Publications: Tan, Cong

Journal Article

Tan, C., Chapman, B.ORCID: 0000-0001-7518-6645, Wang, P., Zhang, Q., Zhou, G., Zhang, X-Q, Barrero, R.A., Bellgard, M.I. and Li, C. (2020) BarleyVarDB: A database of barley genomic variation. Database, 2020 . baaa091.

Wang, Y., Xu, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Zhou, Y., Wallwork, H., Zhou, G., Broughton, S., Zhang, X-Q, Tan, C., Westcott, S., Moody, D., Sun, D., Loughman, R., Zhang, W. and Li, C. (2020) Fine mapping QSc.VR4, an effective and stable scald resistance locus in barley (Hordeum vulgare L.), to a 0.38-Mb region enriched with LRR-RLK and GLP genes. Theoretical and Applied Genetics .

Jia, Y., Westcott, S., He, T., McFawn, L.A., Angessa, T., Hill, C.ORCID: 0000-0002-6754-5553, Tan, C., Zhang, X., Zhou, G. and Li, C. (2020) Genome-wide association studies reveal QTL hotspots for grain brightness and black point traits in barley. The Crop Journal . In Press.

Jia, Y., Selva, C., Zhang, Y., Li, B., McFawn, L.A., Broughton, S., Zhang, X., Westcott, S., Wang, P., Tan, C., Angessa, T., Xu, Y., Whitford, R. and Li, C. (2020) Uncovering the evolutionary origin of blue anthocyanins in cereal grains. The Plant Journal, 101 (5). pp. 1057-1074.

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., Ens, J., Zhang, X-Q, Angessa, T.T., Zhou, G., Tan, C., Hill, C.ORCID: 0000-0002-6754-5553, Wang, P., Schreiber, M., Boston, L.B., Plott, C., Jenkins, J., Guo, Y., Fiebig, A., Budak, H., Xu, D., Zhang, J., Wang, C., Grimwood, J., Schmutz, J., Guo, G., Zhang, G., Mochida, K., Hirayama, T., Sato, K., Chalmers, K.J., Langridge, P., Waugh, R., Pozniak, C.J., Scholz, U., Mayer, K.F.X., Spannagl, M., Li, C., Mascher, M. and Stein, N. (2020) The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588 . pp. 284-289.

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Alternative splicing of a barley gene results in an excess-tillering and semi-dwarf mutant. Theoretical and Applied Genetics . In Press.

Tan, C., Zhang, X-Q, Wang, Y., Wu, D., Bellgard, M.I., Xu, Y., Shu, X., Zhou, G. and Li, C. (2019) Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq. BMC Genomics, 20 (1).

Hua, W., Tan, C., Xie, J., Zhu, J., Shang, Y., Yang, J., Zhang, X-Q, Wu, X., Wang, J. and Li, C. (2019) Correction to: Alternative splicing of a barley gene results in an excess‑tillering and semi‑dwarf mutant. Theoretical and Applied Genetics . In Press.

Long, Z., Jia, Y., Tan, C., Zhang, X-Q, Angessa, T., Broughton, S., Westcott, S., Dai, F., Zhang, G., Sun, D., Xu, Y. and Li, C. (2019) Genetic mapping and evolutionary analyses of the black grain trait in barley. Frontiers in Plant Science, 9 .

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., McFawn, L-A, Wong, D., Tibbits, J., Zhang, X-Q, Forrest, K., Moody, D., Telfer, P., Westcott, S., Diepeveen, D.ORCID: 0000-0002-1535-8019, Xu, Y., Tan, C., Hayden, M. and Li, C. (2018) Hybridisation-based target enrichment of phenology genes to dissect the genetic basis of yield and adaptation in barley. Plant Biotechnology Journal, 17 (5). pp. 932-944.

Prade, V.M., Gundlach, H., Twardziok, S., Chapman, B., Tan, C., Langridge, P., Schulman, A.H., Stein, N., Waugh, R., Zhang, G., Platzer, M., Li, C., Spannagl, M. and Mayer, K.F.X. (2018) The pseudogenes of barley. The Plant Journal, 93 (3). pp. 502-514.

Wang, R., Yang, F., Zhang, X-Q, Wu, D., Tan, C., Westcott, S., Broughton, S., Li, C., Zhang, W. and Xu, Y. (2017) Characterization of a Thermo-Inducible Chlorophyll-deficient mutant in barley. Frontiers in Plant Science, 8 .

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q, Barrero, R.A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G.J., Kersey, P., Clark, M.D., Caccamo, M., Schulman, A.H., Platzer, M., Close, T.J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. and Mascher, M. (2017) Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4 . Article number: 170044.

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P.E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q, Zhang, Q., Barrero, R.A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G.J., Clark, M.D., Caccamo, M., Schulman, A.H., Mayer, K.F.X., Platzer, M., Close, T.J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. and Stein, N. (2017) A chromosome conformation capture ordered sequence of the barley genome. Nature, 544 (7651). pp. 427-433.

Zhang, Q., Zhang, X-Q, Wang, S., Tan, C., Zhou, G. and Li, C. (2016) Involvement of alternative splicing in barley seed germination. PLoS ONE, 11 (3). Article e0152824.

Jia, Q., Tan, C., Wang, J., Zhang, X-Q, Zhu, J., Luo, H., Yang, J., Westcott, S., Broughton, S, Moody, D. and Li, C. (2016) Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley. BMC Genomics, 17 (1).

Yang, H., Jian, J., Li, X., Renshaw, D., Clements, J., Sweetingham, M.W., Tan, C. and Li, C. (2015) Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius). BMC Genomics, 16 (1).

Zhou, G., Zhang, Q., Zhang, X-Q, Tan, C. and Li, C. (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PloS one, 10 (7). e0133161.

Zhou, G., Zhang, Q., Tan, C., Zhang, X-Q and Li, C. (2015) Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map. BMC Genomics, 16 (1).

Non-refereed Article

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S. and Li, C. (2020) A global barley panel revealing genomic signatures of breeding in modern cultivars. BioRxiv .

Thesis

Tan, Cong (2018) Exploring genomic diversity in wild and cultivated barley using high throughput DNA sequencing technology. PhD thesis, Murdoch University.