Publications: Nicholson, Jeremy

2022

Loo, R.L., Chan, Q., Nicholson, J.K. and Holmes, E. (2022) Balancing the Equation: A Natural History of Trimethylamine and Trimethylamine-N-oxide. Journal of Proteome Research, 21 (3). pp. 560-589.

Brignardello, J., Fountana, S., Posma, J.M., Chambers, E.S., Nicholson, J.K., Wist, J., Frost, G., Garcia-Perez, I. and Holmes, E. (2022) Characterization of diet-dependent temporal changes in circulating short-chain fatty acid concentrations: A randomized crossover dietary trial. The American Journal of Clinical Nutrition .

Letertre, M.P.M., Bhatt, A.P., Harvey, M., Nicholson, J.K., Wilson, I.D., Redinbo, M.R. and Swann, J.R. (2022) Characterizing the metabolic effects of the selective inhibition of gut microbial β-glucuronidases in mice. Scientific Reports, 12 (1). Art. 17435.

Nitschke, P., Lodge, S., Hall, D., Schaefer, H., Spraul, M., Embade, N., Millet, O., Holmes, E., Wist, J. and Nicholson, J.K. (2022) Direct low field J-edited diffusional proton NMR spectroscopic measurement of COVID-19 inflammatory biomarkers in human serum. The Analyst, 147 (19). pp. 4213-4221.

Yau, A., Fear, M.W., Gray, N., Ryan, M., Holmes, E., Nicholson, J.K., Whiley, L.ORCID: 0000-0002-9088-4799 and Wood, F.M. (2022) Enhancing the accuracy of surgical wound excision following burns trauma via application of Rapid Evaporative IonisationMass Spectrometry (REIMS). Burns, 48 (7). pp. 1574-1583.

Masuda, R., Lodge, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Lawler, N., Nitschke, P., Bong, S-H, Kimhofer, T., Loo, R.L., Boughton, B.ORCID: 0000-0001-6342-9814, Zeng, A.X., Hall, D., Schaefer, H., Spraul, M., Dwivedi, G., Yeap, B.B., Diercks, T., Bernardo-Seisdedos, G., Mato, J.M., Lindon, J.C., Holmes, E., Millet, O., Wist, J. and Nicholson, J.K. (2022) Exploration of human serum lipoprotein supramolecular phospholipids using statistical heterospectroscopy in n-Dimensions (SHY-n): Identification of potential cardiovascular risk biomarkers related to SARS-CoV-2 infection. Analytical Chemistry, 94 (10). pp. 4426-4436.

Yeap, B.B., Marriott, R.J., Manning, L., Dwivedi, G., Hankey, G.J., Wu, F.C.W., Nicholson, J.K. and Murray, K. (2022) Higher premorbid serum testosterone predicts COVID-19-related mortality risk in men. European Journal of Endocrinology, 187 (1). pp. 159-170.

Mujagic, Z., Kasapi, M., Jonkers, D.M., Garcia-Perez, I., Vork, L., Weerts, Z.Z.R.M., Serrano-Contreras, J.I., Zhernakova, A., Kurilshikov, A., Scotcher, J., Holmes, E., Wijmenga, C., Keszthelyi, D., Nicholson, J.K., Posma, J.M and Masclee, A.A. (2022) Integrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome. Gut Microbes, 14 (1). Art. e2063016.

Nitschke, P., Lodge, S., Kimhofer, T., Masuda, R., Bong, S-H, Hall, D., Schäfer, H., Spraul, M., Pompe, N., Diercks, T., Bernardo-Seisdedos, G., Mato, J.M., Millet, O., Susic, D., Henry, A., El-Omar, E.M., Holmes, E., Lindon, J.C., Nicholson, J.K. and Wist, J. (2022) J-Edited diffusional proton nuclear magnetic resonance spectroscopic measurement of glycoprotein and supramolecular phospholipid biomarkers of inflammation in human serum. Analytical Chemistry, 94 (2). pp. 1333-1341.

Mitsopoulos, N. and Nicholson, J.K. (2022) Long Covid. [Radio Broadcast] [Creative Output]

Nicholson, J.K., Jia, W., Lasky-Su, J.A. and Barbas, C. (2022) Metabolic modeling in health and disease. Journal of Proteome Research, 21 (3). p. 559.

Sanabria, J., Egan, S.ORCID: 0000-0003-4395-4069, Masuda, R., Lee, A.J., Gibson, G.R., Nicholson, J.K., Wist, J. and Holmes, E. (2022) Overview of the nomenclature and network of contributors to the development of bioreactors for human gut simulation using bibliometric tools: A fragmented landscape. Journal of Agricultural and Food Chemistry, 70 (37). pp. 11458-11467.

Begum, S., Johnson, B.Z., Morillon, A-C, Yang, R.ORCID: 0000-0003-2563-2015, Bong, S-H, Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Fear, V.S., Cuttle, L., Holland, A.J.A., Nicholson, J.K., Wood, F.M., Fear, M.W. and Holmes, E. (2022) Systemic long-term metabolic effects of acute non-severe paediatric burn injury. Scientific Reports, 12 (1). Art. 13043.

2021

Posma, J.M., Garcia-Perez, I., Frost, G., Aljuraiban, G.S., Chan, Q., Van Horn, L., Daviglus, M., Stamler, J., Holmes, E., Elliott, P. and Nicholson, J.K. (2021) Author Correction: Nutriome–metabolome relationships provide insights into dietary intake and metabolism. Nature Food .

Gray, N., Lawler, N., Zeng, A., Ryan, M., Bong, S-H, Boughton, B.ORCID: 0000-0001-6342-9814, Bizkarguenaga, M., Bruzzone, C., Embade, N., Wist, J., Holmes, E., Millet, O., Nicholson, J. and Whiley, L.ORCID: 0000-0002-9088-4799 (2021) Diagnostic potential of the plasma lipidome in infectious disease: Application to acute SARS-CoV-2 infection. Metabolites, 11 (7). Article 467.

Koller, K.R., Wilson, A., Normolle, D.P., Nicholson, J.K., Li, J.V., Kinross, J., Lee, F.R., Flanagan, C.A., Merculieff, Z.T., Iyer, P., Lammers, D.L., Thomas, T.K. and O'Keefe, S.J.D. (2021) Dietary fibre to reduce colon cancer risk in Alaska Native people: the Alaska FIRST randomised clinical trial protocol. BMJ Open, 11 (8). Art. e047162.

Lodge, S., Nitschke, P., Kimhofer, T., Wist, J., Bong, S-H, Loo, R.L., Masuda, R., Begum, S., Richards, T., Lindon, J.C., Bermel, W., Reinsperger, T., Schaefer, H., Spraul, M., Holmes, E. and Nicholson, J.K. (2021) Diffusion and relaxation edited Proton NMR Spectroscopy of plasma reveals a High-Fidelity supramolecular biomarker signature of SARS-CoV-2 infection. Analytical Chemistry, 93 (8). pp. 3976-3986.

Holmes, E., Wist, J., Masuda, R., Lodge, S., Nitschke, P., Kimhofer, T., Loo, R.L., Begum, S., Boughton, B.ORCID: 0000-0001-6342-9814, Yang, R.ORCID: 0000-0003-2563-2015, Morillon, A-C, Chin, S-T, Hall, D., Ryan, M., Bong, S-H, Gay, M., Edgar, D.W., Lindon, J.C., Richards, T., Yeap, B.B., Pettersson, S., Spraul, M., Schaefer, H., Lawler, N.G., Gray, N., Whiley, L.ORCID: 0000-0002-9088-4799 and Nicholson, J.K. (2021) Incomplete systemic recovery and metabolic phenoreversion in Post-Acute-Phase nonhospitalized COVID-19 Patients: Implications for assessment of Post-Acute COVID-19 syndrome. Journal of Proteome Research, 20 (6). pp. 3315-3329.

Mujagic, Z., Kasapi, M., Jonkers, D.M., Garcia-Perez, I., Weerts, Z.Z.R.M., Vork, L., Serrano-Contreras, J-I, Zhernakova, A., Kurilshikov, A., Holmes, E., Keszthelyi, D., Nicholson, J.K., Posma, J.M., Masclee, A.A. and Wijmenga, C. (2021) Integrated faecal microbiome-metabolome signatures reflect stress and serotonin metabolism in Irritable Bowel Syndrome. Neurogastroenterology and motility, 33 (Supp. 2). Art. 745290.

Masuda, R., Lodge, S., Nitschke, P., Spraul, M., Schaefer, H., Bong, S-H, Kimhofer, T., Hall, D., Loo, R.L., Bizkarguenaga, M., Bruzzone, C., Gil-Redondo, R., Embade, N., Mato, J.M., Holmes, E., Wist, J., Millet, O. and Nicholson, J.K. (2021) Integrative modeling of plasma metabolic and lipoprotein biomarkers of SARS-CoV-2 infection in Spanish and Australian COVID-19 patient cohorts. Journal of Proteome Research, 20 (8). pp. 4139-4152.

Bergamaschi, L., Mescia, F., Turner, L., Hanson, A.L., Kotagiri, P., Dunmore, B.J., Ruffieux, H., De Sa, A., Huhn, O., Morgan, M.D., Gerber, P.P., Wills, M.R., Baker, S., Calero‐Nieto, F. J., Doffinger, R., Dougan, G., Elmer, A., Goodfellow, I.G., Gupta, R.K., Hosmillo, M., Hunter, K., Kingston, N., Lehner, P.J., Matheson, N.J., Nicholson, J.K., Petrunkina, A.M., Richardson, S., Saunders, C., Thaventhiran, J.E.D., Toonen, E.J.M., Weekes, M.P., Göttgens, B., Toshner, M., Hess, C., Bradley, J.R., Lyons, P.A. and Smith, K.G.C. (2021) Longitudinal analysis reveals that delayed bystander CD8+ T cell activation and early immune pathology distinguish severe COVID-19 from mild disease. Immunity, 54 (6). 1257-1275.e8.

Lodge, S., Nitschke, P., Loo, R.L., Kimhofer, T., Bong, S-H, Richards, T., Begum, S., Spraul, M., Schaefer, H., Lindon, J.C., Holmes, E. and Nicholson, J.K. (2021) Low volume in Vitro diagnostic proton NMR Spectroscopy of human blood plasma for lipoprotein and metabolite analysis: Application to SARS-CoV-2 biomarkers. Journal of Proteome Research, 20 (2). pp. 1415-1423.

Nicholson, J.K. (2021) Molecular phenomic approaches to deconvolving the systemic effects of SARS-CoV-2 infection and Post-acute COVID-19 syndrome. Phenomics .

Lodge, S., Nitschke, P., Kimhofer, T., Coudert, J.D., Begum, S., Bong, S-H, Richards, T., Edgar, D., Raby, E., Spraul, M., Schaefer, H., Lindon, J.C., Loo, R.L., Holmes, E. and Nicholson, J.K. (2021) NMR spectroscopic windows on the systemic effects of SARS-CoV-2 infection on plasma lipoproteins and metabolites in relation to circulating cytokines. Journal of Proteome Research, 20 (2). pp. 1382-1396.

Jiménez, B., Abellona U, M.R., Drymousis, P., Kyriakides, M., Clift, A.K., Liu, D.S.K., Rees, E., Holmes, E., Nicholson, J.K., Kinross, J.M. and Frilling, A. (2021) Neuroendocrine neoplasms: Identification of novel metabolic circuits of potential diagnostic utility. Cancers, 13 (3). Art. 374.

Seyfried, F., Phetcharaburanin, J., Glymenaki, M., Nordbeck, A., Hankir, M., Nicholson, J.K., Holmes, E., Marchesi, J.R. and Li, J.V. (2021) Roux-en-Y gastric bypass surgery in Zucker rats induces bacterial and systemic metabolic changes independent of caloric restriction-induced weight loss. Gut Microbes, 13 (1). pp. 1-20.

Li, J.V., Ashrafian, H., Sarafian, M., Homola, D., Rushton, L., Barker, G., Cabrera, P.M., Lewis, M.R., Darzi, A., Lin, E., Gletsu-Miller, N.A., Atkin, S.L., Sathyapalan, T., Gooderham, N.J., Nicholson, J.K., Marchesi, J.R., Athanasiou, T. and Holmes, E. (2021) Roux-en-Y gastric bypass-induced bacterial perturbation contributes to altered host-bacterial co-metabolic phenotype. Microbiome, 9 (1). Art. 139.

Blaise, B.J., Correia, G.D.S., Haggart, G.A., Surowiec, I., Sands, C., Lewis, M.R., Pearce, J.T.M., Trygg, J., Nicholson, J.K., Holmes, E. and Ebbels, T.M.D. (2021) Statistical analysis in metabolic phenotyping. Nature Protocols .

Lawler, N.G., Gray, N., Kimhofer, T., Boughton, B.ORCID: 0000-0001-6342-9814, Gay, M., Yang, R.ORCID: 0000-0003-2563-2015, Morillon, A-C, Chin, S-T, Ryan, M., Begum, S., Bong, S-H, Coudert, J.D., Edgar, D., Raby, E., Pettersson, S., Richards, T., Holmes, E., Whiley, L.ORCID: 0000-0002-9088-4799 and Nicholson, J.K. (2021) Systemic perturbations in amine and kynurenine metabolism associated with acute SARS-CoV-2 infection and inflammatory cytokine responses. Journal of Proteome Research, 20 (5). pp. 2796-2811.

Wei, G.Z., Martin, K.A., Xing, P.Y., Agrawal, R., Whiley, L.ORCID: 0000-0002-9088-4799, Wood, T.K., Hejndorf, S., Ng, Y.Z., Low, J.Z.Y., Rossant, J., Nechanitzky, R., Holmes, E., Nicholson, J.K., Tan, E-K, Matthews, P.M. and Pettersson, S. (2021) Tryptophan-metabolizing gut microbes regulate adult neurogenesis via the aryl hydrocarbon receptor. Proceedings of the National Academy of Sciences, 118 (27). Art. e2021091118.

Posma, J.M., Stamler, J., Garcia-Perez, I., Chan, Q., Wijeyesekera, A., Daviglus, M., Van Horn, L., Holmes, E., Nicholson, J. and Elliott, P. (2021) Urinary metabolic phenotype of blood pressure. Journal of Hypertension, 39 (Supp.1). e70.

Xie, G., Wang, L., Chen, T., Zhou, K., Zhang, Z., Li, J., Sun, B., Guo, Y., Wang, X., Wang, Y., Zhang, H., Liu, P., Nicholson, J.K., Ge, W. and Jia, W. (2021) A metabolite array technology for precision medicine. Analytical Chemistry, 93 (14). pp. 5709-5717.

Gray, N., Lawler, N.G., Yang, R.ORCID: 0000-0003-2563-2015, Morillon, A-C, Gay, M.C.L., Bong, S-H, Holmes, E., Nicholson, J.K. and Whiley, L.ORCID: 0000-0002-9088-4799 (2021) A simultaneous exploratory and quantitative amino acid and biogenic amine metabolic profiling platform for rapid disease phenotyping via UPLC-QToF-MS. Talanta, 223 (Pt. 2). Article 121872.

Letertre, M.P.M., Myridakis, A., Whiley, L.ORCID: 0000-0002-9088-4799, Camuzeaux, S., Lewis, M.R., Chappell, K.E., Thaikkatil, A., Dumas, M-E, Nicholson, J.K., Swann, J.R. and Wilson, I.D. (2021) A targeted ultra performance liquid chromatography – Tandem mass spectrometric assay for tyrosine and metabolites in urine and plasma: Application to the effects of antibiotics on mice. Journal of Chromatography B, 1164 . Art. 122511.

2020

Barbas-Bernardos, C., Garcia-Perez, I., Lorenzo, M.P., Alonso-Herranz, V., Nicholson, J. and Garcia, A. (2020) Development and validation of a high performance liquid chromatography-tandem mass spectrometry method for the absolute analysis of 17 α D-amino acids in cooked meals. Journal of Chromatography A, 1611 . Art. 460598.

Garcia-Perez, I., Posma, J.M., Serrano-Contreras, J.I., Boulangé, C.L., Chan, Q., Frost, G., Stamler, J., Elliott, P., Lindon, J.C., Holmes, E. and Nicholson, J.K. (2020) Identifying unknown metabolites using NMR-based metabolic profiling techniques. Nature Protocols, 15 . pp. 2538-2567.

Vonhof, E.V., Piotto, M., Holmes, E., Lindon, J.C., Nicholson, J.K. and Li, J.V. (2020) Improved spatial resolution of metabolites in tissue biopsies using high-resolution Magic-Angle-Spinning slice localization NMR spectroscopy. Analytical Chemistry, 92 (17). pp. 11516-11519.

Kimhofer, T., Lodge, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Loo, R.L., Lawler, N.G., Nitschke, P., Bong, S-H, Morrison, D.L., Begum, S., Richards, T., Yeap, B.B., Smith, C., Smith, K.G.C., Holmes, E. and Nicholson, J.K. (2020) Integrative modeling of quantitative plasma lipoprotein, metabolic, and amino acid data reveals a multiorgan pathological signature of SARS-CoV-2 infection. Journal of Proteome Research, 19 (11). pp. 4442-4454.

West, K.A., Kanu, C., Maric, T., McDonald, J.A.K., Nicholson, J.K., Li, J.V., Johnson, M.R, Holmes, E. and Savvidou, M.D. (2020) Longitudinal metabolic and gut bacterial profiling of pregnant women with previous bariatric surgery. Gut, 69 (8). pp. 1452-1459.

Koundouros, N., Karali, E., Tripp, A., Valle, A., Inglese, P., Perry, N.J.S., Magee, D.J., Anjomani Virmouni, S., Elder, G.A., Tyson, A.L., Dória, M.L., van Weverwijk, A., Soares, R.F., Isacke, C.M., Nicholson, J.K., Glen, R.C., Takats, Z. and Poulogiannis, G. (2020) Metabolic Fingerprinting Links Oncogenic PIK3CA with Enhanced Arachidonic Acid-Derived Eicosanoids. Cell, 181 (7). 1596-1611.e27.

Letertre, M., Munjoma, N.C., Slade, S.E., Plumb, R.S., Swann, J., Coen, M., Nicholson, J.K. and Wilson, I.D. (2020) Metabolic phenotyping using UPLC–MS and rapid microbore UPLC–IM–MS: Determination of the effect of different dietary regimes on the urinary metabolome of the Rat. Chromatographia .

Posma, J.M., Garcia-Perez, I., Frost, G., Aljuraiban, G.S., Chan, Q., Van Horn, L., Daviglus, M., Stamler, J., Holmes, E., Elliott, P. and Nicholson, J.K. (2020) Nutriome–metabolome relationships provide insights into dietary intake and metabolism. Nature Food, 1 (7). pp. 426-436.

Loo, R.L., Lodge, S., Kimhofer, T., Bong, S-H, Begum, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Lindon, J.C., Nitschke, P., Lawler, N.G., Schäfer, H., Spraul, M., Richards, T., Nicholson, J.K. and Holmes, E. (2020) Quantitative in-vitro diagnostic NMR spectroscopy for lipoprotein and metabolite measurements in plasma and serum: Recommendations for analytical artifact minimization with special reference to COVID-19/SARS-CoV-2 Samples. Journal of Proteome Research, 19 (11). pp. 4428-4441.

Loo, R.L., Chan, Q., Antti, H., Li, J.V., Ashrafian, H., Elliott, P., Stamler, J., Nicholson, J.K., Holmes, E., Wist, J. and Wren, J. (2020) Strategy for improved characterization of human metabolic phenotypes using a COmbined Multi-block principal components analysis with statistical spectroscopy (COMPASS). Bioinformatics, 36 (21). pp. 5229-5236.

Letertre, M.P.M., Munjoma, N., Wolfer, K., Pechlivanis, A., McDonald, J.A.K., Hardwick, R.N., Cherrington, N.J., Coen, M., Nicholson, J.K., Hoyles, L., Swann, J.R. and Wilson, I.D. (2020) A Two-Way interaction between Methotrexate and the Gut Microbiota of Male Sprague–Dawley Rats. Journal of Proteome Research, 19 (8). pp. 3326-3339.

Kurbatova, N., Garg, M., Whiley, L.ORCID: 0000-0002-9088-4799, Chekmeneva, E., Jiménez, B., Gómez-Romero, M., Pearce, J., Kimhofer, T., D’Hondt, E., Soininen, H., Kłoszewska, I., Mecocci, P., Tsolaki, M., Vellas, B., Aarsland, D., Nevado-Holgado, A., Liu, B., Snowden, S., Proitsi, P., Ashton, N.J., Hye, A., Legido-Quigley, C., Lewis, M.R., Nicholson, J.K., Holmes, E., Brazma, A. and Lovestone, S. (2020) Urinary metabolic phenotyping for Alzheimer’s disease. Scientific Reports, 10 (1). Art. 21745.

2019

Shen, E.Y-L, Abellona, U., Taylor-Robinson, S., Thursz, M., Holmes, E. and Nicholson, J. (2019) Abstract 5269: Discovery and validation of plasma acylcarnitines for the early diagnosis of hepatocellular carcinoma. Cancer Research, 79 (13). p. 5269.

McGill, D., Chekmeneva, E., Lindon, J.C., Takats, Z. and Nicholson, J.K. (2019) Application of novel solid phase extraction-NMR protocols for metabolic profiling of human urine. Faraday Discussions, 218 . pp. 395-416.

Seow, W.J., Shu, X-O, Nicholson, J.K., Holmes, E., Walker, D.I., Hu, W., Cai, Q., Gao, Y-T, Xiang, Y-B, Moore, S.C., Bassig, B.A., Wong, J.Y.Y., Zhang, J., Ji, B-T, Boulangé, C.L., Kaluarachchi, M., Wijeyesekera, A., Zheng, W., Elliott, P., Rothman, N. and Lan, Q. (2019) Association of untargeted urinary metabolomics and lung cancer risk among never-smoking women in China. JAMA Network Open, 2 (9).

Nye, L.C., Williams, J.P., Munjoma, N.C., Letertre, M.P.M., Coen, M., Bouwmeester, R., Martens, L., Swann, J.R., Nicholson, J.K., Plumb, R.S., McCullagh, M., Gethings, L.A., Lai, S., Langridge, J.I., Vissers, J.P.C. and Wilson, I.D. (2019) A Comparison of Collision Cross Section Values Obtained via Travelling Wave Ion Mobility-Mass Spectrometry and Ultra High Performance Liquid Chromatography-Ion Mobility-Mass Spectrometry: Application to the Characterisation of Metabolites in Rat Urine. Journal of Chromatography A, 1602 . pp. 386-396.

Kundu, P., Lee, H.U., Garcia-Perez, I., Tay, E.X.Y., Kim, H., Faylon, L.E., Martin, K.A., Purbojati, R., Drautz-Moses, D.I., Ghosh, S., Nicholson, J.K., Schuster, S., Holmes, E. and Pettersson, S. (2019) Neurogenesis and prolongevity signaling in young germ-free mice transplanted with the gut microbiota of old mice. Science Translational Medicine, 11 (518).

Whiley, L.ORCID: 0000-0002-9088-4799, Chekmeneva, E., Berry, D.J., Jiménez, B., Yuen, A.H.Y., Salam, A., Hussain, H., Witt, M., Takats, Z., Nicholson, J. and Lewis, M.R. (2019) Systematic isolation and structure elucidation of urinary metabolites optimized for the analytical-scale molecular profiling laboratory. Analytical Chemistry, 91 (14). pp. 8873-8882.

Brial, F., Le Lay, A., Hedjazi, L., Tsang, T., Fearnside, J.F., Otto, G.W., Alzaid, F., Wilder, S.P., Venteclef, N., Cazier, J-B, Nicholson, J.K., Day, C., Burt, A.D., Gut, I.G., Lathrop, M., Dumas, M-E and Gauguier, D. (2019) Systems genetics of Hepatic Metabolome Reveals Octopamine as a Target for Non-Alcoholic Fatty Liver Disease Treatment. Scientific Reports, 9 (1).

Whiley, L.ORCID: 0000-0002-9088-4799, Nye, L.C., Grant, I., Andreas, N., Chappell, K.E., Sarafian, M.H., Misra, R., Plumb, R.S., Lewis, M.R., Nicholson, J.K., Holmes, E., Swann, J.R. and Wilson, I.D. (2019) Ultrahigh-performance liquid chromatography tandem mass spectrometry with electrospray ionization quantification of tryptophan metabolites and markers of gut health in serum and plasma — Application to clinical and epidemiology cohorts. Analytical Chemistry, 91 (8). pp. 5207-5216.

Lahiri, S., Kim, H., Garcia-Perez, I., Reza, M.M., Martin, K.A., Kundu, P., Cox, L.M., Selkrig, J., Posma, J.M., Zhang, H., Padmanabhan, P., Moret, C., Gulyás, B., Blaser, M.J., Auwerx, J., Holmes, E., Nicholson, J., Wahli, W. and Pettersson, S. (2019) The gut microbiota influences skeletal muscle mass and function in mice. Science Translational Medicine, 11 (502).

Everett, J.R., Holmes, E., Veselkov, K.A., Lindon, J.C. and Nicholson, J.K. (2019) A unified conceptual framework for metabolic phenotyping in diagnosis and prognosis. Trends in Pharmacological Sciences, 40 (10). pp. 763-773.

2018

Domingo-Almenara, X., Montenegro-Burke, J.R., Ivanisevic, J., Thomas, A., Sidibé, J., Teav, T., Guijas, C., Aisporna, A.E., Rinehart, D., Hoang, L., Nordström, A., Gómez-Romero, M., Whiley, L.ORCID: 0000-0002-9088-4799, Lewis, M.R., Nicholson, J.K., Benton, H.P. and Siuzdak, G. (2018) XCMS-MRM and METLIN-MRM: A cloud library and public resource for targeted analysis of small molecules. Nature Methods, 15 (9). pp. 681-684.

Gray, N., Plumb, R.S., Wilson, I.D. and Nicholson, J.K. (2018) A validated UPLC-MS/MS assay for the quantification of amino acids and biogenic amines in rat urine. Journal of Chromatography B, 1106 . pp. 50-57.