Publications: McCooke, John

Journal Article

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q, Barrero, R.A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G.J., Kersey, P., Clark, M.D., Caccamo, M., Schulman, A.H., Platzer, M., Close, T.J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. and Mascher, M. (2017) Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4 . Article number: 170044.

Barrero, R.A., Guerrero, F.D., Black, M.L., McCooke, J.K., Chapman, B., Schilkey, F., Pérez de León, A.A., Miller, R.J., Bruns, S., Dobry, J., Mikhaylenko, G., Stormo, K., Bell, C., Tao, Q., Bogden, R., Moolhuijzen, P.M., Hunter, A. and Bellgard, M.I. (2017) Gene-enriched draft genome of the cattle tick Rhipicephalus microplus : assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome. International Journal for Parasitology, 47 (9). pp. 569-583.

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P.E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q, Zhang, Q., Barrero, R.A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y.ORCID: 0000-0001-6480-0398, Li, H., Li, X., Lin, C., McCooke, J.K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J.A., Bellgard, M.I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G.J., Clark, M.D., Caccamo, M., Schulman, A.H., Mayer, K.F.X., Platzer, M., Close, T.J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. and Stein, N. (2017) A chromosome conformation capture ordered sequence of the barley genome. Nature, 544 (7651). pp. 427-433.

Bendele, K.G., Guerrero, F.D., Miller, R.J., Li, A.Y., Barrero, R.A., Moolhuijzen, P.M., Black, M., McCooke, J.K., Meyer, J., Hill, C.A. and Bellgard, M.I. (2015) Acetylcholinesterase 1 in populations of organophosphate-resistant North American strains of the cattle tick, Rhipicephalus microplus (Acari: Ixodidae). Parasitology Research, 114 (8). pp. 3027-3040.

Forster, L., McCooke, J., Bellgard, M., Joske, D., Finlayson, J. and Ghassemifar, R. (2015) Differential gene expression analysis in early and late erythroid progenitor cells in β-thalassaemia. British Journal of Haematology, 170 (2). pp. 257-267.

McCooke, J.K., Guerrero, F.D., Barrero, R.A., Black, M., Hunter, A., Bell, C., Schilkey, F., Miller, R.J. and Bellgard, M.I. (2015) The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads. Gene, 571 (1). pp. 135-141.

McCooke, J.K., Appels, R., Barrero, R.A., Ding, A., Ozimek-Kulik, J.E., Bellgard, M.I., Morahan, G. and Phillips, J.K. (2012) A novel mutation causing nephronophthisis in the Lewis polycystic kidney rat localises to a conserved RCC1 domain in Nek8. BMC Genomics, 13 (1). p. 393.

Powers-Martin, K., Barron, A.M., Auckland, C.H., McCooke, J.K., McKitrick, D.J., Arnolda, L.F. and Phillips, J.K. (2008) Immunohistochemical assessment of cyclic guanosine monophosphate (cGMP) and soluble guanylate cyclase (sGC) within the rostral ventrolateral medulla. Journal of Biomedical Science, 15 (6). pp. 801-812.

Conference Paper

Bellgard, M., Render, L., McCooke, J.K., Black, M., Baynam, G., Dawkins, H., Moolhuijzen, P., Barrero, R.A. and Hunter, A. (2014) Towards integrating NGS workflows into disease registries. In: Plant & Animal Genome Asia 2014, 19 - 21 May 2014, Grand Copthorne Waterfront Hotel, Singapore

Conference Item

Bellgard, M., Render, L., McCooke, J.K., Black, M.L., Baynam, G., Dawkins, H., Barrero, R., Moolhuijzen, P., Szabo, T. and Hunter, A. (2014) Towards integrating NGS workflows within disease registries. In: Joint RD-Connect / EURenOmics / Neuromics meeting 2014, 23 - 26 February 2014, Heidelberg, Germany.