Publications: Tan, Cong

2021

Jia, Y., Westcott, S., He, T.ORCID: 0000-0002-0924-3637, McFawn, L.A., Angessa, T., Hill, C.ORCID: 0000-0002-6754-5553, Tan, C., Zhang, X., Zhou, G. and Li, C. (2021) Genome-wide association studies reveal QTL hotspots for grain brightness and black point traits in barley. The Crop Journal, 9 (1). pp. 154-167.

He, T.ORCID: 0000-0002-0924-3637, Angessa, T.T., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhang, X-Q, Chen, K., Luo, H., Wang, Y., Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2021) Genomic structural equation modelling provides a whole-system approach for the future crop breeding. Theoretical and Applied Genetics, 134 . pp. 2875-2889.

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X‐Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2021) A global barley panel revealing genomic signatures of breeding in modern Australian cultivars. The Plant Journal . Early View.

2020

Tan, C., Chapman, B.ORCID: 0000-0001-7518-6645, Wang, P., Zhang, Q., Zhou, G., Zhang, X-Q, Barrero, R.A., Bellgard, M.I. and Li, C. (2020) BarleyVarDB: A database of barley genomic variation. Database, 2020 . baaa091.

Wang, Y., Xu, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Zhou, Y., Wallwork, H., Zhou, G., Broughton, S., Zhang, X-Q, Tan, C., Westcott, S., Moody, D., Sun, D., Loughman, R., Zhang, W. and Li, C. (2020) Fine mapping QSc.VR4, an effective and stable scald resistance locus in barley (Hordeum vulgare L.), to a 0.38-Mb region enriched with LRR-RLK and GLP genes. Theoretical and Applied Genetics .

Jia, Y., Selva, C., Zhang, Y., Li, B., McFawn, L.A., Broughton, S., Zhang, X., Westcott, S., Wang, P., Tan, C., Angessa, T., Xu, Y., Whitford, R. and Li, C. (2020) Uncovering the evolutionary origin of blue anthocyanins in cereal grains. The Plant Journal, 101 (5). pp. 1057-1074.

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., Ens, J., Zhang, X-Q, Angessa, T.T., Zhou, G., Tan, C., Hill, C.ORCID: 0000-0002-6754-5553, Wang, P., Schreiber, M., Boston, L.B., Plott, C., Jenkins, J., Guo, Y., Fiebig, A., Budak, H., Xu, D., Zhang, J., Wang, C., Grimwood, J., Schmutz, J., Guo, G., Zhang, G., Mochida, K., Hirayama, T., Sato, K., Chalmers, K.J., Langridge, P., Waugh, R., Pozniak, C.J., Scholz, U., Mayer, K.F.X., Spannagl, M., Li, C., Mascher, M. and Stein, N. (2020) The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588 . pp. 284-289.

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2020) A global barley panel revealing genomic signatures of breeding in modern cultivars. BioRxiv .

2019

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Alternative splicing of a barley gene results in an excess-tillering and semi-dwarf mutant. Theoretical and Applied Genetics . In Press.

Tan, C., Zhang, X-Q, Wang, Y., Wu, D., Bellgard, M.I., Xu, Y., Shu, X., Zhou, G. and Li, C. (2019) Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq. BMC Genomics, 20 (1).

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Correction to: Alternative splicing of a barley gene results in an excess‑tillering and semi‑dwarf mutant. Theoretical and Applied Genetics . In Press.

Long, Z., Jia, Y., Tan, C., Zhang, X-Q, Angessa, T., Broughton, S., Westcott, S., Dai, F., Zhang, G., Sun, D., Xu, Y. and Li, C. (2019) Genetic mapping and evolutionary analyses of the black grain trait in barley. Frontiers in Plant Science, 9 .

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., McFawn, L-A, Wong, D., Tibbits, J., Zhang, X-Q, Forrest, K., Moody, D., Telfer, P., Westcott, S., Diepeveen, D.ORCID: 0000-0002-1535-8019, Xu, Y., Tan, C., Hayden, M. and Li, C. (2019) Hybridisation-based target enrichment of phenology genes to dissect the genetic basis of yield and adaptation in barley. Plant Biotechnology Journal, 17 (5). pp. 932-944.

2018

Tan, Cong (2018) Exploring genomic diversity in wild and cultivated barley using high throughput DNA sequencing technology. PhD thesis, Murdoch University.

Prade, V.M., Gundlach, H., Twardziok, S., Chapman, B., Tan, C., Langridge, P., Schulman, A.H., Stein, N., Waugh, R., Zhang, G., Platzer, M., Li, C., Spannagl, M. and Mayer, K.F.X. (2018) The pseudogenes of barley. The Plant Journal, 93 (3). pp. 502-514.

2017

Wang, R., Yang, F., Zhang, X-Q, Wu, D., Tan, C., Westcott, S., Broughton, S., Li, C., Zhang, W. and Xu, Y. (2017) Characterization of a Thermo-Inducible Chlorophyll-deficient mutant in barley. Frontiers in Plant Science, 8 .

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q, Barrero, R.A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G.J., Kersey, P., Clark, M.D., Caccamo, M., Schulman, A.H., Platzer, M., Close, T.J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. and Mascher, M. (2017) Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4 . Article number: 170044.

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P.E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q, Zhang, Q., Barrero, R.A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G.J., Clark, M.D., Caccamo, M., Schulman, A.H., Mayer, K.F.X., Platzer, M., Close, T.J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. and Stein, N. (2017) A chromosome conformation capture ordered sequence of the barley genome. Nature, 544 (7651). pp. 427-433.

2016

Zhang, Q., Zhang, X-Q, Wang, S., Tan, C., Zhou, G. and Li, C. (2016) Involvement of alternative splicing in barley seed germination. PLoS ONE, 11 (3). Article e0152824.

Jia, Q., Tan, C., Wang, J., Zhang, X-Q, Zhu, J., Luo, H., Yang, J., Westcott, S., Broughton, S, Moody, D. and Li, C. (2016) Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley. BMC Genomics, 17 (1).

2015

Yang, H., Jian, J., Li, X., Renshaw, D., Clements, J., Sweetingham, M.W., Tan, C. and Li, C. (2015) Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius). BMC Genomics, 16 (1).

Zhou, G., Zhang, Q., Zhang, X-Q, Tan, C. and Li, C. (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PloS one, 10 (7). e0133161.

Zhou, G., Zhang, Q., Tan, C., Zhang, X-Q and Li, C. (2015) Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map. BMC Genomics, 16 (1).