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Publications: Tobe, Shanan

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Number of items: 71.

2022

Guareschi, E.E.ORCID: 0000-0001-9883-9872, Nicholls, P.K.ORCID: 0000-0001-7071-3055, Evans, N.J., Barham, M., McDonald, B.J., Magni, P.A. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2022) Bone diagenesis in the marine environment‐I: Characterization and distribution of trace elements in terrestrial mammalian bones recovered from historic shipwrecks. International Journal of Osteoarchaeology, 32 (2). pp. 509-523.

2021

Guareschi, E.ORCID: 0000-0001-9883-9872, Evans, N., Rankenburg, K., McDonald, B.J., Tobe, S.S.ORCID: 0000-0002-4854-6278, Nicholls, P.K.ORCID: 0000-0001-7071-3055 and Magni, P.A. (2021) Bone diagenesis in the marine environment: Trace element distribution in mammalian bones recovered from shipwrecks. In: 73rd AAFS Annual Scientific Meeting: One Academy Pursing Justice Through in Evidence, 15 - 19 February 2021, Virtual.

Guareschi, E.E.ORCID: 0000-0001-9883-9872, Haig, D.W., Tobe, S.S.ORCID: 0000-0002-4854-6278, Nicholls, P.K.ORCID: 0000-0001-7071-3055 and Magni, P.A. (2021) Foraminifera – A new find in the microtaphonomical characterisation of bones from marine archaeological excavations. International Journal of Osteoarchaeology, 31 (6). pp. 1270-1275.

Guareschi, E.E.ORCID: 0000-0001-9883-9872, Tobe, S.S.ORCID: 0000-0002-4854-6278, Nicholls, P.K.ORCID: 0000-0001-7071-3055 and Magni, P.A. (2021) Taphonomy and diagenesis of human bone in underwater archaeology: A review of the current status and the proposal of Post-Mortem Submersion Interval (PMSI) as a potential forensic application. Journal of Maritime Archaeology, 16 . pp. 57-75.

2020

Potoczniak, M.J., Chermak, M., Quarino, L., Tobe, S.S.ORCID: 0000-0002-4854-6278 and Conte, J. (2020) Development of a multiplex, PCR-based genotyping assay for African and Asian elephants for forensic purposes. International Journal of Legal Medicine, 134 (1). pp. 55-62.

Dormontt, E.E., Jardine, D.I., van Dijk, K-J, Dunker, B.F., Dixon, R.R.M., Hipkins, V.D., Tobe, S.ORCID: 0000-0002-4854-6278, Linacre, A. and Lowe, A.J. (2020) Forensic validation of a SNP and INDEL panel for individualisation of timber from bigleaf maple (Acer macrophyllum Pursch). Forensic Science International: Genetics, 46 . Art. 102252.

2019

Conte, J., Potoczniak, M.J., Mower, C. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2019) ELEquant: A developmental framework and validation of forensic and conservation real-time PCR assays. Molecular Biology Reports, 46 (2). pp. 2093-2100.

Guareschi, E.ORCID: 0000-0001-9883-9872, Maker, G.L.ORCID: 0000-0003-1666-9377 and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2019) Murder-suicide by Tanax® - Pathology, toxicology and veterinary analysis of a forensic case. Global Journal of Forensic Science & Medicine, 2 (1).

2018

Dann, L.M., McKerral, J.C., Smith, R.J., Tobe, S.S.ORCID: 0000-0002-4854-6278, Paterson, J.S., Seymour, J.R., Oliver, R.L. and Mitchell, J.G. (2018) Microbial micropatches within microbial hotspots. PloS one, 13 (5). e0197224.

Goodwin, C., Higgins, D., Tobe, S.S.ORCID: 0000-0002-4854-6278, Austin, J., Wotherspoon, A., Gahan, M.E. and McNevin, D. (2018) Singleplex quantitative real-time PCR for the assessment of human mitochondrial DNA quantity and quality. Forensic Science, Medicine and Pathology, 14 (1). pp. 70-75.

Smith, R.J., Paterson, J.S., Wallis, I., Launer, E., Banks, E.W., Bresciani, E., Cranswick, R.H., Tobe, S.S.ORCID: 0000-0002-4854-6278, Marri, Shashikanth, Goonan, Peter and Mitchell, James G (2018) Southern South Australian groundwater microbe diversity. FEMS Microbiology Ecology, 94 (10).

Conte, J., Potoczniak, M.J and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2018) Using synthetic oligonucleotides as standards in probe-based qPCR. BioTechniques, 64 (4). pp. 177-179.

Atkinson, K.E., Kitchener, A.C., Tobe, S.S.ORCID: 0000-0002-4854-6278 and O’Donoghue, P. (2018) An assessment of the genetic diversity of the founders of the European captive population of Asian lion (Panthera leo leo), using microsatellite markers and studbook analysis. Mammalian Biology, 88 . pp. 138-143.

2017

Franco, C.M.M., Adetutu, E.M., Le, H.X., Ballard, R.A., Araujo, R., Tobe, S.S.ORCID: 0000-0002-4854-6278, Paul, B., Mallya, S. and Satyamoorthy, K. (2017) Complete genome sequences of the endophytic streptomyces sp. strains LUP30 and LUP47B, isolated from lucerne plants. Genome Announcements, 5 (24). Article e00556-17.

Ben-Yosef, M., Zaada, D.S.Y., Dudaniec, R.Y., Pasternak, Z., Jurkevitch, E., Smith, R.J., Causton, C.E., Lincango, M.P., Tobe, S.S.ORCID: 0000-0002-4854-6278, Mitchell, J.G., Kleindorfer, S. and Yuval, B. (2017) Host-specific associations affect the microbiome of Philornis downsi, an introduced parasite to the Galápagos Islands. Molecular Ecology, 26 (18). pp. 4644-4656.

Lenehan, C.E., Tobe, S.S.ORCID: 0000-0002-4854-6278, Smith, R.J. and Popelka-Filcoff, R.S. (2017) Microbial composition analyses by 16S rRNA sequencing: A proof of concept approach to provenance determination of archaeological ochre. PLoS ONE, 12 (10).

Fesolovic, J. and Tobe, S.ORCID: 0000-0002-4854-6278 (2017) An elephant QPCR assay for forensic purposes. Forensic Science International, 277 (Supp. 1). p. 159.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Swaran, Y.C., Dennany, L., Sibbing, U., Schulze Johann, K., Welch, L. and Vennemann, M. (2017) A proof of principal study on the use of direct PCR of semen and spermatozoa and development of a differential isolation protocol for use in cases of alleged sexual assault. International Journal of Legal Medicine, 131 (1). pp. 87-94.

Kitchener, A.C., Breitenmoser-Würsten, C., Eizirik, E., Gentry, A., Werdelin, L., Wilting, A., Yamaguchi, N., Abramov, A.V., Christiansen, P., Driscoll, C.A., Duckworth, J.W., Johnson, W.E., Luo, S.J., Meijaard, E., O’Donoghue, P., Sanderson, J., Seymour, K., Bruford, M.W., Groves, C., Hoffmann, M., Nowell, K., Timmons, Z. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2017) A revised taxonomy of the Felidae. The final report of the Cat Classification Task Force of the IUCN/SSC Cat Specialist Group. Cat News (11).

Fesolovic, J. and Tobe, S.ORCID: 0000-0002-4854-6278 (2017) The use of synthetic oligonucleotide for creating a standard curve for QPCR assyas. Forensic Science International, 277 (Supp. 1). p. 159.

2016

Franco, C.M.M., Araujo, R., Adetutu, E., Tobe, S.S.ORCID: 0000-0002-4854-6278, Mallya, S., Paul, B. and Satyamoorthy, K. (2016) Complete genome sequences of the endophytic streptomyces strains EN16, EN23, and EN27, isolated from wheat plants. Genome Announcements, 4 (6). Article e01342-16.

Dann, L.M., Smith, R.J., Tobe, S.S.ORCID: 0000-0002-4854-6278, Paterson, J.S., Oliver, R.L. and Mitchell, J.G. (2016) Microscale distributions of freshwater planktonic viruses and prokaryotes are patchy and taxonomically distinct. Aquatic Microbial Ecology, 77 (2). pp. 65-77.

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2016) Optimization of diamond nucleic acid dye for quantitative PCR. BioTechniques, 61 (4).

Smith, R.J., Paterson, J.S., Launer, E., Tobe, S.S.ORCID: 0000-0002-4854-6278, Morello, E., Leijs, R., Marri, S. and Mitchell, J.G. (2016) Stygofauna enhance prokaryotic transport in groundwater ecosystems. Scientific Reports, 6 . Article number: 32738.

2015

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H. and Linacre, A. (2015) Duration of in situ fluorescent signals within hairs follicles. Forensic Science International: Genetics Supplement Series, 5 . e175-e176.

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H.J. and Linacre, A. (2015) Effect of nucleic acid binding dyes on DNA extraction, amplification, and STR typing. Electrophoresis, 36 (20). pp. 2561-2568.

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H. and Linacre, A. (2015) Finding DNA: Using fluorescent in situ detection. Forensic Science International: Genetics Supplement Series, 5 . e501-e502.

Ciavaglia, S.A., Tobe, S.S.ORCID: 0000-0002-4854-6278, Donnellan, S.C., Henry, J.M. and Linacre, A.M.T. (2015) Molecular identification of python species: Development and validation of a novel assay for forensic investigations. Forensic Science International: Genetics, 16 . pp. 64-70.

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H.J. and Linacre, A. (2015) Properties of nucleic acid staining dyes used in gel electrophoresis. Electrophoresis, 36 (6). pp. 941-944.

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H. and Linacre, A. (2015) Successful direct STR amplification of hair follicles after nuclear staining. Forensic Science International: Genetics Supplement Series, 5 . e65-e66.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Dennany, L. and Vennemann, M. (2015) An assessment of the subjectivity of sperm scoring. Forensic Science International, 251 . pp. 83-86.

Ciavaglia, S., Donnellan, S., Tobe, S.ORCID: 0000-0002-4854-6278, Henry, J. and Linacre, A. (2015) A novel forensic DNA profiling technique for protected species. Forensic Science International: Genetics Supplement Series, 5 . e258-e260.

2014

Pearson, S.K., Tobe, S.S.ORCID: 0000-0002-4854-6278, Fusco, D.A., Bull, C.M. and Gardner, M.G. (2014) Piles of scats for piles of DNA: deriving DNA of lizards from their faeces. Australian Journal of Zoology, 62 (6). pp. 507-514.

Vennemann, M., Scott, G., Curran, L., Bittner, F. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2014) Sensitivity and specificity of presumptive tests for blood, saliva and semen. Forensic Science, Medicine, and Pathology, 10 (1). pp. 69-75.

2013

Haines, A.M., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kobus, H. and Linacre, A. (2013) Detection of DNA within fingermarks. Forensic Science International: Genetics Supplement Series, 4 (1). e290-e291.

Ramón-Laca, A., Linacre, A.M.T., Gleeson, D.M. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2013) Identification multiplex assay of 19 terrestrial mammal species present in New Zealand. Electrophoresis, 34 (24). pp. 3370-3376.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Bailey, S., Govan, J. and Welch, L.A. (2013) Recovery of human DNA profiles from poached deer remains part 2: Improved recovery protocol without the need for LCN analysis. Science & Justice, 53 (1). pp. 23-27.

Linacre, A. and Tobe, S.ORCID: 0000-0002-4854-6278 (2013) Wildlife DNA Analysis: Applications in Forensic Science. Wiley-Blackwell.

Linacre, A.M.T. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2013) Wildlife DNA Analysis: Applications in Forensic Science. Wiley-Blackwell.

2012

Kitpipit, T., Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2012) Erratum to: The complete mitochondrial genome analysis of the tiger (Panthera tigris). Molecular Biology Reports, 39 (10). p. 9841.

Kitpipit, T., Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2012) The complete mitochondrial genome analysis of the tiger (Panthera tigris). Molecular Biology Reports, 39 (5). pp. 5745-5754.

Kitpipit, T., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kitchener, A.C., Gill, P. and Linacre, A. (2012) The development and validation of a single SNaPshot multiplex for tiger species and subspecies identification—Implications for forensic purposes. Forensic Science International: Genetics, 6 (2). pp. 250-257.

2011

Tobe, S.S.ORCID: 0000-0002-4854-6278, Kitchener, A.C. and Linacre, A. (2011) Assigning confidence to sequence comparisons for species identification: A detailed comparison of the cytochrome b and cytochrome oxidase subunit I mitochondrial genes. Forensic Science International: Genetics Supplement Series, 3 (1). e246-e247.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Thatcher, R., Gracie, K. and Watson, N. (2011) Molecular analysis of botanical evidence by DNA thermal dissociation temperature. Forensic Science International: Genetics Supplement Series, 3 (1). e257-e258.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Govan, J. and Welch, L.A. (2011) Recovery of human DNA profiles from poached deer remains: A feasibility study. Science & Justice, 51 (4). pp. 190-195.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Govan, J. and Welch, L.A. (2011) Tackling poaching: Recovery of human DNA profiles from deer remains. Forensic Science International: Genetics Supplement Series, 3 (1). e265-e266.

Kitpipit, T., Tobe, S.S.ORCID: 0000-0002-4854-6278, Kitchener, A.C., Gill, P. and Linacre, A. (2011) Where does this tiger come from? — A robust molecular technique for simultaneous identification of endangered species and subspecies. Forensic Science International: Genetics Supplement Series, 3 (1). e532-e533.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2011) A new assay for identifying endangered species in Traditional East Asian Medicine. Forensic Science International: Genetics Supplement Series, 3 (1). e232-e233.

Linacre, A. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2011) An overview to the investigative approach to species testing in wildlife forensic science. Investigative Genetics, 2 (1).

2010

Tobe, S.S.ORCID: 0000-0002-4854-6278 (2010) Book review: Forensic Science Handbook Volume III, Richard Saferstein (Ed), 2nd edition, Prentice Hall, (Date), 534 pages, ISBN 978-0-13-220715-7. Science & Justice, 50 (4). pp. 210-211.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2010) DNA typing in wildlife crime: Recent developments in species identification. Forensic Science, Medicine, and Pathology, 6 (3). pp. 195-206.

Linacre, A., Pekarek, V., Swaran, Y.C. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2010) Generation of DNA profiles from fabrics without DNA extraction. Forensic Science International: Genetics, 4 (2). pp. 137-141.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Kitchener, A.C. and Linacre, A.M.T. (2010) Reconstructing Mammalian Phylogenies: A Detailed Comparison of the Cytochrome b and Cytochrome Oxidase Subunit I Mitochondrial Genes. PLoS ONE, 5 (11).

2009

Tobe, S.S.ORCID: 0000-0002-4854-6278 (2009) Book review: Bayesian Networks: A Practical Guide to Applications, Oliver Pourret, Patrick Naïm and Bruce Marcot (Eds.), John Wiley and Sons, Ltd., (Date), 430 pages, ISBN 978-0-470-06030-8. Science & Justice, 49 (2). pp. 150-151.

Tobe, S.ORCID: 0000-0002-4854-6278 and Daeid, N. (2009) Commentary on: Comparison of presumptive blood test kits including Hexagon OBTI. Journal of Forensic Sciences, 54 (1). p. 239.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Kitchener, A. and Linacre, A. (2009) Cytochrome b or cytochrome c oxidase subunit I for mammalian species identification—An answer to the debate. Forensic Science International: Genetics Supplement Series, 2 (1). pp. 306-307.

Tobe, S.S.ORCID: 0000-0002-4854-6278 (2009) Determining the Geographic Origin of Animal Samples. In: Linacre, A., (ed.) Forensic Science in Wildlife Investigations. CRC Press, Informa, pp. 127-156.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2009) Identifying endangered species from degraded mixtures at low levels. Forensic Science International: Genetics Supplement Series, 2 (1). pp. 304-305.

Linacre, A. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2009) Species Identification Using DNA Loci. In: Linacre, A., (ed.) Forensic Science in Wildlife Investigations. CRC Press, pp. 61-94.

Kitpipit, T., Linacre, A. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2009) Tiger species identification based on molecular approach. Forensic Science International: Genetics Supplement Series, 2 (1). pp. 310-312.

Boonseub, S., Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A.M.T. (2009) The use of mitochondrial DNA genes to identify closely related avian species. Forensic Science International: Genetics Supplement Series, 2 (1). pp. 275-277.

2008

Linacre, A. and Tobe, S.S.ORCID: 0000-0002-4854-6278 (2008) On the trial of tigers–tracking tiger in Traditional East Asian Medicine. Forensic Science International: Genetics Supplement Series, 1 (1). pp. 603-604.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2008) Quantification of trace amounts of human and non-human mitochondrial DNA (mtDNA) using SYBR Green and real time PCR. Forensic Science International: Genetics Supplement Series, 1 (1). pp. 71-73.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2008) A method to identify a large number of mammalian species in the UK from trace samples and mixtures without the use of sequencing. Forensic Science International: Genetics Supplement Series, 1 (1). pp. 625-627.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A.M.T. (2008) A multiplex assay to identify 18 European mammal species from mixtures using the mitochondrial cytochromeb gene. Electrophoresis, 29 (2). pp. 340-347.

Tobe, S.S.ORCID: 0000-0002-4854-6278 and Linacre, A.M.T. (2008) A technique for the quantification of human and non-human mammalian mitochondrial DNA copy number in forensic and other mixtures. Forensic Science International: Genetics, 2 (4). pp. 249-256.

Tobe, Shanan S.ORCID: 0000-0002-4854-6278 (2008) A test to identify mammalian species present in forensic trace samples and mixtures using the mitochondrial cytochrome b gene. PhD thesis, University of Strathclyde .

2007

Tobe, S.S.ORCID: 0000-0002-4854-6278 (2007) Book review: PCR Primer Design, Anton Yuryev (Ed), 1 edition, Humana Press, (Aug 2 2007), 367 pages, ISBN-10: 158829725X. Science & Justice, 47 (4). p. 173.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Watson, N. and Daéid, N.N. (2007) Evaluation of six presumptive tests for blood, their specificity, sensitivity, and effect on high molecular-weight DNA. Journal of Forensic Sciences, 52 (1). pp. 102-109.

Tobe, S.ORCID: 0000-0002-4854-6278 and Linacre, A. (2007) Species identification of human and deer from mixed biological material. Forensic Science International, 169 (2-3). pp. 278-279.

Tobe, S.S.ORCID: 0000-0002-4854-6278, Reid, S.J. and Linacre, A.M.T. (2007) Successful DNA typing of a drug positive urine sample from a race horse. Forensic Science International, 173 (1). pp. 85-86.

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