, R., Rafalski, J.A. and Langridge, P. (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30 (12). pp. 1172-1176.

Azam, S., Thakur, V., Ruperao, P., Shah, T., Balaji, J., Amindala, B.P., Farmer, A.D., Studholme, D.J., May, G.D., Edwards, D., Jones, J.D.G. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. American Journal of Botany, 99 (2). pp. 186-192.

Thudi, M., Li, Y., Jackson, S.A., May, G.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11.

Chen, X., Zhu, W., Azam, S., Li, H., Zhu, F., Li, H., Hong, Y., Liu, H., Zhang, E., Wu, H., Yu, S., Zhou, G., Li, S., Zhong, N., Wen, S., Li, X., Knapp, S.J., Ozias-Akins, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liang, X. (2012) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Wang, H., Penmetsa, R.V., Yuan, M., Gong, L., Zhao, Y., Guo, B., Farmer, A.D., Rosen, B.D., Gao, J., Isobe, S., Bertioli, D.J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Cook, D.R. and He, G. (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (1). Art. 10.

Mallikarjuna, N., Saxena, K., Lakshmi, J., Varshney, R.ORCID: 0000-0002-4562-9131, Srikanth, S. and Jadhav, D. (2012) Differences between Cajanus cajan (L.) Millspaugh and C. cajanifolius (Haines) van der Maesen, the progenitor species of pigeonpea. Genetic Resources and Crop Evolution, 59 (3). pp. 411-417.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, W., Li, Y., Bharti, A.K., Saxena, R.K., Schlueter, J.A., Donoghue, M.T.A., Azam, S., Fan, G., Whaley, A.M., Farmer, A.D., Sheridan, J., Iwata, A., Tuteja, R., Penmetsa, R.V., Wu, W., Upadhyaya, H.D., Yang, S.P., Shah, T., Saxena, K.B., Michael, T., McCombie, W.R., Yang, B., Zhang, G., Yang, H., Wang, J., Spillane, C., Cook, D.R., May, G.D., Xu, X. and Jackson, S. (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 . pp. 83-89.

Aggarwal, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thangaraj, K. (2012) Editorial: Biological diversity or biodiversity – the web of life. Journal of Biosciences and Medicines, 37 (5). pp. 807-810.

Saxena, K.B., Saxena, R.K., Kumar, R.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Evidence of a unique inter-allelic epistatic interaction for seed coat color in pigeonpea [Cajanus cajan (L.) Millspaugh]. Euphytica, 186 (3). pp. 813-816.

Shiu, S-H, Kassa, M.T., Penmetsa, R.V., Carrasquilla-Garcia, N., Sarma, B.K., Datta, S., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, von Wettberg, E.J.B. and Cook, D.R. (2012) Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives. PLoS ONE, 7 (6). Art. e39563.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Paulo, M.J., Grando, S., van Eeuwijk, F.A., Keizer, L.C.P., Guo, P., Ceccarelli, S., Kilian, A., Baum, M. and Graner, A. (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 . pp. 171-180.

Saxena, K.B., Kumar, R.V., Saxena, R.K., Sharma, M., Srivastava, R.K., Sultana, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vales, M.I. and Pande, S. (2012) Identification of dominant and recessive genes for resistance to Fusarium wilt in pigeonpea and their implication in breeding hybrids. Euphytica, 188 (2). pp. 221-227.

Gaur, P.M., Jukanti, A.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Impact of genomic technologies on chickpea breeding strategies. Agronomy, 2 (3). pp. 199-221.

Mir, R.R., Zaman-Allah, M., Sreenivasulu, N., Trethowan, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. Theoretical and Applied Genetics, 125 (4). pp. 625-645.

Saxena, R.K., Varma Penmetsa, R., Upadhyaya, H.D., Kumar, A., Carrasquilla-Garcia, N., Schlueter, J.A., Farmer, A., Whaley, A.M., Sarma, B.K., May, G.D., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Large-Scale development of Cost-Effective Single-Nucleotide polymorphism marker assays for genetic mapping in Pigeonpea and comparative mapping in legumes. DNA Research, 19 (6). pp. 449-461.

Hiremath, P.J., Kumar, A., Penmetsa, R.V., Farmer, A., Schlueter, J.A., Chamarthi, S.K., Whaley, A.M., Carrasquilla‐Garcia, N., Gaur, P.M., Upadhyaya, H.D., Kavi Kishor, P.B., Shah, T.M., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Large‐scale development of cost‐effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal, 10 (6). pp. 716-732.

Sharma, M., Ghosh, R., Krishnan, R.R., Nagamangala, U.N., Chamarthi, S.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pande, S. (2012) Molecular and morphological diversity in Rhizoctonia bataticola isolates causing dry root rot of chickpea (Cicer arietinum L.) in India. African Journal of Biotechnology, 11 (37). pp. 8949-8959.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and May, G.D. (2012) Next-generation sequencing technologies: opportunities and obligations in plant genomics. Briefings in Functional Genomics, 11 (1). pp. 1-2.

Upadhyaya, H.D., Kashiwagi, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Saxena, K.B., Krishnamurthy, L., Gowda, C.L.L., Pundir, R.P.S., Chaturvedi, S.K., Basu, P.S. and Singh, I.P. (2012) Phenotyping chickpeas and pigeonpeas for adaptation to drought. Frontiers in Physiology, 3 . Art. 00179.

Gautami, B., Pandey, M.K., Vadez, V., Nigam, S.N., Ratnakumar, P., Krishnamurthy, L., Radhakrishnan, T., Gowda, M.V.C., Narasu, M.L., Hoisington, D.A., Knapp, S.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772.

Sujay, V., Gowda, M.V.C., Pandey, M.K., Bhat, R.S., Khedikar, Y.P., Nadaf, H.L., Gautami, B., Sarvamangala, C., Lingaraju, S., Radhakrishnan, T., Knapp, S.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Technological Innovations in Major World Oil Crops, Volume I: Breeding. Edited by S. K. Gupta. Heidelberg, Germany: Springer (2011), pp. 405, £153.00. ISBN 978-1-4614-0355-5. Experimental Agriculture, 48 (3). p. 470.

Gangola, M., Khedikar, Y., Gaur, P., Båga, M., Varshney, R.ORCID: 0000-0002-4562-9131 and Chibbar, R. (2012) Variation in important seed constituents among various chickpea genotypes. Quality Assurance and Safety of Crops & Foods, 4 (3). p. 139.

Mir, R.R., Saxena, R.K., Saxena, K., Upadhyaya, H.D., Kilian, A., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanusspp.). Plant Breeding, 132 (5). pp. 472-478.

Kudapa, H., Bharti, A.K., Cannon, S.B., Farmer, A.D., Mulaosmanovic, B., Kramer, R., Bohra, A., Weeks, N.T., Crow, J.A., Tuteja, R., Shah, T., Dutta, S., Gupta, D.K., Singh, A., Gaikwad, K., Sharma, T.R., May, G.D., Singh, N.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation sequencing platforms. Molecular Plant, 5 (5). pp. 1020-1028.

Gautami, B., Foncéka, D., Pandey, M.K., Moretzsohn, M.C., Sujay, V., Qin, H., Hong, Y., Faye, I., Chen, X., Bhanuprakash, A., Shah, T.M., Gowda, M.V.C., Nigam, S.N., Liang, X., Hoisington, D.A., Guo, B., Bertioli, D.J., Rami, J-F and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for Tetraploid Groundnut (Arachis hypogaea L.). PLoS ONE, 7 (7). Art. e41213.

Bohra, A., Saxena, R.K., Gnanesh, B.N., Saxena, K., Byregowda, M., Rathore, A., Kavikishor, P.B., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. Theoretical and Applied Genetics, 125 (6). pp. 1325-1338.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bansal, K.C., Aggarwal, P.K., Datta, S.K. and Craufurd, P.Q. (2011) Agricultural biotechnology for crop improvement in a variable climate: Hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Bohra, A., Dubey, A., Saxena, R.K., Penmetsa, R.V., Poornima, K.N., Kumar, N., Farmer, A.D., Srivani, G., Upadhyaya, H.D., Gothalwal, R., Ramesh, S., Singh, D., Saxena, K., Kishor, P.B.K., Singh, N.K., Town, C.D., May, G.D., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (1). Art. 56.

Sefera, T., Abebie, B., Gaur, P.M., Assefa, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187.

Gowda, M.V.C., Bhat, R.S., Sujay, V., Kusuma, P., Varshakumari, ., Bhat, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.

Deokar, A.A., Kondawar, V., Jain, P.K., Karuppayil, S.M., Raju, N.L., Vadez, V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Srinivasan, R. (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (1). Art. 70.

Krishnamurthy, L., Turner, N.C., Gaur, P.M., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131, Siddique, K.H.M. and Vadez, V. (2011) Consistent variation across soil types in salinity resistance of a diverse range of chickpea (Cicer arietinum L.) genotypes. Journal of Agronomy and Crop Science, 197 (3). pp. 214-227.

Dubey, A., Farmer, A., Schlueter, J., Cannon, S.B., Abernathy, B., Tuteja, R., Woodward, J., Shah, T., Mulasmanovic, B., Kudapa, H., Raju, N.L., Gothalwal, R., Pande, S., Xiao, Y., Town, C.D., Singh, N.K., May, G.D., Jackson, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164.

Gujaria, N., Kumar, A., Dauthal, P., Dubey, A., Hiremath, P., Bhanuprakash, A., Farmer, A., Bhide, M., Shah, T., Gaur, P.M., Upadhyaya, H.D., Bhatia, S., Cook, D.R., May, G.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 122 (8). pp. 1577-1589.

Dutta, S., Kumawat, G., Singh, B.P., Gupta, D.K., Singh, S., Dogra, V., Gaikwad, K., Sharma, T.R., Raje, R.S., Bandhopadhya, T.K., Datta, S., Singh, M.N., Bashasab, F., Kulwal, P., Wanjari, K.B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Cook, D.R. and Singh, N.K. (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). Art. 17.

Gnanesh, B.N., Bohra, A., Sharma, M., Byregowda, M., Pande, S., Wesley, V., Saxena, R.K., Saxena, K.B., Kavi Kishor, P.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123 (2). pp. 53-61.

Saxena, K.B., Sultana, R., Saxena, R.K., Kumar, R.V., Sandhu, J.S., Rathore, A., Kishor, P.B.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Genetics of fertility restoration in A4 -Based, diverse maturing hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51 (2). pp. 574-578.

Neumann, K., Kobiljski, B., Denčić, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Börner, A. (2011) Genome-wide association mapping: A case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27 (1). pp. 37-58.

Upadhyaya, H.D., Thudi, M., Dronavalli, N., Gujaria, N., Singh, S., Sharma, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources, 9 (1). pp. 45-58.

Tuberosa, R., Graner, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Genomics of plant genetic resources: An introduction. Plant Genetic Resources, 9 (2). pp. 151-154.

Pandey, M.K., Gautami, B., Jayakumar, T., Sriswathi, M., Upadhyaya, H.D., Gowda, M.V.C., Radhakrishnan, T., Bertioli, D.J., Knapp, S.J., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147.

Sharma, R., Thakur, R.P., Senthilvel, S., Nayak, S., Reddy, S.V., Rao, V.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Identification and characterization of toxigenic fusaria associated with sorghum grain mold complex in India. Mycopathologia, 171 (3). pp. 223-230.

Sarvamangala, C., Gowda, M.V.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Ravi, K., Vadez, V., Isobe, S., Mir, R.R., Guo, Y., Nigam, S.N., Gowda, M.V.C., Radhakrishnan, T., Bertioli, D.J., Knapp, S.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132.

Krishnamurthy, L., Gaur, P.M., Basu, P.S., Chaturvedi, S.K., Tripathi, S., Vadez, V., Rathore, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2011) Large genetic variation for heat tolerance in the reference collection of chickpea ( Cicer arietinum L.) germplasm. Plant Genetic Resources, 9 (1). pp. 59-69.

Hiremath, P.J., Farmer, A., Cannon, S.B., Woodward, J., Kudapa, H., Tuteja, R., Kumar, A., Bhanuprakash, A., Mulaosmanovic, B., Gujaria, N., Krishnamurthy, L., Gaur, P.M., Kavikishor, P.B., Shah, T., Srinivasan, R., Lohse, M., Xiao, Y., Town, C.D., Cook, D.R., May, G.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Large‐scale transcriptome analysis in chickpea ( Cicer arietinum L.), an orphan legume crop of the semi‐arid tropics of Asia and Africa. Plant Biotechnology Journal, 9 (8). pp. 922-931.

Anuradha, C., Gaur, P.M., Pande, S., Gali, K.K., Ganesh, M., Kumar, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Mapping QTL for resistance to botrytis grey mould in chickpea. Euphytica, 182 (1). pp. 1-9.

Hansson, B., Thudi, M., Bohra, A., Nayak, S.N., Varghese, N., Shah, T.M., Penmetsa, R.V., Thirunavukkarasu, N., Gudipati, S., Gaur, P.M., Kulwal, P.L., Upadhyaya, H.D., Kavikishor, P.B., Winter, P., Kahl, G., Town, C.D., Kilian, A., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Novel SSR markers from BAC-End Sequences, DArT Arrays and a comprehensive genetic map with 1,291 marker loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). Art. e27275.

Upadhyaya, H.D., Reddy, K.N., Sharma, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Bhattacharjee, R., Singh, S. and Gowda, C.L.L. (2011) Pigeonpea composite collection and identification of germplasm for use in crop improvement programmes. Plant Genetic Resources, 9 (1). pp. 97-108.

Mallikarjuna, N., Senapathy, S., Jadhav, D.R., Saxena, K., Sharma, H.C., Upadhyaya, H.D., Rathore, A. and Varshney, R.ORCID: 0000-0002-4562-9131 (2011) Progress in the utilization of Cajanus platycarpus(Benth.) Maesen in pigeonpea improvement. Plant Breeding, 130 (5). pp. 507-514.

Saxena, R.K., Cui, X., Thakur, V., Walter, B., Close, T.J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.

Bhardwaj, R., Sandhu, J.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Livinder, K. and Yogesh, V. (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes . pp. 91-95.

Yang, S.Y., Saxena, R.K., Kulwal, P.L., Ash, G.J., Dubey, A., Harper, J.D.I., Upadhyaya, H.D., Gothalwal, R., Kilian, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Glaszmann, J.C., Kilian, B., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173.

Thudi, M., Manthena, R., Wani, S.P., Tatikonda, L., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Analysis of genetic diversity in Pongamia [Pongamia pinnata (L) Pierrre] using AFLP markers. Journal of Plant Biochemistry and Biotechnology, 19 (2). pp. 209-216.

Saxena, R.K., Saxena, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26 (2). pp. 371-380.

Thakur, Vivek and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Challenges and strategies for Next Generation Sequencing (NGS) Data Analysis. Journal of Computer Science & Systems Biology, 3 (2). pp. 40-42.

Sharma, R., Rao, V. P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Prasanth, V.P., Kannan, S. and Thakur, R.P. (2010) Characterisation of pathogenic and molecular diversity in Sclerospora graminicola, the causal agent of pearl millet downy mildew. Archives Of Phytopathology And Plant Protection, 43 (6). pp. 538-551.

Witzel, K., Weidner, A., Surabhi, G-K, Varshney, R.K.ORCID: 0000-0002-4562-9131, Kunze, G., Buck-Sorlin, G.H., Börner, A. and Mock, H-P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell & Environment, 33 (2). pp. 211-222.

Zeid, M., Yu, J.K., Goldowitz, I., Denton, M.E., Costich, D.E., Jayasuriya, C.T., Saha, M., Elshire, R., Benscher, D., Breseghello, F., Munkvold, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Belay, G. and Sorrells, M.E. (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118 (1). pp. 28-35.

Salem, K.F.M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Röder, M.S. and Börner, A. (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57 (4). pp. 515-521.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Baum, M., Guo, P., Grando, S., Ceccarelli, S. and Graner, A. (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26 (2). pp. 229-242.

Cook, D.R and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology, 13 (2). pp. 115-118.

Koppolu, R., Upadhyaya, H.D., Dwivedi, S.L., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Genetic relationships among seven sections of genus Arachis studied by using SSR markers. BMC Plant Biology, 10 (1). Art. 15.

Bhardwaj, R., Sandhu, J.S., Kaur, L., Gupta, S.K., Gaur, P.M. and Varshney, R.ORCID: 0000-0002-4562-9131 (2010) Genetics of ascochyta blight resistance in chickpea. Euphytica, 171 (3). pp. 337-343.

Bohra, A., Mallikarjuna, N., Saxena, K., Upadhyaya, H.D., Vales, M.I. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Harnessing the potential of crop wild relatives through genomics tools for pigeonpea improvement. Journal of Plant Biology, 37 (1). pp. 83-98.

Nayak, S.N., Zhu, H., Varghese, N., Datta, S., Choi, H-K, Horres, R., Jüngling, R., Singh, J., Kavi Kishore, P.B., Sivaramakrishnan, S., Hoisington, D.A., Kahl, G., Winter, P., Cook, D.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Saxena, K.B., Sultana, R., Mallikarjuna, N., Saxena, R.K., Kumar, R.V., Sawargaonkar, S.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Male-sterility systems in pigeonpea and their role in enhancing yield. Plant Breeding, 129 (2). pp. 125-134.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Glaszmann, J-C, Leung, H. and Ribaut, J-M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460.

Saxena, R.K., Prathima, C., Saxena, K.B., Hoisington, D.A., Singh, N.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanusspp.). Plant Breeding, 129 (2). pp. 142-148.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Penmetsa, R.V., Dutta, S., Kulwal, P.L., Saxena, R.K., Datta, S., Sharma, T.R., Rosen, B., Carrasquilla-Garcia, N., Farmer, A.D., Dubey, A., Saxena, K.B., Gao, J., Fakrudin, B., Singh, M.N., Singh, B.P., Wanjari, K.B., Yuan, M., Srivastava, R.K., Kilian, A., Upadhyaya, H.D., Mallikarjuna, N., Town, C.D., Bruening, G.E., He, G., May, G.D., McCombie, R., Jackson, S.A., Singh, N.K. and Cook, D.R. (2010) Pigeonpea genomics initiative (PGI): An international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408.

Khedikar, Y.P., Gowda, M.V.C., Sarvamangala, C., Patgar, K.V., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Gupta, P.K., Balyan, H.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Quantitative genetics and plant genomics: An overview. Molecular Breeding, 26 (2). pp. 133-134.

Flowers, T.J., Gaur, P.M., Gowda, C.L.L., Krishnamurthy, L., Samineni, S., Siddique, K.H.M., Turner, N.C., Vadez, V., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Colmer, T.D. (2010) Salt sensitivity in chickpea. Plant, Cell & Environment, 33 (4). pp. 490-509.

Saxena, R.K., Saxena, K.B., Kumar, R.V., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance toFusariumwilt and sterility mosaic disease. Plant Breeding, 129 (2). pp. 135-141.

Thudi, M., Senthilvel, S., Bottley, A., Tom Hash, C., Reddy, A.R., Feltus, A.F., Paterson, A.H., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260.

Raju, N.L., Gnanesh, B.N., Lekha, P., Jayashree, B., Pande, S., Hiremath, P.J., Byregowda, M., Singh, N.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajanL.). BMC Plant Biology, 10 (1). Art. 45.

Navakode, S., Weidner, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lohwasser, U., Scholz, U., Röder, M.S. and Börner, A. (2010) A genetic analysis of aluminium tolerance in cereals. Agriculturae Conspectus Scientificus, 75 (4). pp. 191-196.

Tatikonda, L., Wani, S.P., Kannan, S., Beerelli, N., Sreedevi, T.K., Hoisington, D.A., Devi, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2009) AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. Plant Science, 176 (4). pp. 505-513.

Varshney, R.ORCID: 0000-0002-4562-9131, Pande, S., Kannan, S., Mahendar, T., Sharma, M., Gaur, P. and Hoisington, D. (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress, 8 (2). pp. 87-97.

Varshney, R.ORCID: 0000-0002-4562-9131 (2009) Book Review: Handbook of New Technologies for Genetic Improvement of Legumes. Edited by P. B. Kirti. Fl Boca Raton, USA: CRC Press/Taylor and Francis Group (2008), pp. 481, US$169.95. ISBN 978-1-56022-952-0. Experimental Agriculture, 45 (3). pp. 374-375.

Close, T.J., Bhat, P.R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J.T., Wanamaker, S., Bozdag, S., Roose, M.L., Moscou, M.J., Chao, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Szűcs, P., Sato, K., Hayes, P.M., Matthews, D.E., Kleinhofs, A., Muehlbauer, G.J., DeYoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A. and Waugh, R. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics, 10 (1). Art. 582.

Guo, P., Baum, M., Grando, S., Ceccarelli, S., Bai, G., Li, R., Von Korff, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A. and Valkoun, J. (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Sharma, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rao, J.N. and Kannan, S. (2009) Genetic diversity in Indian isolates of Fusarium oxysporum f. sp. ciceris, chickpea wilt pathogen. African Journal of Biotechnology, 8 (6). pp. 1016-1023.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mahendar, T., Aruna, R., Nigam, S.N., Neelima, K., Vadez, V. and Hoisington, D.A. (2009) High level of natural variation in a groundnut (Arachis hypogaeaL.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.

Leal-Bertioli, S.C.M., José, A., Alves-Freitas, D.M.T., Moretzsohn, M.C., Guimarães, P.M., Nielen, S., Vidigal, B.S., Pereira, R.W., Pike, J., Fávero, A.P., Parniske, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bertioli, D.J. (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (1). Art. 112.

Nayak, S.N., Balaji, J., Upadhyaya, H.D., Hash, C.T., Kishor, P.B.K., Chattopadhyay, D., Rodriquez, L.M., Blair, M.W., Baum, M., McNally, K., This, D., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Hoisington, D.A., Nayak, S.N. and Graner, A. (2009) Molecular Plant Breeding: Methodology and Achievements. Methods in Molecular Biology, 513 . pp. 283-304.

Gulati, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Virdi, J.S. (2009) Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocoliticabiovar 1A. Journal of Applied Microbiology, 107 (3). pp. 875-884.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Nayak, S.N., May, G.D. and Jackson, S.A. (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Dubey, A. (2009) Novel genomic tools and modern genetic and breeding approaches for crop improvement. Journal of Plant Biochemistry and Biotechnology, 18 (2). pp. 127-138.

Gautami, B., Koppolu, R., Mangamoori, L.N., Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Close, T.J., Singh, N.K., Hoisington, D.A. and Cook, D.R. (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210.

Jayashree, B., Bhanuprakash, A., Jami, A., Reddy, P.S., Nayak, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2 (1). Art. 92.

Navakode, S., Weidner, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lohwasser, U., Scholz, U. and Börner, A. (2009) A QTL analysis of aluminium tolerance in Barley, using Gene-Based markers. Cereal Research Communications, 37 (4). pp. 531-540.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Hiremath, P.J., Lekha, P., Kashiwagi, J., Balaji, J., Deokar, A.A., Vadez, V., Xiao, Y., Srinivasan, R., Gaur, P.M., Siddique, K.H.M., Town, C.D. and Hoisington, D.A. (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (1). Art. 523.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bertioli, D.J., Moretzsohn, M.C., Vadez, V., Krishnamurthy, L., Aruna, R., Nigam, S.N., Moss, B.J., Seetha, K., Ravi, K., He, G., Knapp, S.J. and Hoisington, D.A. (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Singh, R., Sharma, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sharma, S.K. and Singh, N.K. (2008) Chickpea improvement: Role of wild species and genetic markers. Biotechnology and Genetic Engineering Reviews, 25 (1). pp. 267-314.

Kota, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Prasad, M., Zhang, H., Stein, N. and Graner, A. (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233.

Chabane, K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A. and Valkoun, J. (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881.

Upadhyaya, H.D., Dwivedi, S.L., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Udupa, S.M., Gowda, C.L.L., Hoisington, D. and Singh, S. (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8 (1). Art. 106.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thiel, T., Sretenovic-Rajicic, T., Baum, M., Valkoun, J., Guo, P., Grando, S., Ceccarelli, S. and Graner, A. (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13.

Mace, E.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mahalakshmi, V., Seetha, K., Gafoor, A., Leeladevi, Y. and Crouch, J.H. (2008) In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science, 174 (1). pp. 51-60.

Cuc, L.M., Mace, E.S., Crouch, J.H., Quang, V.D., Long, T.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (1). Art. 55.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Coyne, C.J., Swamy, P. and Hoisington, D.A. (2008) Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics, 39 . pp. 32-33.

Sharma, H.C., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M. and Gowda, C.L.L. (2008) Potential for using morphological, biochemical, and molecular markers for resistance to insect pests in grain legumes. Journal of Food Legumes, 21 (4). pp. 211-217.

Guo, P., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A., Grando, S. and Ceccarelli, S. (2008) QTLs for chlorophyll and chlorophyll fluorescence parameters in barley under post-flowering drought. Euphytica, 163 (2). pp. 203-214.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Salem, K.F.M., Baum, M., Röder, M.S., Graner, A. and Börner, A. (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources: Characterization and Utilization, 6 (2). pp. 167-174.

Castillo, A., Budak, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Dorado, G., Graner, A. and Hernandez, P. (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (1). Art. 97.

Stein, N., Prasad, M., Scholz, U., Thiel, T., Zhang, H., Wolf, M., Kota, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Perovic, D., Grosse, I. and Graner, A. (2007) A 1,000-loci transcript map of the barley genome: New anchoring points for integrative grass genomics. Theoretical and Applied Genetics, 114 (5). pp. 823-839.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Langridge, P. and Graner, A. (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. Advances in Genetics, 58 . pp. 121-155.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2007) Chickpea genomics consortium on drought tolerance. Journal of SAT Agricultural Research, 3 (1). p. 1.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Chabane, K., Hendre, P.S., Aggarwal, R.K. and Graner, A. (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Nayak, S.N., Jayashree, B., Eshwar, K. and Hoisington, D.A. (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3.

Marcel, T.C., Aghnoum, R., Durand, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Niks, R.E. (2007) Dissection of the Barley 2L1.0 region carrying the ‘Laevigatum’ quantitative resistance gene to leaf rust using Near-Isogenic lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615.

Hoisington, D.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2007) Diversity Arrays Technology (DArT) Low Cost, Generic Molecular Markers for Breeding and Research. Biotech News, 2 (1). pp. 6-8.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Horres, R., Molina, C.M., Nayak, S.N., Jungmann, R., Swamy, P., Winter, P., Jayashree, B., Kahl, G. and Hoisington, D.A. (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm. Journal of SAT Agricultural Research, 5 . pp. 1-3.

Amrutha, R.N., Sekhar, P.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kishor, P.B.K. (2007) Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.). Plant Science, 172 (4). pp. 708-721.

Aggarwal, R.K., Hendre, P.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Bhat, P.R., Krishnakumar, V. and Singh, L. (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. Theoretical and Applied Genetics, 114 (2). pp. 359-372.

Vadez, V., Krishnamurthy, L., Serraj, R., Gaur, P.M., Upadhyaya, H.D., Hoisington, D.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Turner, N.C. and Siddique, K.H.M. (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129.

Weidner, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Buck-Sorlin, G.H., Stein, N., Graner, A. and Börner, A. (2007) Salztoleranz bei Gerste–Assoziationskartierung kontra klassische QTL-Kartierung. Pflanzenzücht, 72 . pp. 125-130.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Beier, U., Khlestkina, E.K., Kota, R., Korzun, V., Graner, A. and Börner, A. (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. Theoretical and Applied Genetics, 114 (6). pp. 1105-1116.

Guo, P., Baum, M., Li, R-H, Grando, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A. and Ceccarelli, J.V. (2007) Transcriptional analysis of barley genes in response to drought stress at the reproductive growth stage using affymetrix Barley 1 genechip. Journal of Guangzhou University, 6 (5). pp. 32-36.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Marcel, T.C., Ramsay, L., Russell, J., Röder, M.S., Stein, N., Waugh, R., Langridge, P., Niks, R.E. and Graner, A. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics, 114 (6). pp. 1091-1103.

Marcel, T.C., Varshney, R.K.ORCID: 0000-0002-4562-9131, Barbieri, M., Jafary, H., de Kock, M.J.D., Graner, A. and Niks, R.E. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics, 114 (3). pp. 487-500.

Jayashree, B., Hanspal, M.S., Srinivasan, R., Vigneshwaran, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Spurthi, N., Eshwar, K., Ramesh, N., Chandra, S. and Hoisington, D.A. (2007) An integrated pipeline of open source software adapted for Multi-CPU Architectures: Use in the Large-Scale identification of single nucleotide polymorphisms. Comparative and Functional Genomics, 2007 . pp. 1-7.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Hoisington, D.A. and Tyagi, A.K. (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Grosse, I., Hähnel, U., Siefken, R., Prasad, M., Stein, N., Langridge, P., Altschmied, L. and Graner, A. (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theoretical and Applied Genetics, 113 (2). pp. 239-250.

Jayashree, B., Reddy, P.T., Leeladevi, Y., Crouch, J.H., Mahalakshmi, V., Buhariwalla, H.K., Eshwar, K.E., Mace, E., Folksterma, R., Senthilvel, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Seetha, K., Rajalakshmi, R., Prasanth, V.P., Chandra, S., Swarupa, L., SriKalyani, P. and Hoisington, D.A. (2006) Laboratory Information Management Software for genotyping workflows: Applications in high throughput crop genotyping. BMC Bioinformatics, 7 (1). Art. 383.

Willsmore, K.L., Eckermann, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A., Langridge, P., Pallotta, M., Cheong, J. and Williams, Kevin J. (2006) New eSSR and gSSR markers added to Australian barley maps. Australian Journal of Agricultural Research, 57 (9). pp. 953-959.

Rostoks, N., Ramsay, L., MacKenzie, K., Cardle, L., Bhat, P.R., Roose, M.L., Svensson, J.T., Stein, N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Marshall, D.F., Graner, A., Close, T.J. and Waugh, R. (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661.

Khlestkina, E.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Röder, M.S., Graner, A. and Börner, A. (2006) A comparative assessment of genetic diversity in cultivated barley collected in different decades of the last century in Austria, Albania and India by using genomic and genic simple sequence repeat (SSR) markers. Plant Genetic Resources, 4 (2). pp. 125-133.

McCouch, S., Baute, G.J., Bradeen, J., Bramel, P., Bretting, P.K., Buckler, E., Burke, J.M., Charest, D., Cloutier, S., Cole, G., Dempewolf, H., Dingkuhn, M., Feuillet, C., Gepts, P., Grattapaglia, D., Guarino, L., Jackson, S., Knapp, S., Langridge, P., Lawton-Rauh, A., Lijua, Q., Lusty, C., Michael, T., Myles, S., Naito, K., Nelson, R.L., Pontarollo, R., Richards, C.M., Rieseberg, L., Ross-Ibarra, J., Rounsley, S., Hamilton, R.S., Schurr, U., Stein, N., Tomooka, N., van der Knaap, E., van Tassel, D., Toll, J., Valls, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Ward, J., Waugh, R., Wenzl, P. and Zamir, D. Feeding the future. Nature, 499 . pp. 23-24.

Non-refereed Article

Singh, A., Kumar, M., Raina, S., Ratnaparkhe, M., Rane, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kachroo, A. (2020) Modulation of GmFAD3 expression alters responses to abiotic stress in soybean. Authorea .

Zeng, Q., Cao, W., Xing, L., Qin, G., Wu, J., Nagle, M.F., Xiong, Q., Chen, J., Yang, L., Bajaj, P., Chitikineni, A., Zhou, Y., Yu, Y., Xu, J., Nie, X., Huang, L., Liu, S., Šafář, J., Šimková, H., Song, W., Guo, B., Chen, S., Doležel, J., Hao, Z., Cheng, Q., Liang, J., Tang, J., Cao, A., Wang, Q., Lu, X., Yang, S., Ma, H., Liu, J., Wang, X., Zhang, H., Wang, Z., Ji, W., Wang, C., Yuan, F., Shi, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kang, Z., Han, D. and Xu, H. (2020) A novel high-accuracy genome assembly method utilizing a high-throughput workflow. bioRxiv .

Cobos, C.J., Tengey, T.K., Balasubramanian, V.K., Williams, L.D., Sudini, H.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Falalou, H., Burow, M.D. and Mendu, V. (2018) Employing Peanut Seed Coat Cell Wall Mediated Resistance Against Aspergillus flavus Infection and Aflatoxin Contamination. Preprints .

Koul, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Young researchers need to focus more on agriculture. BioSpectrum, 13 (11-12). pp. 78-79.

Conference Paper

Roorkiwal, M., Chellapilla, B., Santantonio, N., Jarquin, D., Samineni, S., Jones, E., Robbins, K., Singh, N.P., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomic prediction to accelerate the rate of genetic gain in Chickpea for providing nutritional food security. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA

Sharma, S., Kumar, C.V.S., Prasanthi, L., Rao, P.J., Thi, P., Win, M.M., Muniswamy, S., Panwar, R.K., Arora, A., Singh, S., Rani, U., Thudi, M., Sharma, M., Nimje, C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Pre-breeding for genetic enhancement of grain legumes. In: ICPulse 2020: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, 10 - 12 February 2020, Central Institute of Agricultural Engineering, Bhopal

Smith, M., Kholova, J., Roorkiwal, M., Barmukh, R., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W004: Dissection of physiological and molecular mechanisms of drought tolerance in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Roorkiwal, M., Santantonio, N., Jarquin, D., Chellapilla, B., Singh, M., Gaur, P.M., Samineni, S., Howard, R., Gao, S.K., Jones, E., Crossa, J., Robbins, K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W264: Achieving higher genetic gain by enhancing precision through genomic selection breeding in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Zhuang, W., Chen, H., Meng, Y., Wang, J., Pandey, M.K., Zhang, C., Yang, Q., Cai, T., Deng, Y., Paterson, A.H., Wang, X., Ming, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W527: The genome of Arachis hypogaea provide insight into the evolution and domestication. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Khan, A.W., Garg, V., Roorkiwal, M., Bayer, P.E., Thudi, M., Chitikineni, A., Upadhyaya, H.D., Nguyen, H.T., Edwards, D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W529: Walking on the wild side using pangenomics for accelerated crop improvement in chickpea. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Chitikineni, A., Wang, H., Agarwal, G., Khan, A.W., Pandey, M.K., Ozias-Akins, P., Holbrook, C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2019) W565: Application of TILLING and BSA-Seq approach to map prominent main stem and leaf spot resistance in groundnut. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Jones, E., Robbins, K., Gao, S.Y., Nti-Addae, Y.A., Dreher, K.A., Olsen, M., Dreisigacker, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Rathore, A., Cobb, J.N., Maulen, R. and McCouch, S. (2019) W613: The genomic open-source breeding informatics initiative: Developing a global community of knowledge surrounding the use of markers in genomic selection. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Ng, E.H., Bohar, R., Kigoni, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Olsen, M., Stolt, P. and Vanroggen, P. (2019) W617: Accelerating genetic gains in crop breeding in Sub-Saharan Africa and Southern Asia by improving access and affordability to high throughput genotyping. In: Plant & Animal Genome Conference XXVII, 12 - 16 January 2019, San Diego, CA

Pandey, M.K., Sudini, H.K., Pandey, A.K., Shasidhar, Y., Fountain, J., Manohar, S.S., Nayak, S.N., Soni, P., Kumar, R., Variath, M.T., Pandey, S., Janila, P., Bera, S.K., Liao, B., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W638: Understanding and modifying the nutritional and oil quality architecture to breed Nutrition-Rich and high oil quality peanuts. In: Plant and Animal Genome XXVII Conference, 12 - 16 January 2019, San Diego, CA

Barmukh, R., Roorkiwal, M., Thudi, M., Kholova, J., Gaur, P.M., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) W903: Unravelling the physiological basis of drought tolerance regulated By "QTL-Hotspot" region in chickpea (Cicer arietinum L.). In: Plant & Animal Genome Conference XXVIII, 12 - 16 January 2019, San Diego, CA

Robbins, K.R., Olsen, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Zhang, X., Beyene, Y., Bharadwaj, C., Gaur, P.M., Gowda, M., Makumbi, D., Vicente, F.S., Atanda, S.A., Dreher, K., Crossa, J., Gao, S., Rathore, A., Ulat, V., Quinn, M.G. and Jones, E. (2018) Implementation of genomic selection in maize and chickpea breeding programs in Africa and South Asia. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD

Ojiewo, C.O., Rubyogo, J.C., Akpo, E., Omoigui, L., Muricho, G. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Scaling-up legume seed production and delivery for enhanced productivity and livelihoods of smallholder farmers. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD

Varshney, R.K.ORCID: 0000-0002-4562-9131, Sajja, S., Thudi, M., Jayalakshmi, V., Vijayakumar, A. and Mannur, D.M. (2016) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: 3rd International Plant Breeding Conference (IPBC) 2016, 15 - 16 November 2016, Hotel Bangi-Putrajaya, Malaysia

Mannur, D.M., Yeri, S.B., Mahiboobsa, M., Shankergouda, I., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M. and Jayalakshmi, S.K. (2016) Introgress of foc 4 QTL locus to develop "Super Annigeri-1" chickpea variety resistant to fusarium wilt through MABC. In: VII International Scientific Agriculture Symposium (Agrosym 2016), 6 - 9 October 2016, Jahorina, Bosnia and Herzegovina

Sameer Kumar, C.V., Nagesh Kumar, M.V., Sudhakar, C., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Crop specific traits of Pigeonpea [Cajanus cajan (L.) Millspaugh) and their implications in seed production. In: 8th National Seed Congress, 27 - 29 October 2015, Hyderabad, India

Sajja, S., Samineni, S., Gadekar, M., Jayalakshmi, V., Vijay-akumar, A., Yasin, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia: Oil And Protein Crops Section Conference, 1 - 5 November 2015, WOW Kremlin Palace Hotel, Antalya, Turkey

Samineni, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sajja, S., Thudi, M., Jayalakshmi, V., Vijayakumar, A. and Mannur, D.M. (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia: Oil And Protein Crops Section Conference, 1 - 5 November 2015, WOW Kremlin Palace Hotel, Antalya, Turkey

Sameer Kumar, C.V., Singh, I.P., Patil, S.B., Mula, M.G., Kumar, R.V., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Recent advances in Pigeonpea [Cajanus cajan (L.) Millspaugh) Research. In: 2nd International Conference on Bio-Resource and Stress Management, 7 - 10 January 2015, Hyderabad, India

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) The 1000 Pulse Genome Sequencing Initiative: Connecting Genes to Traits. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Pattanashetti, S.K., Vetriventhan, M., Lalitha, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, S. (2014) Capturing variations for multiple stress and agronomic traits for improvement of grain legumes. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Upadhyaya, H.D., Dwivedi, S.L., Sharma, S., Singh, S., Lalitha, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Chickpea germplasm for use in crop improvement: Approaches and way forward. In: Harnessing Chickpea Value Chain for Nutrition Security and Commercialization of Smallholder Agriculture in Africa, 30 Jan - 1 Feb 2014, Debra Zeit, Ethiopia

Gaur, P.M., Samineni, S., Krishnamurthy, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Kumar, S., Ghanem, M.E., Beebe, S.E., Rao, I.M., Chaturvedi, S.K., Basu, P.S., Nayyar, H., Jayalakshmi, V. and Babbar, A. (2014) High temperature tolerance in grain legumes. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Pasupuleti, J., Pandey, M.K., Manohar, S.S., Sudini, H., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Identification of introgression lines with superior pod yield and improved rust resistance in peanut (Arachis hypogaea L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Sameer Kumar, C.V., Mula, M.G., Singh, P., Mula, R.P., Saxena, R.K., Ganga Rao, N.V.P.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea perspective in India. In: 1st Philippine Pigeonpea Congress, 16 - 18 December 2014, Mariano Marcos State University, Batac, Ilocos Norte, Philippines

Monyo, E.S., Ganga Rao, N.V.P.R., Ojiewo, C., Simtowe, F., Rubyogo, J.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2014) The Seed Constraint: New approaches for smallholder agriculture in eastern and southern Africa. In: Harnessing Chickpea Value Chain for Nutrition Security and Commercialization of Smallholder Agriculture in Africa, 30 Jan - 1 Feb 2014, Debra Zeit, Ethiopia

Saxena, R.K., Patel, K., Obarley, Y., Kumar, V., Kim, C., Singh, V., Shaun, A., Kuruvinashetti, M.S., Rhee, H., Kim, B., Zhang, W., Sameer Kumar, C.V., Karwa, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Whole genome re-sequencing based classification of heterotic pools for accelerating hybrid breeding in pigeonpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada

Neumann, K., Balint, A.F., Szira, F., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Börner, A. (2011) Genome-wide association mapping for early and late drought tolerance in a diverse barley collection. In: Climate change: challenges and opportunities in agriculture. AGRISAFE Final Conference, 21 - 23 March 2011, Budapest, Hungary

Oyier, M.O., Mulwa, R.M.S., Kimurto, P.K., Towett, B.K., Cheruiyot, E.K., Gang Rao, N.V.P.R., Silim, S.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2011) Marker assisted backcross breeding to enhance drought tolerance in Kenyan chickpea (Cicer arietinum L.) germplasm. In: 6th Egerton University International Conference: Research and Expo-Transformative Research for Sustainable Development, 21 - 23 September 2011, Njoro, Kenya

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Application of next generation sequencing and genotyping technologies to develop Large‐Scale genomic resources in SAT legume crops. In: National Symposium on Genomics and Crop Improvement: Relevance and Reservations, 25 - 27 February 2010, Acharya N G Ranga Agricultural University, Rajendranagar

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, M.V.C., Thankappan, R., Koppolu, R., Khedikar, Y.P., Senthilvel, S., Bhimana, G., Vadez, V., Nigam, S.N., Upadhyaya, H.D., Isobe, S., He, G., Bertioli, D.J., Knapp, S.J., Cook, D.R., Hoisington, D.A. and Butterfield, M. (2010) Developing genemic resources for facilitating molecular breeding in cultivated groundnut (Arachis hypogaea L.). In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA

Upadhyaya, H.D., Dwivedi, S.L., Baum, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Udupa, S.M., Gowda, C.L.L., Prasanth, V., Furman, B.J., Hoisington, D.A., Chandra, S. and Singh, S. (2008) Allelic richness and diversity in global composite collection and reference sets in chickpea (Cicer arietinum L.). In: 5th International Crop Science Congress & Exhibition, 13 - 18 April 2008, International Convention Center. Jeju, Korea

Varshney, R.ORCID: 0000-0002-4562-9131, Kearsey, M., Luo, Z. and Potokina, E. (2008) Towards whole genome as s ociation genetic s cans in barley. In: Meeting of the Eucarpia Cereal Section, 13 - 17 November 2006, Lleida, Spain

Varshney, R.ORCID: 0000-0002-4562-9131, Kearsey, M., Luo, Z., Potokina, E., Close, T.J., Waugh, R., Rostoks, N., Ramsay, L., Marshall, D., Thomas, B., Druka, A., Wannamaker, S., Svensson, J., Bhat, P., Graner, A. and Stein, N. (2008) Towards whole genome association genetic scans in barley. In: Meeting of the Eucarpia Cereal Section, 13 - 17 November 2006, Lleida, Spain

Gaur, P.M., Srivastava, R.K., Gowda, C.L.L., Pande, S., Sharma, H.C., Sharma, K.K., Vadez, V., Kashiwagi, J., Krishnamurthy, L., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hoisington, D.A. (2007) Breeding Chickpea for Improved Adaptation to the Semi-Arid Tropical Environments. In: 7th International Conference on Sustainable Agriculture, Food, Bio‐energy and Livelihood Security, 14 - 16 February 2007, Jabalpur, Madhya Pradesh. India

Vadez, V., Krishnamurthy, L., Gaur, P.M., Upadhyaya, H.D., Hoisington, D.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Turner, N.C. and Siddique, K.H.M. (2006) Tapping the large genetic variability for salinity tolerance in chickpea. In: 13th Australian Agronomy Conference, 10 - 14 September 2006, Perth, Western Australia

Weidner, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Buck-Sorlin, G., Lohwasser, U., Stein, N., Graner, A. and Börner, A. (2005) QTLs for salt tolerance in three different barley mapping populations 2006. In: 13th International EWAC Conference, 27 June - 1 July 2005, Prague, Czech Republic

Conference Item

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Genomics-Assisted Breeding. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Translational genomics for developing climate resilient and high yielding chickpeas. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA.

Gaur, P.M., Samineni, S., Hingane, A., Sharma, M., Jaba, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Saxena, R.K., Sharma, S.S., Bhatnagar, P.M. and Sharma, K.K. (2019) Breeding for resistance to diseases and insect pests in grain legumes. In: XIX International Plant Protection Congress, 10 - 14 November 2019, Hyderabad, Telangana, India.

Agarwal, C., Vandemark, G.J., Chen, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genome wide association studies and QTL mapping in chickpeas for resistance to Ascochyta Blight and Pythium Ultimum. In: 2019 ASA-CSSA-SSSA International Annual Meeting: Embracing the Digital Environment, 10 - 13 Vov. 2019, San Antonio, TX.

Sharma, S., Sharma, R., Singh, I., Jayalekha, A.K., Yadav, Y., Vadez, V., Gupta, S.K., Kholova, J., Singh Deora, V., Yadav, D., Gangashetty, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Improving biotic and abiotic stress tolerance of cultivated Pearl Millet (Pennisetum glaucum L.) through Introgression of alleles from wild species. In: 2019 ASA-CSSA-SSSA International Annual Meeting: Embracing the Digital Environment, 10 - 13 Vov. 2019, San Antonio, TX.

Bohar, R., Ng, H.W., Kigoni, M., Vanroggen, P., Stolt, P., Olsen, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Shared genotyping platform to achieve accelerated genetic gains in crop improvement in Sub-Saharan Africa and South Asia by enabling access to high throughput genotyping. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Liu, X. (2019) Translational genomics. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Translational genomics for improving dryland crops. In: 13th International Conference on Development of Drylands: Converting Dryland Areas from Grey into Green, 11 - 14 February 2019, Jodhpur, India.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) A high resolution gene expression atlas in Chickpea: Implications in crop improvement. In: Plant and Animal Genome (PAG ASIA) Conference 2019, 6 - 8 June 2019, Shenzhen, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) 4Gs in crop breeding for pulses improvement in developing countries. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Varshney, R.ORCID: 0000-0002-4562-9131 and Gupta, R. (2018) Advanced genomics and breeding technologies to accelerate genetic gains. In: Mini Symposium. Centre of Excellence in Genomics & Systems Biology (CEGSB), 20 Dec. 2018, ICRISAT, Hyderabad, India.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2018) CSSA: Translational Genomics. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Sharma, R., Singh, S., Nayak, S., Botapati, P., Khan, A. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. In: International Congress of Plant Pathology (ICPP), July 29 - August 03, 2018, Boston, MA.

Puppala, N., Mura, J.D., Pasupuleti, J., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genetic mapping of yield traits using ril population derived from Valencia-C X Jug-03 of peanut (Arachis hypogaea L.). In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Nguyen, H.T., Jones, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Genome data management, genome mapping, and Genomics-Assisted breeding oral. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Janila, P., Radhakrishnan, T., Murali, T.V., Bera, S.K., Dobariya, K.L., Nigam, S.N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Manohar, S.S., Manivannan, N. and Vasanthi, R.P. (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, 10 - 12 October 2018, Stellenbosch, South Africa.

Lee, S-H and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Legumes Genomics. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Appels, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Plenary Lecture: Philippa Borrill - "The Transcriptome of Polyploid Wheat". In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Fountain, J., Koh, J., Pandey, M., Zhuang, W., Chen, Z-Y, Kemerait, R., Chen, S., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. In: 11th International Congress of Plant Pathology (ICPP) 2018: Plant Health in A Global Economy, 29 July - 3 August 2018, Boston, MA.

Guo, B., Agarwal, G., Clevenger, J., Pandey, M., Wang, H., Sisidar, Y., Gangurde, S., Fountain, J., Choudhary, D., Culbreath, A., Liu, X., Bertioli, D., Jackson, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) The SNP-based high-density linkage maps and fine mapping of QTLs controlling disease resistance using whole-genome re-sequencing in peanut. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Jones, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Symposium - Genome Data Management and Integration for Improved Breeding. In: 2018 ASA and CSSA Meeting, 4 - 7 November 2018, Baltimore, MD.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Translational Genomics for Agriculture. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Saxena, R.K., Pazhamala, L.T., Sinha, P., Sameer Kumar, C.V., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W003: Changes in the pigeonpea genome under abiotic stress responses. In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W006: Genomic and genetic analysis in polyploid species a journey of genes from genome to fields in groundnut. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Kudapa, H., Garg, V., Chitikineni, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) W241: The RNA-Seq Based Gene Expression Atlas of a Major Food Legume Chickpea (Cicer arietinum L.). In: Plant & Animal Genome Conference XXVI, 13 - 17 January 2018, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) A journey of genes from genome to fields in groundnut. In: Plant and Animal Genome (PAG Asia) Conference 2018, 30 May - 1 June 2018, Seoul, Korea.

Jones, E., Gao, S., Nti-Addae, Y.A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Dreher, K., Kretzschmar, T., Olsen, M., McCouch, S.R. and Robbins, K.R. (2017) 127-7: The Genomic Open-Source Breeding Informatics Initiative (GOBII) - a Gates Foundation Initiative to Transform Breeding through the Use of Genomic Selection. In: 2017 Annual Meeting: Managing Global Resources for a Secure Future, 22 - 25 October 2017, Tampa, FL.

Chichaybelu, M., Eshete, M., Korbu, L., Mohammed, R., Girma, N., Bekele, D., Geleta, T., Fikre, A., Ganga Rao, N.V.P.R., Ojiewo, C.O., Monyo, E., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Desmae, H., Ntare, B., Motagi, B.N., Falalou, H., Upadhyaya, H.D., Oteng-Frimpong, R., Sako, D., Echekwu, C., Miningou, A., Monyo, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Fountain, J., Agarwal, G., Bajaj, P., Pandey, M., Kemerait, R. and Varshney, R.ORCID: 0000-0002-4562-9131 (2017) Aspergillus flavus functional genomics: Toward enhancing host resistance to aflatoxin contamination under drought using biotechnology. In: Annual Meeting. American Phytopathological Society (APS), 5 - 9 August 2017, San Antonio, TX.

Bharadwaj, C., Patil, B.S., Madan, P., Manu, B., Tapan, K., Neeraj, K., Philanim, S., Soren, K.R., Jain, P.K., Supriya, S., Nazish, N., Shruti, R., Sarvjeet, S., Tripathi, S., Hedge, V.S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Chauhan, S.K. (2017) Breeding chickpea for water limited environments: Selection indices and strategies. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Chen, H., Zhang, C., Cai, T.C., Deng, Y., Zhou, S.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W.J. (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Gaur, P.M., Samineni, S., Thudi, M., Sajja, S., Chaturvedi, S.K., Jayalakshmi, V., Babbar, A., Yasin, M., Mannur, D.M., Vijaykumar, A.G., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Dixit, G.P. (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Ruperao, P., Bayer, P., Chan, C.K.K., Hayashi, S., Roorkiwal, M., Chitikineni, A., Sutton, T., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Somanaboina, A.K., Narasu, L.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kishor, P.B.K. (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Fountain, J.C., Bajaj, P., Yang, L., Pandey, M.K., Kumar, V., Jayale, A.S., Chitikineni, A., Lee, R.D., Scully, B.T., Kemerait, R.C., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Guo, B. (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Chaturvedi, S.K., Singh, N.P., Gaur, P.M., Mishra, N., Alok, D., Sumit, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Thudi, M., Gaur, P.M., Krishnamurthy, L., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kale, S.M., Jaganathan, D., Roorkiwal, M., Thudi, M., Purushothaman, R., Praveenkumar, M., Krishnamurthy, L., Kavi Kishor, P.B., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Palavalasa, H.K., Narasu, L.N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kavi Kishor, P.B. (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Roorkiwal, M., Jarquin, D., Jain, A., Garg, V., Kale, S.M., Singh, M.K., Samineni, S., Gaur, P.M., Rathore, A., Chellapilla, B., Tripathi, S., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sinha, P., Saxena, R.K., Singh, V.K., Khan, A.W., Upadhyaya, H.D., Desai, A., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Haplotype for drought responsive genes in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Mishra, N., Monyo, E.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Harnessing the power of social media to reach the unreached: knowledge dissemination for greater impact of tropical legumes. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sivasakthi, K., Thudi, M., Tharanya, M., Kale, S.M., Kholova, J., Halime, M.H., Jaganathan, D., Baddam, R., Thirunalasundari, T., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Sameer Kumar, C.V., Hingane, A.J., Shruthi, H.B., Sharma, M., Sudhakar, C., Nagesh Kumar, M.V., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M. and Wani, S.P. (2017) Hybrid pigeonpea: Best bet for maximizing productivity in dry lands. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Singh, S.K., Kale, S.M., Saxena, R.K., Sinha, P., Parupalli, S., Suryanaraya, V., Obala, J., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification and validation of insertion–deletion polymorphisms in pigeonpeaa. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Yadav, P., Saxena, R.K., Kandalkar, V.S., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification of genes and genomic segments for cleistogamy in Pigeonpea(Cajanus cajan L.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kaoneka, S.R., Saxena, R.K., Singh, V.K., Sameer Kumar, C.V., Shimelis, H.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Nayak, S.N., Agarwal, G., Pandey, M.K., Sudini, H., Jayale, A.S., Purohit, S., Bajaj, P., Desai, A., Wan, L., Guo, B., Liao, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kosgei, A.J., Kimurto, P.K., Gaur, P.M., Yeboah, M.A., Offei, S.K., Danquah, E.Y., Muriuki, R.W., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Monyo, E.S., Desmae, H., Boukar, O., Mukankusi, C., Gaur, P.M., Okori, P., Motagi, B.N., Ajeigbe, H.A., Fatokun, C., Moukumbi, Y., Kamara, A., Omoigui, L., Arega, A., Mausch, K., Bodo, R., Beebe, S., Ojiewo, C., Rubyogo, J., Akpo, E. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Liao, B., Lei, Y., Jiang, H., Yan, L., Wan, L., Huang, L., Zhou, X., Luo, H., Chen, Y., Wang, H., Pandey, M.K., Sudini, H., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Management of aflatoxin contamination in groundnut by enhancing host-plant resistance. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kudapa, H., Agarwal, G., Chitikineni, A., Gaur, P.M., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Mining for heat stress responsive genes by RNA-Seq based comprehensive gene expression analyses in chickpea (Cicer arietinum L.). In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kumar, A.L.R., Thirumalaisamy, P.P., Narendrakumar, ., Lalwani, H.B., Nadaf, H.L., Nagaraju, P., Yenagi, B., Patil, S., Suryawanshi, J., Deshmukh, M.P., Kumbhar, C.T., Kathmale, D.K., Naik, K.S.S., Rajesh, P., Vemana, K., Premalatha, N., Sundaravadana, S., Variath, M.T., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Janila, P. (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Obala, J., Saxena, R.K., Singh, V.K., Kale, S.M., Garg, V., Kumar, V., Sameer Kumar, C.V., Tongoona, P., Sibiya, J., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Puppala, N., Xavier, A., Garg, V., Nayak, S.N., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Layland, N., Payton, P. and Holbrook, C. (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Pazhamala, L.T., Saxena, R.K., Purohit, S., Bajaj, P., Kumar, V., Garg, V., Srikanth, S., Hingane, A.J., Kulshreshtha, A., Krishnamurthy, L., Sameer Kumar, C.V., Verdier, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Kimurto, P., Oyier, M., Mulwa, R., Singok, S., Towett, B., Cheruiyot, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Mahender, T., Ganga Rao, N.P.V.R., Silim, S. and Siambi, M. (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Shruthi, H.B., Hingane, A.J., ReddiSekhar, M., Srivarsha, J., Bhosle, T.M., Saxena, R.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P.M., Wani, S.P. and Sameer Kumar, C.V. (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Saxena, R.K., Singh, V., Rathore, A., Yu, O., Kim, C., Kumar, V., Patel, K., Khan, A.W., Tyagi, K., An, S., Seon, D., Kuruvinashetti, M.S., Kim, J., BellBull, K., Zhang, W., Sameer Kumar, C.V., Muniswamy, S., Saxena, K.B., Reif, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Puppala, N., Mura, J.D., Pasupuleti, J., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Vadez, V. (2017) Variation in transpiration efficiency and its related traits in Valencia mapping population ICGV 7243 X Valencia-C. In: 2017 Annual Meeting: Managing Global Resources for a Secure Future, 22 - 25 October 2017, Tampa, FL.

Pandey, M.K., Agarwal, G., Kale, S.M., Clevenger, J., Nayak, S.N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H.D., Vishwakarma, M.K., Leal-Bertioli, S., Liang, X., Bertioli, D.J., Guo, B., Jackson, S.A., Ozias-Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, 21 - 25 February 2017, Hyderabad, India.

Dillon, N., Innes, D., Ming, Y., Fang, X., Li, X., Gao, X., Zhan, R.L., Hong Xia, W., Bajaj, P., Bally, I., Kumar, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Drafting the Kensington Pride Mango Genome. In: Plant & Animal Genome Conference XXIV, 9 - 13 January 2016, San Diego, CA.

Motagi, B.N., Desmae, H., Ajeigbe, H.A., Echekwu, C.A., Dramane, S., Tabo, R., Monyo, E., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Germplasm enhancement for increasing groundnut productivity and production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC) 2016, 6 - 9 November 2016, New Delhi, India.

Dillon, N., Innes, D., Broadley, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Bally, I.S. (2016) The Queensland Mango Genomics Initiative. In: Plant & Animal Genome Conference XXIV, 9 - 13 January 2016, San Diego, CA.

Chaturvedi, S., Singh, N.P., Mishra, N., Gaur, P. and Varshney, R.ORCID: 0000-0002-4562-9131 (2016) Tailoring chickpea varieties for amenability to machine harvesting. In: #Legumes4Africa: PanAfrican Grain Legume and World Cowpea Conference, 28 Feb - 04 Mar 2016, Livingstone, Zambia.

Motagi, B.N., Ajeigbe, H.A., Echekwu, C., Mohammed, S.G., Adnan, A.A., Omoigui, L.O., Desmae, H.M., Monyo, E., Okori, P., Janila, P., Upadhyaya, H.D., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tabo, R. (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: 8th International Conference of the Peanut Research Community: Advances in Arachis through Genomics & Biotechnology (AAGB-2015), 4 - 7 November 2015, Brisbane, Australia.

Dillon, N., Kuhn, D., Innes, D., Bally, I. and Varshney, R.ORCID: 0000-0002-4562-9131 (2015) Mango genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, 16 - 18 November 2015, Brisbane Convention and Exhibition Centre, Australia.

Bhat, R.S., Kolekar, R.M., Asha, B., Sukruth, M., Shirasawa, K., Sujay, V., Khedikar, Y., Sarvamangala, C., Gowda, M.V.C., Motagi, B.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: 8th International Conference of the Peanut Research Community: Advances in Arachis through Genomics & Biotechnology (AAGB-2015), 4 - 7 November 2015, Brisbane, Australia.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2015) Translational genomics for chickpea improvement. In: 3rd International Conference. Plant Genetics, Genomics, Bioinformatics and Biotechnology, 17 - 21 June 2015, Novosibirsk, Russia.

Monyo, E.S., Ndjeunga, J., Upadhyaya, H., Boukar, O., Mukankusi, C., Gaur, P., Sameer Kumar, C.V., Agrama, H., Rubyogo, J., Ganga Rao, N.V.P.R., Varshney, R.ORCID: 0000-0002-4562-9131, Gowda, C.L.L., Kumara Charyulu, D., Arega, A., Katungi, E., Siambi, M., Okori, P., Desmae, H., Beebe, S., Myer, M., Kamara, A., Boahen, S. and Ajeigbe, H. (2014) Achievements, Challenges and Lessons in Enhancing Productivity and Production of Major Tropical Legumes for sub-Saharan Africa and South Asia. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Thudi, M., Gaur, P.M., Samineni, S., Ganeshram, S., Niranjan, B., Ramaswamy, G. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) CaTILL: A resource for novel alleles for chickpea (Cicer arietinum) improvement. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Gang Rao, N.V.P.R., Ojiewo, C., Silim, S.N., Gaur, P.M., Gowda, C.L.L., Moses, S., Monyo, E.S., Fikre, A., Kileo, R., Kimurto, P., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Chickpea breeding and development efforts in Eastern and Southern Africa: Achievements and opportunities. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Singh, V.K., Khan, A.W., Takagi, H., Saxena, R.K., Kumar, V., Sharma, M., Sameer Kumar, C.V., Sinha, P., Chitikineni, A., Patil, S., Ghanta, A., Yamini, K.N., Parupalli, S., Muniswamy, S., Dharmaraj, P.S., Terauchi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Fast forward genetic mapping provide candidate genes for resistance to fusarium wilt and sterility mosaic disease resistance in pigeonpea (Cajanus cajan L. Millsp.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Jaganathan, D., Kale, S., Thudi, M., Ruperao, P., Kavi Kishore, P.B., Gaur, P.M., Mohan Katta, A.V.S.K., Nguyen, H.T., Batley, J., Edwards, D., Sutton, T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Fine mapping of a “QTL-hotspot” for drought tolerance in chickpea (Cicer arietinum L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Upadhyaya, H.D., Sharma, S., Dwivedi, S.L., Singh, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vetriventhan, M., Pattanashetti, S.K. and Lalitha, N. (2014) Genetic resources conservation and strategies for enhanced utilization in crop improvement. In: 4th International Workshop: Next-generation genomics and integrated breeding for crop improvement, 19th - 21 February 2014, Patancheruvu, India.

Kang, Y.J., Kim, S.K., Kim, M.Y., Lestari, P., Kim, K.H., Ha, B.K., Jun, T.H., Hwang, W.J., Lee, T., Lee, J., Shim, S., Yoon, M.Y., Jang, Y.E., Han, K.S., Taeprayoon, P., Yoon, N., Somta, P., Tanya, P., Kim, K.S., Gwag, J-G, Moon, J.K., Lee, Y.H., Jackson, S.A., Schafleitner, R., Srinives, P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Lee, S.H. (2014) Genome sequence of mungbean and insights into evolution within Vigna species. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kudapa, H., Agarwal, G., Doddamani, D., Kumar, V., Khan, A.W., Chitikineni, A., Katta, K., Gaur, P.M. and Krishnamurthy, L. (2014) Identification and validation of heat stress responsive genes in chickpea (Cicer arietinum L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Sinha, P., Saxena, R.K., Singh, V.K., Suryanarayana, V., Krishnamurthy, L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Identification of internal housekeeping genes for studying gene expression in pigeonpea by quantitative real-time PCR. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Ellis, N., Nagaraji, S., Beebe, S., Ghanem, M., Okori, P., Chaturvedi, S.K., Tamo, M., Agrawal, S.K., Gaur, P., Gopalakrishnan, S., Kumar, C.V.S., Varshney, R.ORCID: 0000-0002-4562-9131 and Njuguna, E.M. (2014) Nutrient-efficient, resilient and sustainable legumes for prosperity in the drylands. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Ganga Rao, N.V.P.R., Silim, S.N., Siambi, M., Monyo, E.S., Lyimo, S., Ubwe, R., Kananji, G.A.D., Obong, Y., Sameer Kumar, C.V., Gowda, C.L.L., Manuel, A., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea breeding in Eastern and Southern Africa: achievements and future prospects. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Roorkiwal, M., Rathore, A., Das, R.R., Singh, M.K., Srinivasan, S., Gaur, P.M., Bharadwaj, C., Tripathi, S., Hickey, J.M., Lorenz, A., Jannink, J.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Prediction of breeding values using genome wide markers for yield related traits in chickpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Prabhakaran, R., Varshney, R.ORCID: 0000-0002-4562-9131, Gali, K., Sharpe, A. and Buchwaldt, L. (2014) Resistance in chickpea to Ascochyta rabiei is conferred by genes encoding pathogen recognition and other genes in basic defense pathways. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Pandey, M.K., Rathore, A., Das, R.R., Khera, P., Upadhyaya, H.D., Jannink, J-L, Hickey, J.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Selection of appropriate genomic selection model in an unstructured germplasm set of peanut (Arachis hypogaea L.). In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Srinivasan, S., Gaur, P.M., Kamatam, S., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) A major QTL identified for vernalization response in chickpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Sameer Kumar, C.V., Saxena, K.B., Patil, S.B., Vijaykumar, R., Mula, M.G., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) A unique hybrid parental line identification system using obcordate leaf shape marker in Pigeonpea. In: 6th International Food Legume Research Conference/7th International Conference on Legume Genetics and Genomics, 7 - 11 July 2014, TCU Place Saskatoon, Saskatchewan, Canada.

Pandey, M.K., Khera, P., Bhat, R.S., Monyo, E., Varshney, R.K.ORCID: 0000-0002-4562-9131, Upadhyaya, H.D., Rathore, A., Vadez, V., Sheshashayee, M.S., Sriswathi, M., Govil, M., Gowda, M.V.C. and Kumar, V.A. (2013) Association mapping for resistance to abiotic and biotic stresses and agronomically important traits in peanut (Arachis hypogaea L.). In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Khera, P., Sriswathi, M., Roorkiwal, M., Upadhyaya, H.D., Janila, P., Ozias-Akins, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Development and utility of cost-effective SNP genotyping platform for genetics research and breeding applications in peanut. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Froenicke, L., Bertioli, D., Michelmore, R.W., Beitel, C., Scaglione, D., Pandey, M., Upadhyaya, H.D., Moretzsohn, M.C., Guimaraes, P., Leal-Bertioli, S.C.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Genome mapping by sequencing of the progenitors of the cultivated peanut, Arachis duranensis and A. ipaensis. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Genomics-assisted breeding in peanut (Arachis hypogaea L.): Present status and future prospects. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Upadhyaya, H.D., Singh, S., Sharma, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2013) Germplasm for groundnut improvement. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Janila, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Upadhyaya, U.D., Vadez, V., Sudini, H.K., Nagesh, P. and Nigam, S.N. (2013) Integrated molecular breeding for enhanced resistance to diseases and quality parameters in peanut. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Janila, P., Vasanthi, R., Dobariya, K.L., Bera, S.K., Misra, J.B., Nigam, S.N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K., Upadhyaya, H.D., Nagesh, P., Manohar, S.S., Sriswathi, M., Pawan, K., Radhakrishnan, T., Manivannan, N., Angrau, R.A.R.S., Junagadh, J.A.U., Junagadh, D.G.R., Cimmyt, G.C.P. and Coimbatore, T.N.A.U. (2013) Introgression of FAD (Fatty Acid Desaturase) mutant alleles for enhanced oil quality in groundnut using marker-assisted backcrossing. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Pandey, M.K., Janila, P., Nigam, S.N., Khera, P., Gowda, M.V.C., Patne, N., Sriswathi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Marker-assisted introgression of major QTL showed high resistance to leaf rust in the genetic background of elite peanut cultivars (Arachis hypogaea L.). In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Sharma, S., Mallikarjuna, N., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Peanut genetic enhancement through pre-breeding and genomics. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Pandey, M., Janila, P., Gowda, C., Guo, B., Liang, X., Bertioli, D.J., Rami, J-F, Isobe, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) QTLs from genome to field using markers and genetic maps for peanut improvement : W217. In: XXI Plant and Animal Genome Conference, 12 - 16 January 2013, San Diego, CA.

Guo, B., Pandey, M., Qiao, L., Wang, H., Culbreath, A., Varshney, R.ORCID: 0000-0002-4562-9131, Holbrook, C. and He, G. (2013) Revisiting T-population derived from Tifrunner x GT-C20 for achieving high density genetic maps and detecting disease resistance QTLs in peanut (Arachis hypogaea L.). In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Chen, X., Zhu, W., Chen, M., Liu, H., Yang, Z., Zhang, E., Wang, T., Zhong, N., Wang, M., Wen, S., Li, X., Yang, Q., Zhou, G., Li, S., Wu, H., Varshney, R.ORCID: 0000-0002-4562-9131, Liang, X., Yu, S., Li, H., Pan, L., Hong, Y., Chen, N., Zhu, F., Chi, X. and Guangzhou, G.A.A.S. (2013) The developmental transcriptome of peanut (Arachis hypogaea) pod. In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Holbrook, C., Brenneman, T.B., Bhat, R.S., Chen, C., Damicone, J., Burrow, M.D., Isleib, T., Dean, L., Wang, M.L., Vadez, V., Froencike, L., Jackson, S., Michelmore, R.W., Pandey, M.K., Upadhyaya, H.D., Rathore, A., Liao, B., Barkley, N., Guo, B. and Gowda, M.V.C. (2013) An international initiative for genome-wide association studies (GWAS) in peanut (Arachis hypogaea L.). In: 6th International Peanut Genomics Conference (AAGB-2013), 17 - 21 June 2013, Zhengzhou, China.

Qiao, L., Pandey, M., Anglin, N., Feng, S., Wang, H., Culbreath, A., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2013) A modified PCR protocol for consistent amplification of fatty acid desaturase (FAD) alleles in marker-assisted backcross breeding for high oleic trait in peanut. In: 6th International Peanut Conference (AAGB 2013), 17 - 21 June 2013, Zhengzhou, China.

Guo, B., Liu, X., Ozias-Akins, P., Zhang, X., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nwosu, V., Wilson, R.F. and Stalker, H.T. (2013) The peanut genome consortium and peanut genome sequence: Creating a better future through global food security. In: 2013 APS -MSA Joint Meeting. The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security, 10 - 14 August 2013, Austin, Texas.

Atlin, G., Buckler, E., Jannink, J-L, McCouch, S., Windhausen, V., Babu, R., Crossa, J., Lopez, M., Endelman, J., Varshney, R.ORCID: 0000-0002-4562-9131, Leung, H., Hash, C., Beyene, Y. and Semagn, K. (2012) Progress and challenges in the use of High-Density genetic markers by CGIAR breeding programs to increase genetic gains for major food crops in the developing world. In: International Annual Meeting American Society of Agronomy/ Crop Science Society of America/ Soil Science Society of America 2012, 21 - 24 Oct. 2012, Cincinnati, OH.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, C., Radhakrishnan, T., Bhimana, G., Pandey, M., Sujay, V., Koppolu, J., Vadez, V., Nigam, S., Upadhyaya, H., Khedikar, Y., Isobe, S., He, G., Bertioli, D., Knapp, S. and Cook, D. (2011) Towards integrating genomics in breeding in groundnut (Arachis hypogaea L.). In: Plant & Animal Genomes XIX Conference, 15 - 19 January 2011, Town & Country Convention Center, San Diego.

Varshney, R.ORCID: 0000-0002-4562-9131, Nayak, S., Hiremath, P., Thudi, M., Sivakumar, C., Woodward, J., Thakur, V., Gujaria, N., Jahnavi, K., Srivani, G., Farmer, A. and Kashiwagi, J. (2010) Developing genomic resources for enabling genomics-assisted breeding in Chickpea (Cicer arietinum L.). In: Plant & Animal Genome Conference XVIII, 9 - 13 Jan. 2010, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, M.V.C., Thankappan, R., Koppolu, R., Khedikar, Y.P., Senthilvel, S., Bhimana, G., Vadez, V., Nigam, S.N., Upadhyaya, H.D., Isobe, S., He, G., Bertioli, D.J., Knapp, S.J., Cook, D.R., Hoisington, D.A. and Butterfield, M. (2010) Developing genomic resources for facilitating molecular breeding in cultivated groundnut (Arachis hypogaea L.). In: Plant & Animal Genome Conference XVIII, 9 - 13 Jan. 2010, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Saxena, R.K. (2010) Discovery of single feature polymorphisms in Pigeonpea using soybean genome arrays. In: Plant & Animal Genome Conference XVIII, 9 - 13 Jan. 2010, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Establishing genomics-assisted breeding foundation in chickpea for enhancing crop productivity in Africa and Asia. In: International Symposium on Genomics of Plant Genetic Resources II, 24 - 27 April 2010, Bologna, Italy.

Dubey, A., Bohra, A., Kumar, N., Saxena, R., Penmetsa, R.V., Cheung, R.V., Saxena, F., Gothawal, K., Singh, R., Kishor, D., Upadhyaya, H.D., Cook, D. and Varshney, R.ORCID: 0000-0002-4562-9131 (2010) Large scale development of BAC-end associated SSR markers in Pigeonpea [Cajanus cajan (L.) Millspaugh]. In: Plant & Animal Genome Conference XVIII, 9 - 13 Jan. 2010, San Diego, CA.

This, D., Courtois, B., Philippe, R., Mournet, P., Billot, C., Glaszmann, J-C, Schaftleitner, R., Simon, R., Rojas, P., Bonierbale, M., Varshney, R.ORCID: 0000-0002-4562-9131, Hash, C.T., Upadhyaya, H.D., Nayak, S., Brunel, D., El Malki, R., Le Paslier, M-C, McNally, K., Baum, M., Choumane, W., Von Korff, M., Blair, M. and Fregene, M. (2010) Some data on allele diversity at orthologous candidate genes in GCP crops. In: Plant & Animal Genome Conference XVIII, 9 - 13 Jan. 2010, San Diego, CA.

Rathore, A., Nepolean, T., Balaji, J., Mallikarjuna, G., Manna, S., Hoisington, D., Chandra, S., McLaren, G., Davenport, G., Crossa, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) iMAS 2.0: A unified computing and decision support system for marker-aided breeding. In: International Symposium on Genomics of Plant Genetic Resources II, 24 - 27 April 2010, Bologna, Italy.

Close, T.J., Lonardi, S., Luo, M.C., Dolezel, J., Bhat, P.R., Madishetty, K., Svensson, J.T., Zheng, J., Wu, Y., Bozdag, S., Resnik, J., Wanamaker, S., Fenton, R.D., Moscou, M.J., Condamine, P., Rodriguez, E., Roose, M.L., Ma, Y., You, F., Bartoš, J., Šimková, H., Rostoks, N., Ramsay, L., Marshall, D.F., Waugh, R., Stein, N., Graner, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sato, K., Wing, R., Schulman, A., Muehlbauer, G.J., Kleinhofs, A., Langridge, P., Atkins, M., Wise, R.P., Hayes, P.M., De Young, J., Mammadov, J., Maroof, S., Feuillet, C., Laurie, D., Sutton, T., Collins, N.C., Feiz, L., Blake, T., Falk, A., Cooper, L., Dilbirligi, M., Gill, K., Dubcovsky, J., Lemaux, P., Gustafson, P., Szűcs, P., Bilgic, H., Morrell, P.L. and Steffenson, B. (2009) Coupling ESTs, SNPs, BACs, mapping populations, flow-sorting and synteny to access the Barley Genome. In: XVII Plant and Animal Genome (PAG) Conference, 10 - 14 January 2009, San Diego, CA.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, M.V.C., Radhakrishnan, T., Ravi, K., Khedikar, Y., Senthilvel, S., Gautami, B., Vadez, V., Nigam, S.N., Upadhyaya, H.D., Isobe, S., He, G.H., Bertioli, D.J., Knapp, S.J., Cook, D.R., Hoisington, D.A. and Butterfield, M.K. (2009) Development of genomic resources for cultivated groundnut (Arachis hypogaea L.). In: 4th International Conference of the Peanut Research Community on Advances in Arachis through Genomics and Biotechnology (AAGB-2009) & West and Central Africa Regional Peanut Workshop, 19 - 22 October 2009, Bamako, Mali.

Upadhyaya, H.D., Dwivedi, S.L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gowda, C.L.L., Bhattacharjee, R., Hoisington, D.A. and Vadez, V. (2009) Enhancing the value of legume genetic resources using core/mini core and applied genomic tools. In: International Conference on Current Trends in Biotechnology and Implications in Agriculture, 19 - 21 February 2009, Meerut, India.

Upadhyaya, H.D., Bhattacharjee, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Hoisington, D.A., Reddy, K.N. and Singh, S. (2008) Assessment of genetic diversity in pigeonpea using SSR markers. In: Annual Joint Meeting Of ASA/CSSA, 5 - 9 October 2008, Houston, USA.

Khedikar, Y.P., Patgar, K.V., Gowda, M.V.C., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2008) Construction of a genetic linkage map and QTL analysis for late leaf spot and rust in groundnut (Arachis hypogaea L.). In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology (AAGB-2008), 4 - 8 November 2008, ICRISAT, Hyderabad (AP), India.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mahendar, T., Aruna, R., Nigam, S.N., Neelima, K., Vadez, V. and Hoisington, D.A. (2008) Extraordinary high allelic diversity in a groundnut (Arachis hypogaea L.) germplasm collection assayed by robust and informative SSR markers. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology (AAGB-2008), 4 - 8 November 2008, ICRISAT, Hyderabad (AP), India.

Gowda, M.V.C., Khedikar, Y.P., Kusuma, V.P., Sujay, V., Bhat, S., Upadhyaya, H.D. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2008) Genetic enhancement of resistance to foliar diseases - strategies and prospects. In: 3rd International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4 - 8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Castillo, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Graner, A. and Hernandez, P. (2008) High transferability and polymorphism of barley EST-SSR markers for the analysis of gene biodiversity in Hordeum chilense. In: Meeting of the Eucarpia Cereal Section, 13 - 17 November 2006, Lleida, Spain.

Nayak, S., Balaji, J., Chattopadhyay, D., Upadhyaya, H.D., Hash, T., Polavarapu, K.K.B., Baum, M., McNally, K., Rodriguez, L.M., Blair, M.W., This, D., Hoisington, D.A. and Varshney, R.ORCID: 0000-0002-4562-9131 (2008) Isolation and sequence analysis of DREB2A homologs in five crop species. In: Plant & Animal Genomes XVI Conference, 12 - 16 January 2008, Town & Country Convention Center. San Diego, CA.

Nayak, S., Balaji, J., Chattopadhyay, D., Upadhyaya, H.D., Hash, T., Polavarapu, K.K.B., Baum, M., McNally, K., Rodriguez, L.M., Blair, M.W., This, D., Hoisington, D.A. and Varshney, R.ORCID: 0000-0002-4562-9131 (2008) Isolation and sequence analysis of DREB2A homologs in five crop species. In: Plant & Animal Genomes XVI Conference, 12 - 16 January 2008, Town & Country Convention Center. San Diego, CA.

Vadez, V., Krishnamurthy, L., Ratnakumar, P., Rao, S., Devi, J.M., Srivastava, N., Sharma, K.K., Bhatnagar-Mathur, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Upadhyaya, H.D., Aruna, R. and Nigam, S.N. (2008) Phenotypic assessment of groundnut response to key abiotic stress. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology (AAGB-2008), 4 - 8 November 2008, ICRISAT, Hyderabad (AP), India.

Upadhyaya, H.D., Nanumasa, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Sharma, H.C., Kashiwagi, J., Gowda, C.L.L. and Dwivedi, S.L. (2008) Phenotyping reference set of chickpea (Cicer arietinum) for agronomic traits including resistance to legume pod border (Helicoverpa armigera). In: GCP Annual Research Meeting 2008, 16 - 20 September 2008, Bangkok, Thailand.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bertioli, D.J., Moretzsohn, M.C., Ravi, K., Vadez, V., Krishnamurthy, L., Aruna, R., Nigam, S.N., Moss, B.J., Seetha, K., He, G., Knapp, S.J. and Hoisington, D.A. (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology (AAGB-2008), 4 - 8 November 2008, ICRISAT, Hyderabad (AP), India.

Upadhyaya, H.D., Dwivedi, S.L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Hoisington, D.A. and Gowda, C.L.L. (2008) Using genetic and genomic resources to broaden the genetic base of cultivated groundnut. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology (AAGB-2008), 4 - 8 November 2008, ICRISAT, Hyderabad (AP), India.

Upadhyaya, H.D., Dwivedi, S.L., Bhattacharjee, R., Udupa, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Furman, B.J., Baum, M., Gowda, C.L.L., Kashiwagi, J., Vadez, V., Krishnamurthy, L., Vp, P., Hoisington, D.A., Chandra, S. and Sube, S. (2007) Mining allelic diversity associated with drought and salinity tolerance in reference subset of chickpea germplasm collections. In: Annual Research Meeting. Generation Challenge Program 2007, 12 - 16 September 2007, Benoni, South Africa.

Book Chapter

Satpute, G.K., Ratnaparkhe, M.B., Chandra, S., Kamble, V.G., Kavishwar, R., Singh, A.K., Gupta, S., Devdas, R., Arya, M., Singh, M., Sharma, M.P., Kumawat, G., Shivakumar, M., Nataraj, V., Kuchlan, M.K., Rajesh, V., Srivastava, M.K., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Nguyen, H.T. (2021) Breeding and molecular approaches for evolving drought-tolerant soybeans. In: Giri, B. and Sharma, M.P., (eds.) Plant Stress Biology. Springer, Singapore, pp. 83-130.

Monyo, E.S., Akpo, E., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) A Cross-Case analysis of innovation platform experiences in seven countries in West and East Africa and South Asia. In: Akpo, Essegbemon, Ojiewo, C>O., Kapran, I., Omoigui, L.O. and Diama, A., (eds.) Enhancing Smallholder Farmers' Access to Seed of Improved Legume Varieties Through Multi-stakeholder Platforms. Springer, pp. 185-197.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Better-off women boosting groundnut business in Ghana. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 91-104.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Breakthroughs in groundnut production communities in Nigeria. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 77-83.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Common bean value chain actors share their feeling about TL projects in Tanzania. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 33-56.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Apko, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 105-106.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Empowered communities tell their own stories from common bean production in Uganda. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 65-75.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Enthusiasm of actors within the groundnut value chain sharing impact stories in Uganda. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 57-64.

Serba, D.D., Yadav, R.S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Gupta, S.K., Mahalingam, G., Srivastava, R.K., Gupta, R., Perumal, R. and Tesso, T.T. (2020) Genomic designing of Pearl Millet: A resilient crop for arid and Semi-arid environments. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Cereal Crops. Springer, pp. 221-286.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Impact stories and testimonies from diverse actors in groundnut value chain in Tanzania. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 3-32.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Women at the center of Cowpea value chain development in Nigeria. In: Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 85-90.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) A brief overview of smallholder farmers’ access to seed of improved legume varieties. In: Apko, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K., (eds.) Sowing Legume Seeds, Reaping Cash. Springer, Singapore, pp. 1-2.

Gangurde, S.S., Kumar, R., Pandey, A.K., Burow, M., Laza, H.E., Nayak, S.N., Guo, B., Liao, B., Bhat, R.S., Madhuri, N., Hemalatha, S., Sudini, H.K., Janila, P., Latha, P., Khan, H., Motagi, B.N., Radhakrishnan, T., Puppala, N., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2019) Climate-Smart groundnuts for achieving high productivity and improved quality: Current status, challenges, and opportunities. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Oilseed Crops. Springer, Cham, pp. 133-172.

Bohra, A., Pareek, S., Jones, M., Jha, U.C., Satheesh Naik, S.J., Kaashyap, M., Patil, P.G., Maurya, A.K., Saxena, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Genomic interventions to improve resilience of pigeonpea in changing climate. In: Kole, C., (ed.) Genomic Designing of Climate-Smart Pulse Crops. Springer, Cham, pp. 107-134.

Saxena, R.K., Saxena, K.B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2019) Pigeonpea (Cajanus cajan L. Millsp.): An ideal crop for sustainable agriculture. In: Al-Khayri, J.M., Jain, S.M. and Johnson, D.V., (eds.) Advances in Plant Breeding Strategies: Legumes. Springer, pp. 409-429.

Roorkiwal, M., Jain, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Advances in chickpea genomic resources for accelerating the crop improvement. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 53-67.

Bharadwaj, C., Sachdeva, S., Singh, R.K., Patil, B.S., Roorkiwal, M., Chaturvedi, S. and Varshney, R.ORCID: 0000-0002-4562-9131 (2018) Chickpea Genomics. In: Gosal, S. and Wani, S., (eds.) Biotechnologies of Crop Improvement. Springer, Cham, pp. 289-316.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M. and Muehlbauer, F.J. (2018) Future Prospects for Chickpea Research. In: Varshney, R.K., Thudi, M. and Muehlbauer, F.J., (eds.) The Chickpea Genome. Springer, Cham, pp. 135-142.

Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Groundnut entered Post-genome sequencing era: Opportunities and challenges in translating genomic information from genome to field. In: Gosal, S. and Wani, S., (eds.) Biotechnologies of Crop Improvement. Springer, Cham, pp. 199-209.

Samineni, S., Thudi, M., Sajja, S.B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gaur, P.M. (2018) Impact of Genomics on Chickpea Breeding. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 125-134.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Chitikineni, A. (2018) Plant Genetics and Molecular Biology: An Introduction. In: Varshney, R.K., Pandey, M.K. and Chitikineni, A., (eds.) Plant Genetics and Molecular Biology. Springer, Cham, pp. 1-9.

Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2018) Requirement of Whole-Genome sequencing and background history of the national and international genome initiatives. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 107-115.

Khan, A.W., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Edwards, D. (2018) Sequencing the Chickpea Genome. In: Varshney, R.K., Thudi, M. and Muehlbauer, F., (eds.) The Chickpea Genome. Springer, Cham, pp. 117-123.

Vishwakarma, M.K., Nayak, S.N., Guo, B., Wan, L., Liao, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Pandey, M.K. (2017) Classical and molecular approaches for mapping of genes and Quantitative Trait Loci in peanut. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 93-116.

Jain, A., Roorkiwal, M., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Current status and prospects of genomic selection in legumes. In: Varshney, R., Roorkiwal, M. and Sorrells, M., (eds.) Genomic Selection for Crop Improvement. Springer, Cham, pp. 131-147.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (2017) Future prospects. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 99-104.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Puppala, N. (2017) Future prospects for peanut improvement. In: Varshney, R., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 165-169.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M. and Sorrells, M.E. (2017) Genomic selection for crop improvement: An introduction. In: Varshney, R., Roorkiwal, M. and Sorrells, M., (eds.) Genomic Selection for Crop Improvement. Springer, Cham, pp. 1-6.

Wang, H., Guo, X., Pandey, M.K., Ji, X., Varshney, R.K.ORCID: 0000-0002-4562-9131, Nwosu, V. and Guo, B. (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 117-133.

Saxena, K.B., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Key plant and grain characteristics and their importance in breeding and adaptation of pigeonpea cultivars. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 5-15.

Thudi, M., Saxena, R.K., Pandey, M.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Legume genomics: A perspective. In: Dashavantha Reddy, V., Venkateswara rao, K. and Rama Krishna, K., (eds.) Insights on Global Challenges and Opportunities for the Century Ahead. BS Publications, pp. 321-326.

Nayak, S.N., Singh, V.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Marker-Assisted Selection. In: Thomas, B., Murray, B.G. and Murphy, D.J., (eds.) Encyclopedia of Applied Plant Sciences. Academic Press, pp. 183-197.

Bohra, A., Pareek, S., Jha, R., Saxena, R.K., Singh, I.P., Pandey, G., Mishra, R.K., Singh, F., Kaashyap, M., Joshi, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Modern genomic tools for pigeonpea improvement: Status and prospects. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 41-54.

Mir, R.R., Rather, I.A., Bhat, M.A., Parray, G.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Molecular Mapping of Genes and QTLs in Pigeonpea. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 55-64.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (2017) The Pigeonpea Genome: An Overview. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 1-4.

Nayak, S.N., Pandey, M.K., Jackson, S.A., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Sequencing ancestor diploid genomes for enhanced genome understanding and peanut improvement. In: Varshney, R.K., Pandey, M. and Puppala, N., (eds.) The Peanut Genome. Springer, Cham, pp. 135-147.

Singh, V.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Sequencing pigeonpea genome. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 93-97.

Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Whole-Genome sequencing of Pigeonpea: Requirement, background history, current status and future prospects for crop improvement. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 81-91.

Mallikarjuna, N., Saxena, R.K., Byre Gowda, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2017) Wide crossing technology for pigeonpea improvement. In: Varshney, R., Saxena, R. and Jackson, S., (eds.) The Pigeonpea Genome. Springer, Cham, pp. 31-39.

Guo, B., Khera, P., Wang, H., Peng, Z., Sudini, H., Wang, X., Osiru, M., Chen, J., Vadez, V., Yuan, M., Wang, C.T., Zhang, X., Waliyar, F., Wang, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Stalker, H.T. and Wilson, R.F., (eds.) Peanuts. Elsevier Inc., pp. 163-207.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Applications of bioinformatics tools to Genetic Mapping and Diversity in Peanut K Venkatesh, A Roja Rani, P Amareshwari and Ramesh Katam. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 240-256.

Mallikarjuna, N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Genetics, Genomics and Breeding of Peanut: An Introduction. In: Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 25-36.

Mallikarjuna, N., Shilpa, K., Pandey, M., Janila, P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Groundnut. In: Singh, M., Bisht, I.S. and Dutta, M., (eds.) Broadening the Genetic Base of Grain Legumes. Springer India, pp. 161-173.

Pandey, M.K., Guo, B., Holbrook, C.C., Janila, P., Zhang, X., Bertioli, D.J., Isobe, S., Liang, X. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Molecular Markers, Genetic Maps and QTLs for Molecular Breeding in Peanut. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 103-137.

Chaturvedi, S.K., Singh, N.P., Gaur, P.M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mishra, N. (2014) New challenges in breeding chickpea under changing climate. In: Dixit, G.P., Singh, J. and Singh, N.P., (eds.) Pulses: Challenges & Opportunities. Indian Society of Pulses Research and Development, pp. 102-113.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Peanut Breeding Boshou Liao. In: Mallikarjuna, N. and Varshney, R.K., (eds.) Genetics, Genomics and Breeding of Peanuts. CRC Press, pp. 85-102.

Mallikarjuna, N., Srikanth, S., Sameer Kumar, C.V., Srivastava, R.K., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2014) Pigeonpea. In: Singh, M., Bisht, I.S. and Dutta, M., (eds.) Broadening the Genetic Base of Grain Legumes. Springer India, pp. 149-159.

Gaur, P.M., Thudi, M., Samineni, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Advances in Chickpea Genomics. In: Gupta, S., Nadarajan, N. and Sen Gupta, D., (eds.) Legumes in the Omic Era. Springer, New York, pp. 73-94.

Bohra, A., Saxena, R.K., Saxena, K.B., Sameer Kumar, C.V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Advances in Pigeonpea Genomics. In: Gupta, S., Nadarajan, N. and Gupta, D.S., (eds.) Legumes in the Omic Era. Springer, New York, pp. 95-110.

Gupta, P.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Cereal Genomics: Excitements, Challenges and Opportunities. In: Gupta, P.K. and Varshney, R.K., (eds.) Cereal Genomics II. Springer, Dordrecht, pp. 1-9.

Sharma, S., Upadhyaya, H.D., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2013) Chickpea. In: Singh, M., Upadhyaya, H.D. and Bisht, I.S., (eds.) Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, pp. 81-111.

Mir, R.R., Hiremath, P.J., Riera-Lizarazu, O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2013) Evolving molecular marker technologies in plants: From RFLPs to GBS. In: Lübberstedt, T. and Varshney, R.K., (eds.) Diagnostics in Plant Breeding. Springer, Dordrecht, pp. 229-247.

McKeown, P., Keshavaiah, C., Fort, A., Tuteja, R., Chatterjee, M., Varshney, R.ORCID: 0000-0002-4562-9131 and Spillane, C. (2013) Genomics in agriculture and food processing. In: Biotechnology in Agriculture and Food Processing. CRC Press, pp. 45-70.

Burow, M.D., Leal-Bertioli, S.C.M., Simpson, C.E., Ozias-Akins, P., Chu, Y., Denwar, N.N., Chagoya, J., Starr, J.L., Moretzsohn, M.C., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131, Holbrook, C.C. and Bertioli, D.J. (2013) Marker-Assisted Selection for Biotic Stress Resistance in Peanut. In: Varshney, R.K. and Tuberosa, R., (eds.) Translational Genomics for Crop Breeding. John Wiley & Sons Inc., pp. 125-150.

Upadhyaya, H.D., Sharma, S., Reddy, K.N., Saxena, R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Gowda, C.L.L. (2013) Pigeonpea. In: Singh, M., Upadhyaya, H.D. and Bisht, I.S., (eds.) Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, pp. 181-202.

Kulwal, P.L., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Cropping breeding for sustainable agriculture... In: Meyers, R.A., (ed.) Encyclopedia of Sustainability Science and Technology. Springer, New York, pp. 2527-2540.

Mir, R.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Future Prospects of Molecular Markers in Plants. In: Henry, R.J., (ed.) Molecular Markers in Plants. Wiley, pp. 169-190.

Kulwal, P., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Genomics interventions in crop breeding for sustainable agriculture. In: Meyers, R.A., (ed.) Encyclopedia of Sustainability Science and Technology. Springer, New York.

Fakrudin, B., Tuberosa, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Omics Techniques in Crop Research: An Overview. In: Tuteja, N., Gill, S.S., Tiburcio, A.F. and Tuteja, R., (eds.) Improving Crop Resistance to Abiotic Stress. Wiley, pp. 289-300.

Mir, R.R., Thudi, M., Chamarthi, S.K., Krishnamurthy, L., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) Translational root genomics for crop improvement. In: Crespi, M., (ed.) Root Genomics and Soil Interactions. Wiley-Blackwell, pp. 249-265.

Burstin, J., Gallardo, K., Mir, R.R., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Duc, G. (2011) Improving protein content and nutrition quality. In: Pratap, A. and Kumar, J., (eds.) Biology and Breeding of Food Legumes. CABI.

Charmarthi, S.K., Kumar, A., Vuong, T.D., Blair, M.W., Gaur, P.M., Nguyen, H.T. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Trait mapping and molecular breeding. In: Pratap, A. and Kumar, J., (eds.) Biology and Breeding of Food Legumes. CABI.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pazhamala, L., Kashiwagi, J., Gaur, P.M., Krishnamurthy, L. and Hoisington, D. (2010) Genomics and physiological approaches for root trait breeding to improve drought tolerance in chickpea (Cicer arietinum L.). In: de Oliveira, A.C. and Varshney, R.K., (eds.) Root Genomics. Springer, Berlin, Heidelberg, pp. 233-250.

de Oliveira, A.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2010) Introduction to Root Genomics. In: de Oliveira, A.C. and Varshney, R.K., (eds.) Root Genomics. Springer, Berlin, Heidelberg, pp. 1-10.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thundi, M., May, G.D. and Jackson, S.A. (2010) Legume Genomics and Breeding. In: Janick, J., (ed.) Plant Breeding Reviews. Wiley-Blackwell, pp. 257-304.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2009) Gene-Based marker systems in plants: High throughput approaches for marker discovery and genotyping. In: Jain, S.M. and Brar, D.S., (eds.) Molecular Techniques in Crop Improvement. Springer, Dordrecht, pp. 119-142.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Mahendar, T., Aggarwal, R.K. and Börner, A. (2007) Genic Molecular Markers in Plants: Development and Applications. In: Varshney, R.K. and Tuberosa, R., (eds.) Genomics-Assisted Crop Improvement. Springer, Dordrecht, pp. 13-29.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (2007) Genomics-Assisted Crop Improvement: An Overview. In: Varshney, R.K. and Tuberosa, R., (eds.) Genomics-Assisted Crop Improvement. Springer, Dordrecht, pp. 1-12.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Hoisington, D.A., Upadhyaya, H.D., Gaur, P.M., Nigam, S.N., Saxena, K., Vadez, V., Sethy, N.K., Bhatia, S., Aruna, R., Channabyre Gowda, M.V. and Singh, N.K. (2007) Molecular genetics and breeding of grain legume crops for the Semi-Arid Tropics. In: Varshney, R.K. and Tuberosa, R., (eds.) Genomics-Assisted Crop Improvement. Springer, Dordrecht, pp. 207-241.

Book

Akpo, E., Ojiewo, C.O., Kapran, I., Omoigui, L.O., Diama, A. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2021) Enhancing Smallholder Farmers' Access to Seed of Improved Legume Varieties Through Multi-stakeholder Platforms: Learning from the TLIII project Experiences in sub-Saharan Africa and South Asia. Springer.

Akpo, E., Ojiewo, C.O., Omoigui, L.O., Rubyogo, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2020) Sowing legume seeds, Reaping cash: A renaissance within communities in Sub-Saharan Africa. Springer, Singapore.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Chitikineni, A. (Eds) (2018) Plant Genetics and Molecular Biology. Springer, Cham.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M. and Sorrells, M.E. (Eds) (2017) Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer, Cham.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Puppala, N. (Eds) (2017) The Peanut Genome. Springer International Publishing.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Saxena, R.K. and Jackson, S.A. (Eds) (2017) The Pigeonpea Genome. Springer International Publishing.

Monyo, E.S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. International Crops Research Institute for the Semi-arid tropics.

Jain, M., Garg, R. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2014) Abiotic stress: Molecular genetics and genomics. Frontiers Media S.A..

Mallikarjuna, N. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2014) Genetics, Genomics and Breeding of Peanuts. CRC Press.

Gupta, P.K. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2013) Cereal Genomics II. Springer, Dordrecht.

Lübberstedt, T. and Varshney, R.K. (Eds)ORCID: 0000-0002-4562-9131 (2013) Diagnostics in Plant Breeding. Springer, Dordrecht.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (Eds) (2013) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality. John Wiley & Sons Inc..

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (Eds) (2013) Translational Genomics for Crop Breeding: Biotic Stress. John Wiley & Sons Inc..

Costa de Oliveira, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2011) Root Genomics. Springer, Berlin, Heidelberg.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Tuberosa, R. (Eds) (2007) Genomics-Assisted Crop Improvement. Springer, Dordrecht.

Varshney, R.K.ORCID: 0000-0002-4562-9131 and Koebner, R.M.D.(Eds) (2006) Model Plants and Crop Improvement. CRC Press.

Report

Wani, S.P., Bergvinson, D., Raju, K.V., Gaur, P.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2016) Mission India for Transforming Agriculture (MITrA). International Crops Research Institute for the Semi-arid tropics

Others

Fountain, J., Bajaj, P., Yang, L., Pandey, M., Nayak, S., Kumar, V., Jayale, A., Chitikineni, A., Lee, R., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Comparative transcriptome analysis of Aspergillus flavus isolates under different oxidative stresses and culture media. Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326152).

Ji, X., Guo, X., Fountain, J., Pandey, M., Nayak, S., Wang, H., Holbrook, C., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Identification of genomic region controlling resistance to aflatoxin contamination in a peanut recombinant inbred line population (Tifrunner XGT-C20). Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326149).

Wang, H., Guo, X., Pandey, M., Ji, X., Holbrook, C., Culbreath, A., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2016) Phenotypic assessments of peanut nested association mapping (NAM) populations. Research Project. Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#326146).

Fountain, J., Baja, P., Yang, L., Pandey, M., Nayak, S., Chitikineni, A., Chen, S., Lee, R., Scully, B., Kemerait, R., Varshney, R.ORCID: 0000-0002-4562-9131 and Guo, B. (2013) RNAseq analysis reveals oxidative stress responses of Aspergillus flavus related to stress tolerance and aflatoxin production. Research Project: Developing Genomic Approaches to Improve Resistance to Diseases and Aflatoxin Contamination in Peanut and Corn (#329427).

Vales, M.I., Saxena, K.B., Saxena, R.K., Patil, S.B., Sawargaonkar, S.L., Sultana, R., Sharma, M., Pande, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2012) PRIL_A, PRIL_B and PRIL_C: Pigeonpea Recombinant Inbred Line Mapping Populations Segregating for Resistance to Fusarium Wilt and Sterility Mosaic Disease. Poster. International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India .

Knapp, S.J., Ozias-Akins, P., Hoisington, D., Aruna, R. and Varshney, R.ORCID: 0000-0002-4562-9131 (2011) G4008.06: Single nucleotide polymorphism discovery, validation, and mapping in groundnut. Project Updates. CGIAR Generation Challenge Program .

Krishnamurthy, L., Varshney, R.ORCID: 0000-0002-4562-9131, Thudi, M., Upadhyaya, H.D., Hoisington, D., Tobita, S., Ito, O. and Sheshshayee, M.S. (2011) G4008.12: Linking genetic diversity with phenotype for drought tolerance traits through molecular and physiological characterization of a diverse reference collection of chickpea. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.K.ORCID: 0000-0002-4562-9131, May, G.D., Farmer, A., Saxena, K., Singh, N.K. and Kulwal, P.L. (2011) G4008.47: Developing genomic resources for pigeonpea using next generation sequencing technologies. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.ORCID: 0000-0002-4562-9131, Thakur, V., Balaji, J., Shah, T., Bhanuprakash, A., May, G., Farmer, A., Studholme, D., Jones, J., Mauleon, R.P. and Bruskiewich, R. (2011) G4009.04: Data analysis support for existing projects in SP2 with emphasis on analysis of next generation sequencing data. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.K.ORCID: 0000-0002-4562-9131, Kimurto, P., Mulwa, R., Gaur, P. and Thudi, M. (2011) G4009.07.03: Marker-assisted backcrossing (MABC) for drought tolerance in chickpea-students for analysis of drought tolerance in chickpea (TLI-Kenyan student). Project Updates. CGIAR Generation Challenge Programme .

Vadez, V., Nigam, N., Varshney, R.K.ORCID: 0000-0002-4562-9131, Mponda, O., Kapewa, T., Ndoye, O. and Faye, I. (2011) G4009.07.04: Capacity-building à la carte 2009 – Ensuring ‘good’ and relevant phenotypic data to feed molecular breeders: the need for long-term training of scientists of NARS partners to TLI Objective 1. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.ORCID: 0000-0002-4562-9131, Shah, T., Marshall, D., Milne, I., Rathore, A., Azam, S., Bhanuprakash, A., Pradeep, R., Edwards, D., May, G. and Farmer, A. (2011) G4010.05: Development of Integrated SNP Mining and Utilization (ISMU) pipeline based on next generation sequencing (NGS) and high-throughput (HTP) genotyping technologies for facilitating molecular breeding. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.K.ORCID: 0000-0002-4562-9131, Gaur, P., Krishnamurthy, L., Thudi, M., Kumar, C.S., Ganga Rao, N.V.P.R., Kimurto, P., Fikre, A., Cook, D. and Luo, M.C. (2011) G6007.04/G6010.04: Improve chickpea productivity for marginal environments in Sub-Saharan Africa and Asia- Phase II. Project Updates. CGIAR Generation Challenge Programme .

Gaur, P., Varshney, R.ORCID: 0000-0002-4562-9131, Krishnamurthy, L., Vadez, V., Thudi, M., Jukanti, A., Sheshshaye, M.S., Jayalakshmi, V., Singh, S.J. and Yasin, M. (2011) G7009.02: Mapping and validation of QTLs associated with drought tolerance traits in chickpea. Project Updates. CGIAR Generation Challenge Programme .

Varshney, R.K.ORCID: 0000-0002-4562-9131, Thudi, M., Kumar, C.S., Saxena, R., Gaur, P., Kimurto, P. and Fikre, A. (2011) G7010.06.01: Accelerating development of genomic resources and strengthening NARS partner capacities for enhancing adoption of molecular breeding for drought tolerance in chickpea. Project Updates. CGIAR Generation Challenge Programme .

Upadhyaya, H.D., Bharathi, A., Gowda, C.L.L., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Dwivedi, S.L. (2008) Phenotyping reference set of foxtail millet (Setaria italica) for Agronomic Traits. Flyer. International Crops Research Institute for Semi-Arid Tropics .

This list was generated on Thu May 26 23:16:55 2022 UTC.