Publications: Boughton, Berin

Journal Article

Yu, D., Boughton, B.A.ORCID: 0000-0001-6342-9814, Hill, C.B.ORCID: 0000-0002-6754-5553, Feussner, I., Roessner, U. and Rupasinghe, T.W.T. (2020) Insights into oxidized lipid modification in barley roots as an adaptation mechanism to salinity stress. Frontiers in Plant Science, 11 . Article 1.

Alcantara, H.J.P., Jativa, F., Doronila, A.I., Anderson, C.W.N., Siegele, R., Spassov, T.G., Sanchez-Palacios, J.T., Boughton, B.A.ORCID: 0000-0001-6342-9814 and Kolev, S.D. (2020) Localization of mercury and gold in cassava (Manihot esculenta Crantz). Environmental Science and Pollution Research, 27 (15). pp. 18498-18509.

Gottlieb, S., Rand, J., Anderson, S.T., Morton, J.M., Dias, D.A., Boughton, B.A.ORCID: 0000-0001-6342-9814, Roessner, U. and Ramadan, Z. (2020) Metabolic profiling of diabetic cats in remission. Frontiers in Veterinary Science, 7 . Article 218.

Miller, R.E., Bayly, M.J., Boughton, B.A.ORCID: 0000-0001-6342-9814 and Ritmejerytė, E. (2020) Unique and highly specific cyanogenic glycoside localization in stigmatic cells and pollen in the genus Lomatia (Proteaceae). Annals of Botany . mcaa038.

Sarabia, L.D., Boughton, B.A.ORCID: 0000-0001-6342-9814, Rupasinghe, T., Callahan, D.L., Hill, C.B.ORCID: 0000-0002-6754-5553 and Roessner, U. (2019) Comparative spatial lipidomics analysis reveals cellular lipid remodelling in different developmental zones of barley roots in response to salinity. Plant, Cell & Environment, 43 (2). pp. 327-343.

Marques dos Santos, B., Zibrandtsen, J.F.S., Gunbilig, D., Sørensen, M., Cozzi, F., Boughton, B.A.ORCID: 0000-0001-6342-9814, Heskes, A.M. and Neilson, E.H.J. (2019) Corrigendum: Quantification and localization of Formylated Phloroglucinol Compounds (FPCs) in Eucalyptus Species. Frontiers in Plant Science, 10 . Article 1052.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Thomas, O.R.B., Demarais, N.J., Trede, D., Swearer, S.E. and Grey, A.C. (2019) Detection of small molecule concentration gradients in ocular tissues and humours. Journal of Mass Spectrometry, 55 (4). e4460.

Ritmejerytė, E., Boughton, B.A.ORCID: 0000-0001-6342-9814, Bayly, M.J. and Miller, R.E. (2019) Divergent responses of above- and below-ground chemical defence to nitrogen and phosphorus supply in waratahs (Telopea speciosissima). Functional Plant Biology, 46 (12). pp. 1134-1145.

Santos, B.M., Zibrandtsen, J.F.S., Gunbilig, D., Sørensen, M., Cozzi, F., Boughton, B.A.ORCID: 0000-0001-6342-9814, Heskes, A.M. and Neilson, E.H.J. (2019) Quantification and localization of formylated phloroglucinol compounds (FPCs) in eucalyptus species. Frontiers in Plant Science, 10 . Article 186.

Gupta, S., Rupasinghe, T., Callahan, D.L., Natera, S.H.A., Smith, P.M.C., Hill, C.B.ORCID: 0000-0002-6754-5553, Roessner, U. and Boughton, B.A.ORCID: 0000-0001-6342-9814 (2019) Spatio-temporal metabolite and elemental profiling of salt stressed barley seeds during initial stages of germination by MALDI-MSI and µ-XRF spectrometry. Frontiers in Plant Science, 10 . Article 1139.

Zare, T., Rupasinghe, T.W.T., Boughton, B.A.ORCID: 0000-0001-6342-9814 and Roessner, U. (2019) The changes in the release level of polyunsaturated fatty acids (ω-3 and ω-6) and lipids in the untreated and water-soaked chia seed. Food Research International, 126 . Article 108665.

Gustafsson, O.J.R., Winderbaum, L.J., Condina, M.R., Boughton, B.A.ORCID: 0000-0001-6342-9814, Hamilton, B.R., Undheim, E.A.B., Becker, M. and Hoffmann, P. (2018) Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. GigaScience, 7 (10). giy102.

Heskes, A.M., Sundram, T.C.M., Boughton, B.A.ORCID: 0000-0001-6342-9814, Jensen, N.B., Hansen, N.L., Crocoll, C., Cozzi, F., Rasmussen, S., Hamberger, B., Hamberger, B., Staerk, D., Møller, B.L. and Pateraki, I. (2018) Biosynthesis of bioactive diterpenoids in the medicinal plant Vitex agnus‐castus. The Plant Journal, 93 (5). pp. 943-958.

Sarabia, L.D., Boughton, B.A.ORCID: 0000-0001-6342-9814, Rupasinghe, T.W.T., van de Meene, A.M.L., Callahan, D.L., Hill, C.B.ORCID: 0000-0002-6754-5553 and Roessner, U. (2018) High-mass-resolution MALDI mass spectrometry imaging reveals detailed spatial distribution of metabolites and lipids in roots of barley seedlings in response to salinity stress. Metabolomics, 14 . Article number: 63.

Bøgeskov Schmidt, F., Heskes, A.M., Thinagaran, D., Lindberg Møller, B., Jørgensen, K. and Boughton, B.A.ORCID: 0000-0001-6342-9814 (2018) Mass spectrometry based imaging of labile glucosides in plants. Frontiers in Plant Science, 9 . Article 892.

Madio, B., Peigneur, S., Chin, Y.K.Y., Hamilton, B.R., Henriques, S.T., Smith, J.J., Cristofori-Armstrong, B., Dekan, Z., Boughton, B.A.ORCID: 0000-0001-6342-9814, Alewood, P.F., Tytgat, J., King, G.F. and Undheim, E.A.B. (2018) PHAB toxins: A unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold. Cellular and Molecular Life Sciences, 75 . pp. 4511-4524.

Hansen, C.C., Sørensen, M., Veiga, T.A.M., Zibrandtsen, J.F.S., Heskes, A.M., Olsen, C.E., Boughton, B.A.ORCID: 0000-0001-6342-9814, Møller, B.L. and Neilson, E.H.J. (2018) Reconfigured cyanogenic glucoside biosynthesis in Eucalyptus cladocalyx involves a cytochrome P450 CYP706C55. Plant Physiology, 178 (3). pp. 1081-1095.

Beale, D.J., Pinu, F.R., Kouremenos, K.A., Poojary, M.M., Narayana, V.K., Boughton, B.A.ORCID: 0000-0001-6342-9814, Kanojia, K., Dayalan, S., Jones, O.A.H. and Dias, D.A. (2018) Review of recent developments in GC–MS approaches to metabolomics-based research. Metabolomics, 14 . Article number: 152.

Holmes, J.L., Abrahams, B.F., Ahveninen, A., Boughton, B.A.ORCID: 0000-0001-6342-9814, Hudson, T.A., Robson, R. and Thinagaran, D. (2018) Self-assembly of a Si-based cage by the formation of 24 equivalent covalent bonds. Chemical Communications, 54 (84). pp. 11877-11880.

Yu, D., Rupasinghe, T.W.T., Boughton, B.A.ORCID: 0000-0001-6342-9814, Natera, S.H.A., Hill, C.B.ORCID: 0000-0002-6754-5553, Tarazona, P., Feussner, I. and Roessner, U. (2018) A high-resolution HPLC-QqTOF platform using parallel reaction monitoring for in-depth lipid discovery and rapid profiling. Analytica Chimica Acta, 1026 . pp. 87-100.

Mukherjee, S., Kapp, E.A., Lothian, A., Roberts, A.M., Vasil’ev, Y.V., Boughton, B.A.ORCID: 0000-0001-6342-9814, Barnham, K.J., Kok, W.M., Hutton, C.A., Masters, C.L., Bush, A.I., Beckman, J.S., Dey, S.G. and Roberts, B.R. (2017) Characterization and identification of dityrosine cross-linked peptides using tandem mass spectrometry. Analytical Chemistry, 89 (11). pp. 6136-6145.

Sroka, W.D., Boughton, B.A.ORCID: 0000-0001-6342-9814, Reddy, P., Roessner, U., Słupski, P., Jarzemski, P., Dąbrowska, A., Markuszewski, M.J. and Marszałł, M.P. (2017) Determination of amino acids in urine of patients with prostate cancer and benign prostate growth. European Journal of Cancer Prevention, 26 (2). pp. 131-134.

Selby-Pham, J., Lutz, A., Moreno-Moyano, L.T., Boughton, B.A.ORCID: 0000-0001-6342-9814, Roessner, U. and Johnson, A.A.T. (2017) Diurnal changes in transcript and metabolite levels during the iron deficiency response of rice. Rice, 10 . Article number: 14.

Jarvis, D.E., Ho, Y.S., Lightfoot, D.J., Schmöckel, S.M., Li, B., Borm, T.J.A., Ohyanagi, H., Mineta, K., Michell, C.T., Saber, N., Kharbatia, N.M., Rupper, R.R., Sharp, A.R., Dally, N., Boughton, B.A.ORCID: 0000-0001-6342-9814, Woo, Y.H., Gao, G., Schijlen, E.G.W.M., Guo, X., Momin, A.A., Negrão, S., Al-Babili, S., Gehring, C., Roessner, U., Jung, C., Murphy, K., Arold, S.T., Gojobori, T., van der Linden, C.G., van Loo, E.N., Jellen, E.N., Maughan, P.J. and Tester, M. (2017) Erratum: Corrigendum: The genome of Chenopodium quinoa. Nature, 545 . p. 510.

Andersen, T.B., Martinez-Swatson, K.A., Rasmussen, S.A., Boughton, B.A.ORCID: 0000-0001-6342-9814, Jørgensen, K., Andersen-Ranberg, J., Nyberg, N., Christensen, S.B. and Simonsen, H.T. (2017) Localization and in-Vivo Characterization of Thapsia garganica CYP76AE2 Indicates a Role in Thapsigargin Biosynthesis. Plant Physiology, 174 (1). pp. 56-72.

Rocha, T.L., Soll, C.B., Boughton, B.A.ORCID: 0000-0001-6342-9814, Silva, T.S., Oldach, K., Firmino, A.A.P., Callahan, D.L., Sheedy, J., Silveira, E.R., Carneiro, R.M.D.G., Silva, L.P., Polez, V.L.P., Pelegrini, P.B., Bacic, A., Grossi-de-Sa, M.F. and Roessner, U. (2017) Prospection and identification of nematotoxic compounds from Canavalia ensiformis seeds effective in the control of the root knot nematode Meloidogyne incognita. Biotechnology Research and Innovation, 1 (1). pp. 87-100.

Boughton, B.A.ORCID: 0000-0001-6342-9814 and Hamilton, B. (2017) Spatial metabolite profiling by Matrix-Assisted laser desorption ionization Mass Spectrometry Imaging. Advances in Experimental Medicine and Biology, 965 . pp. 291-321.

Sabermanesh, K., Holtham, L.R., George, J., Roessner, U., Boughton, B.A.ORCID: 0000-0001-6342-9814, Heuer, S., Tester, M., Plett, D.C. and Garnett, T.P. (2017) Transition from a maternal to external nitrogen source in maize seedlings. Journal of Integrative Plant Biology, 59 (4). pp. 261-274.

Jarvis, D.E., Ho, Y.S., Lightfoot, D.J., Schmöckel, S.M., Li, B., Borm, T.J.A., Ohyanagi, H., Mineta, K., Michell, C.T., Saber, N., Kharbatia, N.M., Rupper, R.R., Sharp, A.R., Dally, N., Boughton, B.A.ORCID: 0000-0001-6342-9814, Woo, Y.H., Gao, G., Schijlen, E.G.W.M., Guo, X., Momin, A.A., Negrão, S., Al-Babili, S., Gehring, C., Roessner, U., Jung, C., Murphy, K., Arold, S.T., Gojobori, T., van der Linden, C.G., van Loo, E.N., Jellen, E.N., Maughan, P.J. and Tester, M. (2017) The genome of Chenopodium quinoa. Nature, 542 . pp. 307-312.

Dias, D., Jones, O., Beale, D., Boughton, B.ORCID: 0000-0001-6342-9814, Benheim, D., Kouremenos, K., Wolfender, J-L and Wishart, D. (2016) Current and future perspectives on the structural identification of small molecules in biological systems. Metabolites, 6 (4). Article 46.

Martinez, K., Simonsen, H.T., Rønsted, N., Bundgaard Andersen, T., Barnes, C., Boughton, B.ORCID: 0000-0001-6342-9814 and Cozzi, F. (2016) Domesticating deadly carrots: Predicting the biosynthetic pathway of thapsigargins for the treatment of solid tumors. Planta Medica, 81 (S 01). S1-S381.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Thinagaran, D., Sarabia, D., Bacic, A. and Roessner, U. (2016) Mass spectrometry imaging for plant biology: A review. Phytochemistry Reviews, 15 . pp. 445-488.

Reeve-Johnson, M., Rand, J., Anderson, S., Vankan, D., Dias, D., Boughton, B.ORCID: 0000-0001-6342-9814, De Livera, A., Ishioka, K. and Roessner, U. (2016) Metabolite differences between senior Burmese and Non-Burmese Cats, and associations with measures of glucose metabolism. Journal of Veterinary Internal Medicine, 30 (4). p. 1452.

Wijetunge, C.D., Saeed, I., Boughton, B.A.ORCID: 0000-0001-6342-9814, Spraggins, J.M., Caprioli, R.M., Bacic, A., Roessner, U. and Halgamuge, S.K. (2015) EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. Bioinformatics, 31 (19). pp. 3198-3206.

Wijetunge, C.D., Saeed, I., Boughton, B.A.ORCID: 0000-0001-6342-9814, Spraggins, J.M., Caprioli, R.M., Bacic, A., Roessner, U. and Halgamuge, S.K. (2015) EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. Bioinformatics, 31 (19). pp. 3198-3206.

Boughton, B.ORCID: 0000-0001-6342-9814 and Roessner, U. (2015) Imaging mass spectrometry for spatial metabolomics. Australian Biochemist, 46 (3). pp. 9-12.

Van Assche, R., Temmerman, L., Dias, D.A., Boughton, B.ORCID: 0000-0001-6342-9814, Boonen, K., Braeckman, B.P., Schoofs, L. and Roessner, U. (2015) Metabolic profiling of a transgenic Caenorhabditis elegans Alzheimer model. Metabolomics, 11 . pp. 477-486.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Reddy, P., Boland, M.P., Roessner, U. and Yates, P. (2015) Non-protein amino acids in Australian acacia seed: Implications for food security and recommended processing methods to reduce djenkolic acid. Food Chemistry, 179 . pp. 109-115.

Wijetunge, C.D, Saeed, I., Boughton, B.A.ORCID: 0000-0001-6342-9814, Roessner, U. and Halgamuge, S.K. (2015) A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model. BMC Genomics, 16 . Article number: S12.

Tan, S., Rupasinghe, T.W.T., Tull, D.L., Boughton, B.ORCID: 0000-0001-6342-9814, Oliver, C., McSweeny, C., Gras, S.L. and Augustin, M.A. (2014) Degradation of curcuminoids by in vitro pure culture fermentation. Journal of Agricultural and Food Chemistry, 62 (45). pp. 11005-11015.

Palmer, L., Dias, D., Boughton, B.ORCID: 0000-0001-6342-9814, Roessner, U., Graham, R. and Stangoulis, J.C. (2014) Metabolite profiling of wheat (Triticum aestivum L.) phloem exudate. Plant Methods, 10 (1). Art. 27.

Gholami, M., Boughton, B.A.ORCID: 0000-0001-6342-9814, Fakhari, A.R., Ghanati, F., Mirzaei, H.H., Borojeni, L.Y., Zhang, Y., Breitbach, Z.S., Armstrong, D.W. and Roessner, U. (2014) Metabolomic study reveals a selective accumulation of l-arginine in the d-ornithine treated tobacco cell suspension culture. Process Biochemistry, 49 (1). pp. 140-147.

Novakovic, B., Ryan, J., Pereira, N., Boughton, B.ORCID: 0000-0001-6342-9814, Craig, J.M. and Saffery, R. (2014) Postnatal stability, tissue, and time specific effects of AHRRmethylation change in response to maternal smoking in pregnancy. Epigenetics, 9 (3). pp. 377-386.

McCormick, L.J., Abrahams, B.F., Boughton, B.A.ORCID: 0000-0001-6342-9814, Grannas, M.J., Hudson, T.A. and Robson, R. (2014) Synthesis, Structure and Cation-Binding Properties of Some [4 + 4] Metallocyclic MO22+ (M = Mo or W) Derivatives of 9-Phenyl-2,3,7-trihydroxyfluor-6-one. Inorganic Chemistry, 53 (3). pp. 1721-1728.

Garnett, T., Conn, V., Plett, D., Conn, S., Zanghellini, J., Mackenzie, N., Enju, A., Francis, K., Holtham, L., Roessner, U., Boughton, B.ORCID: 0000-0001-6342-9814, Bacic, A., Shirley, N., Rafalski, A., Dhugga, K., Tester, M. and Kaiser, B.N. (2013) The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle. New Phytologist, 198 (1). pp. 82-94.

Garnett, T., Conn, V., Plett, D., Conn, S., Zanghellini, J., Mackenzie, N., Enju, A., Francis, K., Holtham, L., Roessner, U., Boughton, B.ORCID: 0000-0001-6342-9814, Bacic, A., Shirley, N., Rafalski, A., Dhugga, K., Tester, M. and Kaiser, B.N. (2013) The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle. New Phytologist, 198 (1). pp. 82-94.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Hor, L., Gerrard, J.A. and Hutton, C.A. (2012) 1,3-Phenylene bis(ketoacid) derivatives as inhibitors of Escherichia coli dihydrodipicolinate synthase. Bioorganic & Medicinal Chemistry, 20 (7). pp. 2419-2426.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Dobson, R.C.J. and Hutton, C.A. (2012) The crystal structure of dihydrodipicolinate synthase from Escherichia coli with bound pyruvate and succinic acid semi-aldehyde: Unambiguous resolution of the stereochemistry of the condensation product. Proteins: Structure, Function, and Bioinformatics, 80 (8). pp. 2117-2122.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Callahan, D.L., Silva, C., Bowne, J., Nahid, A., Rupasinghe, T., Tull, D.L., McConville, M.J., Bacic, A. and Roessner, U. (2011) Comprehensive profiling and quantitation of amine group containing metabolites. Analytical Chemistry, 83 (19). pp. 7523-7530.

Abrahams, B.F., Boughton, B.A.ORCID: 0000-0001-6342-9814, FitzGerald, N.J., Holmes, J.L. and Robson, R. (2011) A highly symmetric diamond-like assembly of cyclotricatechylene-based tetrahedral cages. Chemical Communications, 47 (26). pp. 7404-7406.

Shirbin, S.J., Boughton, B.A.ORCID: 0000-0001-6342-9814, Zammit, S.C., Zanatta, S.D., Marcuccio, S.M., Hutton, C.A. and Williams, S.J. (2010) Copper-free palladium-catalyzed Sonogashira and Hiyama cross-couplings using aryl imidazol-1-ylsulfonates. Tetrahedron Letters, 51 (22). pp. 2971-2974.

Stangoulis, J., Tate, M., Graham, R., Bucknall, M., Palmer, L., Boughton, B.ORCID: 0000-0001-6342-9814 and Reid, R. (2010) The mechanism of boron mobility in wheat and canola phloem. Plant Physiology, 153 (2). pp. 876-881.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Dobson, R.C.J., Gerrard, J.A. and Hutton, C.A. (2008) Conformationally constrained diketopimelic acid analogues as inhibitors of dihydrodipicolinate synthase. Bioorganic & Medicinal Chemistry Letters, 18 (2). pp. 460-463.

Boughton, B.A.ORCID: 0000-0001-6342-9814, Griffin, M.D.W., O’Donnell, P.A., Dobson, R.C.J., Perugini, M.A., Gerrard, J.A. and Hutton, C.A. (2008) Irreversible inhibition of dihydrodipicolinate synthase by 4-oxo-heptenedioic acid analogues. Bioorganic & Medicinal Chemistry, 16 (23). pp. 9975-9983.

Abrahams, B.F., Boughton, B.A.ORCID: 0000-0001-6342-9814, Choy, H., Clarke, O., Grannas, M.J., Price, D.J. and Robson, R. (2008) Trianionic organoborate triangles. Inorganic Chemistry, 47 (21). pp. 9797-9803.

Conference Paper

Wijetunge, C.D., Saeed, I., Halgamuge, S.K., Boughton, B.ORCID: 0000-0001-6342-9814 and Roessner, U. (2014) Unsupervised learning for exploring MALDI imaging mass spectrometry 'omics' data. In: 7th International Conference on Information and Automation for Sustainability, 22 - 24 December 2014, Colombo, Sri Lanka

Conference Item

Van Assche, R., Temmerman, L., Dias, D., Boughton, B.ORCID: 0000-0001-6342-9814, Braeckman, B., Schoofs, L. and Roessner, U. (2013) Metabolomics profiling of transgenic Alzheimer Caenorhabditis elegans models. In: Seminar. School of Botany, 22 May 2013, University of Melbourne, VIC.

Book Chapter

Sarabia, L.D., Hill, C.B.ORCID: 0000-0002-6754-5553, Boughton, B.A.ORCID: 0000-0001-6342-9814 and Roessner, U. (2018) Advances of metabolite profiling of plants in challenging environments. In: Roberts, J.A., (ed.) Annual Plant Reviews Online. John Wiley & Sons Ltd.

Boughton, B.A.ORCID: 0000-0001-6342-9814 and Thinagaran, D. (2018) Mass spectrometry imaging (MSI) for plant metabolomics. In: António, C., (ed.) Plant Metabolomics. Humana Press, New York, NY, pp. 241-252.