Publications: Hu, Haifei

Journal Article

Hu, H.ORCID: 0000-0003-1070-213X, Scheben, A., Verpaalen, B., Tirnaz, S., Bayer, P.E., Hodel, R.G.J., Batley, J., Soltis, D.E., Soltis, P.S. and Edwards, D. (2021) Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. New Phytologist . Early View.

Marsh, J.I., Hu, H.ORCID: 0000-0003-1070-213X, Gill, M., Batley, J. and Edwards, D. (2021) Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. Theoretical and Applied Genetics, 134 (6). pp. 1677-1690.

Yuan, Z., Long, W., Hu, H.ORCID: 0000-0003-1070-213X, Liang, T., Luo, X., Hu, Z., Zhu, R. and Wu, X. (2021) Genome-wide identification and expansion patterns of SULTR gene family in Gramineae crops and their expression profiles under abiotic stress in Oryza sativa. Genes, 12 (5). Article 634.

Bayer, P.E., Valliyodan, B., Hu, H.ORCID: 0000-0003-1070-213X, Marsh, J.I., Yuan, Y., Vuong, T.D., Patil, G., Song, Q., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lam, H‐M, Edwards, D. and Nguyen, H.T. (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome, Early View . e20109.

Wang, K., Hu, H.ORCID: 0000-0003-1070-213X, Tian, Y., Li, J., Scheben, A., Zhang, C., Li, Y., Wu, J., Yang, L., Fan, X., Sun, G., Li, D., Zhang, Y., Han, R., Jiang, R., Huang, H., Yan, F., Wang, Y., Li, Z., Li, G., Liu, X., Li, W., Edwards, D., Kang, X. and Wittkopp, P. (2021) The chicken pan-genome reveals gene content variation and a promoter region deletion in IGF2BP1 affecting body size. Molecular Biology and Evolution, 38 (11). pp. 5066-5081.

Valliyodan, B., Cannon, S.B., Bayer, P.E., Shu, S., Brown, A.V., Ren, L., Jenkins, J., Chung, C.Y.L., Chan, T‐F, Daum, C.G., Plott, C., Hastie, A., Baruch, K., Barry, K.W., Huang, W., Patil, G., Varshney, R.K.ORCID: 0000-0002-4562-9131, Hu, H.ORCID: 0000-0003-1070-213X, Batley, J., Yuan, Y., Song, Q., Stupar, R.M., Goodstein, D.M., Stacey, G., Lam, H‐M, Jackson, S.A., Schmutz, J., Grimwood, J., Edwards, D. and Nguyen, H.T. (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal, 100 (5). pp. 1066-1082.

Hu, H.ORCID: 0000-0003-1070-213X, Scheben, A. and Edwards, D. (2018) Advances in integrating genomics and bioinformatics in the plant breeding pipeline. Agriculture, 8 (6). Article 75.

Yuan, Y., Lee, H.T., Hu, H.ORCID: 0000-0003-1070-213X, Scheben, A. and Edwards, D. (2018) Single-cell genomic analysis in plants. Genes, 9 (1). Article 50.

Non-refereed Article

Marsh, J.I., Hu, H.ORCID: 0000-0003-1070-213X, Petereit, J., Bayer, P.E., Valliyodan, B., Batley, J., Nguyen, H.T. and Edwards, D. (2021) Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003. bioRxiv . pp. 1-28.

Conference Paper

Hu, H.ORCID: 0000-0003-1070-213X, Scheben, A., Verpaalen, B., Tirnaz, S., Bayer, P.E., Hodel, R.G.J., Batley, J., Soltis, D.E., Soltis, P.S. and Edwards, D. (2020) The Amborella Pangenome suggests gene presence/absence variation is associated with environmental adaptation. In: Plant & Animal Genome Conference XXVIII, 11 - 15 January 2020, San Diego, CA

Book Chapter

Hu, H.ORCID: 0000-0003-1070-213X, Yuan, Y., Bayer, P.E., Fernandez, C.T., Scheben, A., Golicz, A.A. and Edwards, D. (2020) Legume pangenome construction using an iterative mapping and assembly approach. In: Jain, M. and Garg, R., (eds.) Legume Genomics. Humana Press, pp. 35-47.