Publications: Schibeci, David

Journal Article

Bellgard, M.I., Moolhuijzen, P.M., Guerrero, F.D., Schibeci, D., Rodriguez-Valle, M., Peterson, D.G., Dowd, S.E., Barrero, R., Hunter, A., Miller, R.J. and Lew-Tabor, A.E. (2011) CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus. International Journal for Parasitology, 42 (2). pp. 161-169.

Wanchanthuek, P., Bellgard, M., La, T., Ryan, K., Moolhuijzen, P., Chapman, B., Black, M.L., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J.ORCID: 0000-0002-7729-0427 (2010) The complete genome sequence of the pathogenic intestinal spirochete Brachyspira pilosicoli and comparison with other Brachyspira genomes. PLoS ONE, 5 (7). pp. 1-16.

Moolhuijzen, P., Kulski, J.K., Dunn, D.S., Schibeci, D., Barrero, R., Gojobori, T. and Bellgard, M. (2010) The transcript repeat element: the human Alu sequence as a component of gene networks influencing cancer. Functional & Integrative Genomics, 10 (3). pp. 307-319.

Bellgard, M., Wanchanthuek, P., La, T., Ryan, K., Moolhuijzen, P., Albertyn, Z., Shaban, B., Motro, Y., Dunn, D.S., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J.ORCID: 0000-0002-7729-0427 (2009) Genome sequence of the pathogenic intestinal spirochete Brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. PLoS ONE, 4 (3). e4641.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Appels, R. and Bellgard, M. (2006) Erratum: LegumeDB bioinformatics resource: comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species. Genome, 49 (9). pp. 1206-1207.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Appels, R. and Bellgard, M. (2006) LegumeDB1 bioinformatics resource: Comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species. Genome, 49 (6). pp. 689-699.

Li, C., Ni, P., Francki, M., Hunter, A., Zhang, Y., Schibeci, D., Li, H., Tarr, A., Wang, J., Cakir, M., Yu, J., Bellgard, M., Lance, R. and Appels, R. (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Functional & Integrative Genomics, 4 (2). pp. 84-93.

Bellgard, M., Schibeci, D., Trifonov, E. and Gojobori, T. (2001) Early detection of G+C differences in bacterial species inferred from the comparative analysis of the two completely sequenced helicobacter pylori strains. Journal of Molecular Evolution, 53 (4-5). pp. 465-468.

Conference Paper

Broomhall, M., Chedzey, H., Garcia, R., Lynch, M., Fearns, P., King, E., Wang, Z., Smith, G. and Schibeci, D. (2011) Ensemble dust detection techniques utilising a web-based workflow environment linked to a high performance computing system. In: 34th International Symposium on Remote Sensing of Environment (ISRSE2011): The GEOSS Era: Towards Operational Environmental Monitoring, 10 - 15 April 2011, Sydney Convention & Exhibition Centre, N.S.W

Wang, Z., King, E., Smith, G., Bellgard, M., Broomhall, M., Chedzey, H., Fearns, P., Garcia, R., Hunter, A., Lynch, M. and Schibeci, D. (2011) RS-YABI: A workflow system for Remote Sensing Processing in AusCover. In: MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty, 12 - 16 December, Perth, Western Australia pp. 1167-1173.

Fearns, P., Bellgard, M., Broomhall, M., Chedzey, H., Garcia, R., Hunter, A., King, E., Lynch, M., Schibeci, D. and Smith, G. (2011) Web-based processing of remote sensing data in a workflows environment. In: 34th International Symposium on Remote Sensing of Environment (ISRSE2011): The GEOSS Era: Towards Operational Environmental Monitoring, 10 - 15 April 2011, Sydney Convention & Exhibition Centre, N.S.W

Bellgard, M., Moolhuijzen, P., Guerrero, F.D., Appels, R., Schibeci, D., Rodriguez-Valle, M., Barrero, R., Hunter, A. and Lew-Tabor, A. (2011) A new web-based genomics resource for bioinformatics analysis of Rhipicephalus (Boophilus) microplus: CattleTickBase. In: Ticks and Tick-borne Pathogens International Conference (TTP-7) 2011, 28 August - 2 September 2011, Zaragoza, Spain

Guerrero, F.D., Moolhuijzen, P., Peterson, D.G., Bellgard, M.I., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Nene, V.M. and Lew-Tabor, A.E. (2010) Cot filtration approach for advancing genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. In: Entomology 2010: ESA 58th Annual Meeting, 12 - 15 December 2010, San Diego, CA

Bellgard, M., Guerrero, F.D., Moolhuijzen, P., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Gondro, C. and Lew-Tabor, A.E. (2010) Toward a genome sequence for Rhipicephalus (Boophilus) microplus: Cattle tick base available resources for the research community. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August, Melbourne, Australia

Hunter, A., Schibeci, D., Hiew, H.L. and Bellgard, M. (2005) Grendel: A bioinformatics web service-based architecture for accessing HPC resources. In: 3rd Australasian Workshop on Grid Computing and e-Research, AusGrid 2005 and 3rd Australasian Information Security Workshop, AISW 2005, 31 January - 1 February, Newcastle, Australia

Moolhuijzen, P., Cakir, M., Madsen, L., Li, D., Hunter, A., Schibeci, D., Francki, M., Appels, R., Sandal, N. and Bellgard, M. (2004) Detailed comparative genomics and novel cross-species marker identification in Lupin and pasture legume species: Application of the legumeDB bioinformatics resources. In: Plant Genomics European Meeting, 22 - 25 September 2004, Lyon, France

Hunter, A., Schibeci, D., Hiew, H.L. and Bellgard, M. (2004) GRID-enabled bioinformatics applications for comparative genomic analysis at the CBBC. In: 2004 IEEE International Conference on Cluster Computing, ICCC 2004, 20 - 23 September, San Diego, CA, USA p. 486.

Cakir, M., Appels, R., Hunter, A., Schibeci, D., Li, C. and Bellgard, M. (2004) A consensus molecular genetic map of barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 144-148.

Dwyer, G., Loo, H.P., Schibeci, D., Hunter, A., Siddique, K., Khan, T., Bellgard, M. and Jones, M.ORCID: 0000-0001-5002-0227 (2002) Molecular and bioinformatics approaches for chickpea (Cicer arietinum L.) improvement. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Carter, K., Schibeci, D. and Bellgard, M. (2001) WWW issues for conducting sophisticated Bioinformatics analysis. In: AusWeb 01: The Seventh Australian World Wide Web Conference, 21 - 25 April 2001, Coffs Harbour, NSW

Hiew, H.L., Bellgard, M. and Schibeci, D. (1999) Visualising the evolutionary dynamics of molecular data using self organising feature maps. In: Third Australia-Japan Joint Workshop on Intelligent and Evolutionary Systems, 23 - 25 November 1999, Canberra, Australia

Bellgard, M., Schibeci, D. and Hiew, H.L. (1999) An information system for whole genome data. In: 2nd Western Australian Workshop on Information Systems Research (WAWISR), 27th November 1999, Perth, W.A

Conference Item

Moolhuijzen, P., Ryan, K., Lew-Tabor, A., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Bioinformatics resource to capture, integrate and analyse diverse data types. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Appels, R., Lew-Tabor, A., Rodriguez-Valle, M., Morgan, J., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) De-novo sequence assembly and characterization of the complex genome of five BACS from Rhipicephalus microplus. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Lew-Tabor, A., Rodriguez-Valle, M., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Transcriptome wide high throughput bioninformatics pipeline for vaccine candidate identification. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Hunter, A., Macgregor, A., Takayama, N., Smith, C., Wellington, C., Hammond, B., Albertyn, Z., Schibeci, D. and Bellgard, M. (2008) YABI: A rich internet application for simplifying -omics workflow creation, customisation and data analysis. In: Cambridge Healthtech Institute 2nd Annual Next Generation Sequencing: Platforms Applications and Case Studies, 23 - 24 April 2008, San Diego, CA.

Book Chapter

Schibeci, D., Potter, R., Wathen-Dunn, K., Jones, M.ORCID: 0000-0001-5002-0227 and Bellgard, M. (2001) Applying artificial neural networks to the classification of wheat varieties processed via MALDI-TOF mass spectrometry. In: Mastorakis, N.E., (ed.) Advances in Neural Networks and Applications. World Scientific and Engineering Society Press, pp. 262-267.

Working Paper

Bellgard, M., Schibeci, D. and Trifonov, E. (2001) Gap mapping : A new paradigm for aligning two sequences. Murdoch University. Division of Business, Information Technology and Law, Perth, Western Australia.

Schibeci, D. and Bellgard, M. (2001) cBLAST : a distributed version of BLAST using PVM. Murdoch University. School of Information Technology, Perth, Western Australia.