Publications: Keeble-Gagnere, Gabriel

Journal Article

Juhász, A., Belova, T., Florides, C.G., Maulis, C., Fischer, I., Gell, G., Birinyi, Z., Ong, J., Keeble-Gagnère, G., Maharajan, A., Ma, W.ORCID: 0000-0002-1264-866X, Gibson, P., Jia, J., Lang, D., Mayer, K.F.X., Spannagl, M., Tye-Din, J.A., Appels, R. and Olsen, O.-A. (2018) Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat. Science Advances, 4 (8). eaar8602.

Keeble-Gagnère, G., Rigault, P., Tibbits, J., Pasam, R., Hayden, M., Forrest, K., Frenkel, Z., Korol, A., Huang, B.E., Cavanagh, C., Taylor, J., Abrouk, M., Sharpe, A., Konkin, D., Sourdille, P., Darrier, B., Choulet, F., Bernard, A., Rochfort, S., Dimech, A., Watson-Haigh, N., Baumann, U., Eckermann, P., Fleury, D., Juhász, A., Boisvert, S., Nolin, M.-A., Doležel, J., Šimková, H., Toegelová, H., Safar, J., Luo, M.-C., Câmara, F., Pfeifer, M., Isdale, D., Nyström-Persson, J., Koo, D.-H., Tinning, M., Cui, D., Ru, Z. and Appels, R. (2018) Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome. Genome Biology, 19 (1). Article 112.

Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., Pozniak, C.J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Ronen, G., Barad, O., Baruch, K., Keeble-Gagnère, G., Mascher, M., Sharpe, A.G., Ben-Zvi, G., Josselin, A-A, Himmelbach, A., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A-A, Koh, C., Muehlbauer, G., Pasam, R.K., Paux, E., Rigault, P., Tibbits, J., Tiwari, V., Spannagl, M., Lang, D., Gundlach, H., Haberer, G., Mayer, K.F.X., Ormanbekova, D., Prade, V., Šimková, H., Wicker, T., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Kaithakottil, G., Keilwagen, J., Leroy, P., Lux, T., Twardziok, S., Venturini, L., Juhász, A., Abrouk, M., Wicker, T., Fischer, I., Uauy, C., Borrill, P., Ramirez-Gonzalez, R.H., Arnaud, D., Chalabi, S., Chalhoub, B., Cory, A., Datla, R., Davey, M.W., Jacobs, J., Robinson, S.J., Steuernagel, B., van Ex, F., Wulff, B.B.H., Benhamed, M., Bendahmane, A., Concia, L., Latrasse, D., Alaux, M., Bartoš, J., Bellec, A., Berges, H., Doležel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O-A, Šimková, H., Singh, K., Valárik, M., van der Vossen, E., Vautrin, S., Weining, S., Korol, A., Fahima, T., Glikson, V., Raats, D., Poland, J., Číhalíková, J., Toegelová, H., Vrána, J., Sourdille, P., Darrier, B., Fischer, I., Ormanbekova, D., Prade, V., Barabaschi, D., Cattivelli, L., Hernandez, P., Galvez, S., Budak, H., Steuernagel, B., Jones, J.D.G., Witek, K., Wulff, B.B.H., Yu, G., Small, I., Melonek, J., Zhou, R., Belova, T., Olsen, O-A, Kanyuka, K., King, R., Nilsen, K., Walkowiak, S., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Rohde, A., Gold, T., Čížková, J., Tibbits, J., Budak, H., Akpinar, B.A., Biyiklioglu, S., Muehlbauer, G., Poland, J., Gao, L., N’Daiye, A., Číhalíková, J., Kubaláková, M., Šafář, J., Vrána, J., Berges, H., Bellec, A., Vautrin, S., Alaux, M., Alfama, F., Adam-Blondon, A-F, Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C.S., Maclachlan, R., Tan, Y., Wicker, T., Alberti, A., Aury, J-M, Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., Gill, B., Kaur, G., Luo, M., Sehgal, S., Chhuneja, P., Gupta, O.P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., Singh, N.K., Khurana, J.P., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R.S., van der Vossen, E., Vautrin, S., Kaur, G., Sehgal, S., Holušová, K., Plíhal, O., Clark, M.D., Heavens, D., Kettleborough, G., Wright, J., Valárik, M., Abrouk, M., Balcárková, B., Holušová, K., Hu, Y., Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., Cattonaro, F., Jiumeng, M., Kugler, K.G., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., Abrouk, M., Batley, J., Bayer, P.E., Edwards, D., Hayashi, S., Toegelová, H., Tulpová, Z., Visendi, P., Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Galvez, S., Kaithakottil, G., Lux, T., Ormanbekova, D., Prade, V., Eversole, K., Borrill, P., Hernandez, P., Kanyuka, K., Mascher, M., Nilsen, K., Small, I. and Swarbreck, D. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403).

Reyneke, E., Abrouk, M., Keeble-Gagnère, G., Karafiátová, M., Vrána, J., Balzergue, S., Soubigou-Taconnat, L., Brunaud, V., Martin-Magniette, M-L, Endo, T.R., Bartoš, J., Appels, R. and Doležel, J. (2018) Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat. Plant Biotechnology Journal, 16 (10). pp. 1767-1777.

Kaur, P., Appels, R., Bayer, P.E., Keeble-Gagnère, G., Wang, J., Hirakawa, H., Shirasawa, K., Vercoe, P., Stefanova, K., Durmic, Z., Nichols, P., Revell, C., Isobe, S.N., Edwards, D. and Erskine, W. (2017) Climate clever clovers: New paradigm to reduce the environmental footprint of ruminants by breeding low methanogenic forages utilizing haplotype variation. Frontiers in Plant Science, 8 .

Voss-Fels, K.P., Qian, L., Parra-Londono, S., Uptmoor, R., Frisch, M., Keeble-Gagnère, G., Appels, R. and Snowdon, R.J. (2017) Linkage drag constrains the roots of modern wheat. Plant, Cell & Environment . Early View.

Hill, C.B.ORCID: 0000-0002-6754-5553, Cassin, A., Keeble-Gagnère, G., Doblin, M.S., Bacic, A. and Roessner, U. (2016) De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure. Scientific Reports, 6 . Article 31558.

Chen, X.Y., Cao, X.Y., Zhang, Y.J., Islam, S., Zhang, J.J.ORCID: 0000-0002-1623-4675, Yang, R.C.ORCID: 0000-0003-2563-2015, Liu, J.J., Li, G.Y., Appels, R., Keeble-Gagnère, G., Ji, W.Q., He, Z.H. and Ma, W.J.ORCID: 0000-0002-1264-866X (2016) Genetic characterization of cysteine-rich type-b avenin-like protein coding genes in common wheat. Scientific Reports, 6 . Article number: 30692.

Appels, R., Nyström, J., Webster, H. and Keeble-Gagnère, G. (2015) Discoveries and advances in plant and animal genomics. Functional & Integrative Genomics, 15 (2). pp. 121-129.

Appels, R., Nyström-Persson, J. and Keeble-Gagnère, G. (2014) Advances in genome studies in plants and animals. Functional & Integrative Genomics, 14 (1). pp. 1-9.

Barrero, R.A., Moolhuijzen, P., Indjein, L., Venus, B., Keeble-Gagnère, G., Power, J., Bellgard, M.I. and Lew-Tabor, A.E. (2014) Draft Genome Sequences of Campylobacter fetus subsp. venerealis bv. venerealis Strain B6 and bv. intermedius Strain 642-21. Genome Announcements, 2 (5). e00943.

Ouyang, S., Zhang, D., Han, J., Zhao, X., Cui, Y., Song, W., Huo, N., Liang, Y., Xie, J., Wang, Z., Wu, Q., Chen, Y-X, Lu, P., Zhang, D-Y, Wang, L., Sun, H., Yang, T., Keeble-Gagnère, G., Appels, R., Doležel, J., Ling, H-Q, Luo, M., Gu, Y., Sun, Q. and Liu, Z. (2014) Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides). PLoS ONE, 9 (6).

Edwards, D., Wilcox, S., Barrero, R.A., Fleury, D., Cavanagh, C.R., Forrest, K.L., Hayden, M.J., Moolhuijzen, P., Keeble-Gagnère, G., Bellgard, M.I., Lorenc, M.T., Shang, C.A., Baumann, U., Taylor, J.M., Morell, M.K., Langridge, P., Appels, R. and Fitzgerald, A. (2012) Bread matters: a national initiative to profile the genetic diversity of Australian wheat. Plant Biotechnology Journal, 10 (6). pp. 703-708.

Webster, H., Keeble-Gagnère, G., Dell, B., Fosu-Nyarko, J., Mukai, Y., Moolhuijzen, P., Bellgard, M., Jia, J., Kong, X., Feuillet, C., Choulet, F., International Wheat Genome Sequencing Consortium, and Appels, R. (2012) Genome-level identification of cell wall invertase genes in wheat for the study of drought tolerance. Functional Plant Biology, 39 (7). pp. 569-579.

Keeble-Gagnère, G., Nyström-Persson, J., Bellgard, M.I. and Mizuguchi, K. (2012) An open framework for extensible multi-stage bioinformatics software. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7632 (7632). pp. 106-117.

Barrero, R.A., Chapman, B., Yang, Y., Moolhuijzen, P., Keeble-Gagnère, G., Zhang, N., Tang, Q., Bellgard, M.I. and Qiu, D. (2011) De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes. BMC Genomics, 12 (1). p. 600.

Barrero, R.A., Keeble-Gagnère, G., Zhang, B., Moolhuijzen, P., Ikeo, K., Tateno, Y., Gojobori, T., Guerrero, F.D., Lew-Tabor, A. and Bellgard, M. (2011) Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus. BMC Genomics, 12 (1). Article No. 328.

Appels, R., Barrero, R., Keeble, G. and Bellgard, M. (2010) Advances in genome studies: the PAG 2010 conference. Functional & Integrative Genomics, 10 (1). pp. 1-9.

Conference Paper

Webster, H., Keeble-Gagnère, G., Zhang, J.ORCID: 0000-0002-1623-4675 and Appels, R. (2014) A chromosome region of chromosome 5B underpinning spike development in wheat. In: Plant & Animal Genome Asia 2014, 19 - 21 May 2014, Grand Copthorne Waterfront Hotel, Singapore

Conference Item

Appels, R., Keeble-Gagnère, G., Chapman, B., Fleury, D., Bellgard, M., Diepeveen, D.ORCID: 0000-0002-1535-8019, Zhang, J.ORCID: 0000-0002-1623-4675, Webster, H., Islam, S. and Ma, W.ORCID: 0000-0002-1264-866X (2013) Sequencing chromosome 7A and the Australia-China centre for wheat improvement. In: Wheat Breeding Assembly 2013, 17 - 19 July 2013, Brisbane, Australia.

Webster, H., Tibbits, J., Hayden, M., Dell, B., Fosu-Nyarko, J., Keeble, G., Bellgard, M., I.W.G.S.C., and Appels, R. (2013) Utilization of the IWGSC wheat survey sequence for RNASEQ analysis of water stress effects in developing wheat heads. In: ComBio 2013, 29 September - 3 October, Perth, Western Australia.

Lew-Tabor, A., Barrero, R., Indjein, L., Keeble, G., Power, J. and Bellgard, M. (2011) Preliminary genome studies of Campylobacter fetus subspecies venerealis. In: Australian Society for Microbiology (ASM) Annual Scientific Meeting (ASM) 2011, 4 - 8 July 2011, Hobart, Tasmania.

Keeble, G., Black, M., Moolhuijzen, P., Barrero, R., Bellgard, M. and Appels, R. (2011) Structure–function studies in the wheat genome. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Webster, H., Fosu-Nyarko, J., Keeble, G., Moolhuijzen, P., Bellgard, M. and Appels, R. (2011) The cell wall invertase (IVR1) gene from wheat. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.