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Publications: Western Australian State Agricultural Biotechnology Centre

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Number of items at this level: 676.

2022

Aggarwal, S.K., Singh, A., Choudhary, M., Kumar, A., Rakshit, S., Kumar, P., Bohra, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Pangenomics in microbial and crop research: Progress, applications, and perspectives. Genes, 13 (4). Article 598.

Bomireddy, D., Gangurde, S.S., Variath, M.T., Janila, P., Manohar, S.S., Sharma, V., Parmar, S., Deshmukh, D., ReddiSekhar, M., Reddy, D.M., Sudhakar, P., Reddy, B.V.B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Guo, B. and Pandey, M.K. (2022) Discovery of major quantitative trait loci and candidate genes for fresh seed dormancy in groundnut. Agronomy, 12 (2). Article 404.

Chen, H., Yang, Q., Fu, H., Chen, K., Zhao, S., Zhang, C., Cai, T., Wang, L., Lu, W., Dang, H., Gao, M., Li, H., Yuan, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Zhuang, W. (2022) Identification of key gene networks and deciphering transcriptional regulators associated with peanut embryo abortion mediated by calcium deficiency. Frontiers in Plant Science, 13 . Art. 814015.

Doležalová, A., Sládeková, L., Šimoníková, D., Holušová, K., Karafiátová, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Doležel, J. and Hřibová, E. (2022) Karyotype differentiation in cultivated chickpea revealed by Oligopainting fluorescence in situ hybridization. Frontiers in Plant Science, 12 . Art. 791303.

Elango, D., Rajendran, K., Van der Laan, L., Sebastiar, S., Raigne, J., Thaiparambil, N.A., El Haddad, N., Raja, B., Wang, W., Ferela, A., Chiteri, K.O., Thudi, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chopra, S., Singh, A. and Singh, A.K. (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science, 13 . Art. 829118.

Garg, V. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Analysis of Small RNA Sequencing Data in Plants. Methods in molecular biology, 2443 . pp. 497-509.

Kaashyap, M., Ford, R., Mann, A., Varshney, R.K.ORCID: 0000-0002-4562-9131, Siddique, K.H.M. and Mantri, N. (2022) Comparative flower transcriptome network analysis reveals DEGs involved in chickpea reproductive success during salinity. Plants, 11 (3). Art. 434.

Kalema, E.P., Akpo, E., Muricho, G., Ringo, J., Ojiewo, C.O. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Mapping out market drivers of improved variety seed use: The case of sorghum in Tanzania. Heliyon, 8 (1). Art. e08715.

Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Han, Y.ORCID: 0000-0001-6480-0398, Zhang, X‐Q and Li, C. (2022) CRISPR/Cas9 gene editing and natural variation analysis demonstrate the potential for HvARE1 in improvement of nitrogen use efficiency in barley. Journal of Integrative Plant Biology . Early View.

Kulwal, P.L., Mir, R.R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal . Early View.

Pan, R., Buitrago, S., Feng, Z., Abou-Elwafa, S.F., Xu, L., Li, C. and Zhang, W. (2022) HvbZIP21, a Novel Transcription Factor From Wild Barley Confers Drought Tolerance by Modulating ROS Scavenging. Frontiers in Plant Science, 13 . Art. 878459.

Patel, J., Khandwal, D., Choudhary, B., Ardeshana, D., Jha, R.K., Tanna, B., Yadav, S., Mishra, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Siddique, K.H.M. (2022) Differential physio-biochemical and metabolic responses of peanut (Arachis hypogaea L.) under multiple abiotic stress conditions. International Journal of Molecular Sciences, 23 (2). Article 660.

Rai, R.K., Kumar, S.S., Sen Gupta, S., Parasannanavar, D.J., Anish, T.S.N., Barik, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Rajkumar, H. (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition . First View.

Raza, A., Tabassum, J., Zahid, Z., Charagh, S., Bashir, S., Barmukh, R., Khan, R.S.A., Barbosa, F., Zhang, C., Chen, H., Zhuang, W. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science, 12 . Art. 794373.

Sachdeva, S., Bharadwaj, C., Patil, B.S., Pal, M., Roorkiwal, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Agronomic performance of chickpea affected by drought stress at different growth stages. Agronomy, 12 (5). Art. 995.

Saeed, F., Chaudhry, U.K., Bakhsh, A., Raza, A., Saeed, Y., Bohra, A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Moving beyond DNA sequence to improve plant stress responses. Frontiers in Genetics, 13 . Art. 874648.

Samantara, K., Bohra, A., Mohapatra, S.R., Prihatini, R., Asibe, F., Singh, L., Reyes, V.P., Tiwari, A., Maurya, A.K., Croser, J.S., Wani, S.H., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Breeding more crops in less time: A perspective on speed breeding. Biology, 11 (2). Article 275.

Singh, V., Sinha, P., Obala, J., Khan, A.W., Chitikineni, A., Saxena, R.K. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity .

Srivastava, R.K., Yadav, O.P., Kaliamoorthy, S., Gupta, S.K., Serba, D.D., Choudhary, S., Govindaraj, M., Kholová, J., Murugesan, T., Satyavathi, C.T., Gumma, M.K., Singh, R.B., Bollam, S., Gupta, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Breeding Drought-Tolerant Pearl Millet using conventional and genomic approaches: Achievements and prospects. Frontiers in Plant Science, 13 . Art. 781524.

Svatos, K.B.W.ORCID: 0000-0003-1468-0601, Ahmed, Z., Recalde‐Salas, A. and Young, T. (2022) Heuristics‐enhanced geospatial machine learning (SaaS) of an ancient Mediterranean environment. Soil Science Society of America Journal . Early View.

Tayade, A.D., Motagi, B.N., Jadhav, M.P., Nadaf, A.S., Koti, R.V., Gangurde, S.S., Sharma, V., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Bhat, R.S. (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218 (4). Art. 46.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X. and Liu, X. (2022) Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 604 . Art. E12.

Wani, S.H., Choudhary, M., Barmukh, R., Bagaria, P.K., Samantara, K., Razzaq, A., Jaba, J., Ba, M.N. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics .

Webb, R.J., Roberts, A.A., Wylie, S.ORCID: 0000-0002-5639-7460, Kosch, T., Toledo, L.F., Merces, M., Skerratt, L.F. and Berger, L. (2022) Non-detection of mycoviruses in amphibian chytrid fungus (Batrachochytrium dendrobatidis) from Australia. Fungal Biology, 126 (1). pp. 75-81.

Wylie, S.ORCID: 0000-0002-5639-7460 and Li, H. (2022) Historical and scientific evidence for the origin and cultural importance to Australia’s first-nations peoples of the laboratory accession of Nicotiana benthamiana, a model for plant virology. Viruses, 14 (4). Article 771.

Xiao, Y., Liu, H., Du, P., Liang, X., Li, H., Lu, Q., Li, S., Liu, H., Hong, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Chen, X. (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379 . Art. 131970.

Xiao, Y., Liu, H., Lu, Q., Li, H., Liu, Q., Li, S., Liu, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liang, X., Hong, Y. and Chen, X. (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155 . Art. 110993.

2021

Annabi, N., Baker, M., Boettiger, A., Chakraborty, D., Chen, Y., Corbett, K.S., Correia, B., Dahlman, J., de Oliveira, T., Ertuerk, A., Yanik, M.F., Henaff, E., Huch, M., Iliev, I.D., Jacobs, T., Junca, H., Keung, A., Kolodkin-Gal, I., Krishnaswamy, S., Lancaster, M., Macosko, E., Martínez-Núñez, M.A., Miura, K., Molloy, J., Cruz, A.O., Platt, R.J., Posey, A.D., Shao, H., Simunovic, M., Slavov, N., Takebe, T., Vandenberghe, L.H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, J. (2021) Voices of biotech research. Nature Biotechnology, 39 (3). pp. 281-286.

Baswal, A.K., Dhaliwal, H.S., Singh, Z. and Mahajan, B.V.C. (2021) Post-harvest Application of Methyl Jasmonate, 1-Methylcyclopropene and Salicylic Acid Elevates Health-promoting Compounds in Cold-stored ‘Kinnow’ Mandarin (Citrus nobilis Lour x C. deliciosa Tenora) Fruit. International Journal of Fruit Science .

Bayer, P.E., Valliyodan, B., Hu, H.ORCID: 0000-0003-1070-213X, Marsh, J.I., Yuan, Y., Vuong, T.D., Patil, G., Song, Q., Batley, J., Varshney, R.K.ORCID: 0000-0002-4562-9131, Lam, H‐M, Edwards, D. and Nguyen, H.T. (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome, Early View . e20109.

Bellucci, E., Mario Aguilar, O., Alseekh, S., Bett, K., Brezeanu, C., Cook, D., De la Rosa, L., Delledonne, M., Dostatny, D.F., Ferreira, J.J., Geffroy, V., Ghitarrini, S., Kroc, M., Kumar Agrawal, S., Logozzo, G., Marino, M., Mary‐Huard, T., McClean, P., Meglič, V., Messer, T., Muel, F., Nanni, L., Neumann, K., Servalli, F., Străjeru, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Vasconcelos, M.W., Zaccardelli, M., Zavarzin, A., Bitocchi, E., Frontoni, E., Fernie, A.R., Gioia, T., Graner, A., Guasch, L., Prochnow, L., Oppermann, M., Susek, K., Tenaillon, M. and Papa, R. (2021) The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems. The Plant Journal . Early View.

Bhat, J.A., Yu, D., Bohra, A., Ganie, S.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Features and applications of haplotypes in crop breeding. Communications Biology, 4 (1). Art. 1266.

Bhogireddy, S., Mangrauthia, S.K., Kumar, R., Pandey, A.K., Singh, S., Jain, A., Budak, H., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Kudapa, H. (2021) Regulatory non-coding RNAs: A new frontier in regulation of plant biology. Functional & Integrative Genomics, 21 . pp. 313-330.

Bohra, A., Prasad, G., Rathore, A., Saxena, R.K., Naik, S.J.S., Pareek, S., Jha, R., Pazhamala, L., Datta, D., Pandey, G., Tiwari, A., Maurya, A.K., Soren, K.R., Akram, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Singh, N.P. (2021) Global gene expression analysis of pigeonpea with male sterility conditioned by A 2 cytoplasm. The Plant Genome, 14 (3). Art. e20132.

Cao, Chi Thi Hien (2021) Together forever: Molecular biology of a mycovirus-fungus symbiosis. PhD thesis, Murdoch University.

Cao, H., Duncan, O., Islam, S., Zhang, J.ORCID: 0000-0002-1623-4675, Ma, W.ORCID: 0000-0002-1264-866X and Millar, A.H. (2021) Increased wheat protein content via introgression of an HMW glutenin selectively reshapes the grain proteome. Molecular & Cellular Proteomics, 20 . Article 100097.

Commey, L., Tengey, T.K., Cobos, C.J., Dampanaboina, L., Dhillon, K.K., Pandey, M.K., Sudini, H.K., Falalou, H., Varshney, R.K.ORCID: 0000-0002-4562-9131, Burow, M.D. and Mendu, V. (2021) Peanut seed coat acts as a physical and biochemical barrier against Aspergillus flavus infection. Journal of Fungi, 7 (12). Art. 1000.

Fosu-Nyarko, J., Iqbal, S., Brigg, F. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2021) Functional characterization of target genes associated with insecticide resistance of the green peach aphid, Myzus persicae. Methods in Molecular Biology, 2360 . pp. 187-208.

Francki, M.G., Stainer, G.S., Walker, E., Rebetzke, G.J., Stefanova, K.T. and French, R.J. (2021) Phenotypic evaluation and genetic analysis of seedling emergence in a global collection of wheat genotypes (Triticum aestivum L.) under limited water availability. Frontiers in Plant Science, 12 . Art. 796176.

Francki, M.G., Walker, E., McMullan, C.J. and Morris, W.G. (2021) Evaluation of Septoria Nodorum Blotch (SNB) resistance in glumes of wheat (Triticum aestivum L.) and the genetic relationship with foliar disease response. Frontiers in Genetics, 12 . Art. 681768.

Garg, V., Dudchenko, O., Wang, J., Khan, A.W., Gupta, S., Kaur, P., Han, K., Saxena, R.K., Kale, S.M., Pham, M., Yu, J., Chitikineni, A., Zhang, Z., Fan, G., Lui, C., Valluri, V., Meng, F., Bhandari, A., Liu, X., Yang, T., Chen, H., Valliyodan, B., Roorkiwal, M., Shi, C., Yang, H.B., Durand, N.C., Pandey, M.K., Li, G., Barmukh, R., Wang, X., Chen, X., Lam, H-M, Jiang, H., Zong, X., Liang, X., Liu, X., Liao, B., Guo, B., Jackson, S., Nguyen, H.T., Zhuang, W., Shubo, W., Wang, X., Aiden, E.L., Bennetzen, J.L. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research . In Press.

Getahun, T., Tesfaye, K., Fikre, A., Haileslassie, T., Chitikineni, A., Thudi, M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular genetic diversity and population structure in Ethiopian chickpea germplasm accessions. Diversity, 13 (6). Art. 247.

Ghatak, A., Schindler, F., Bachmann, G., Engelmeier, D., Bajaj, P., Brenner, M., Fragner, L., Varshney, R.K.ORCID: 0000-0002-4562-9131, Subbarao, G.V., Chaturvedi, P. and Weckwerth, W. (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils, 58 . pp. 291-306.

Greay, T.L., Evasco, K.L., Evans, M.L., Oskam, C.L., Magni, P.A., Ryan, U.M.ORCID: 0000-0003-2710-9324 and Irwin, P.J.ORCID: 0000-0002-0006-8262 (2021) Illuminating the bacterial microbiome of Australian ticks with 16S and Rickettsia-specific next-generation sequencing. Current Research in Parasitology & Vector-Borne Diseases, 1 . Art. 100037.

He, X., Han, Z., Yin, H., Chen, F., Dong, Y., Zhang, L., Lu, X., Zeng, J., Ma, W.ORCID: 0000-0002-1264-866X and Mu, P. (2021) High-throughput sequencing-based identification of miRNAs and their target mRNAs in wheat variety Qing Mai 6 under salt stress condition. Frontiers in Genetics, 12 . Article 724527.

Iqbal, S., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Fosu-Nyarko, J. (2021) RNA interference of an orthologue of Dicer of Meloidogyne incognita alludes to the gene’s importance in nematode development. Scientific Reports, 11 (1). Article 11156.

Islam, S., Zhang, J.ORCID: 0000-0002-1623-4675, Zhao, Y., She, M. and Ma, W.ORCID: 0000-0002-1264-866X (2021) Genetic regulation of the traits contributing to wheat nitrogen use efficiency. Plant Science, 303 . Article 110759.

Jha, U.C., Nayyar, H., Palakurthi, R., Jha, R., Valluri, V., Bajaj, P., Chitikineni, A., Singh, N.P., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) Major QTLs and potential candidate genes for heat stress tolerance identified in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 655103.

Jia, Y., Westcott, S., He, T., McFawn, L.A., Angessa, T., Hill, C.ORCID: 0000-0002-6754-5553, Tan, C., Zhang, X., Zhou, G. and Li, C. (2021) Genome-wide association studies reveal QTL hotspots for grain brightness and black point traits in barley. The Crop Journal, 9 (1). pp. 154-167.

Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Han, Y.ORCID: 0000-0001-6480-0398, Zhang, X-Q, Dang, H.V., Angessa, T.T. and Li, C. (2021) Using chlorate as an analogue to nitrate to identify candidate genes for nitrogen use efficiency in barley. Molecular Breeding, 41 (8). Article 47.

Kumar, A., Bohra, A., Mir, R.R., Sharma, R., Tiwari, A., Khan, M.A. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Next generation breeding in pulses: Present status and future directions. Crop Breeding and Applied Biotechnology, 21 . Art. e394221S13.

Kumar, A., Rani, M., Mani, S., Shah, P., Singh, D.B., Kudapa, H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Nutritional significance and Antioxidant-Mediated antiaging effects of Finger Millet: Molecular insights and prospects. Frontiers in Sustainable Food Systems, 5 . Art. 684318.

Kushwah, A., Bhatia, D., Singh, I., Thudi, M., Singh, G., Bindra, S., Vij, S., Gill, B.S., Bharadwaj, C., Singh, S. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Identification of stable heat tolerance QTLs using inter-specific recombinant inbred line population derived from GPF 2 and ILWC 292. PLoS ONE, 16 (8). Art. e0254957.

Li, D.A., Walker, E. and Francki, M. (2021) Genes associated with foliar resistance to Septoria nodorum blotch of hexaploid wheat (Triticum aestivum L.). International Journal of Molecular Sciences, 22 (11). Article 5580.

Li, W., Huang, L., Liu, N., Pandey, M.K., Chen, Y., Cheng, L., Guo, J., Yu, B., Luo, H., Zhou, X., Huai, D., Chen, W., Yan, L., Wang, X., Lei, Y., Varshney, R.K.ORCID: 0000-0002-4562-9131, Liao, B. and Jiang, H. (2021) Key regulators of sucrose metabolism identified through comprehensive comparative transcriptome analysis in peanuts. International Journal of Molecular Sciences, 22 (14). Art. 7266.

Liu, H., Hu, D., Du, P., Wang, L., Liang, X., Li, H., Lu, Q., Li, S., Liu, H., Chen, X., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Hong, Y. (2021) Single‐cell RNA‐seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut ( Arachis hypogaea L.). Plant Biotechnology Journal, 19 (11). pp. 2261-2276.

Liu, Q., Yang, F., Zhang, J.ORCID: 0000-0002-1623-4675, Liu, H., Rahman, S., Islam, S., Ma, W.ORCID: 0000-0002-1264-866X and She, M. (2021) Application of CRISPR/Cas9 in crop quality improvement. International Journal of Molecular Sciences, 22 (8). Article 4206.

Manchikatla, P.K., Kalavikatte, D., Mallikarjuna, B.P., Palakurthi, R., Khan, A.W., Jha, U.C., Bajaj, P., Singam, P., Chitikineni, A., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Thudi, M. (2021) MutMap approach enables rapid identification of candidate genes and development of markers associated with early flowering and enhanced seed size in chickpea (Cicer arietinum L.). Frontiers in Plant Science, 12 . Art. 688694.

Montesinos-López, O.A., Montesinos-López, A., Mosqueda-González, B.A., Bentley, A.R., Lillemo, M., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Crossa, J. (2021) A new deep learning calibration method enhances Genome-Based prediction of continuous crop traits. Frontiers in Genetics, 12 . Art. 798840.

Montesinos-López, O.A., Montesinos-López, J.C., Montesinos-López, A., Ramírez-Alcaraz, J.M., Poland, J., Singh, R., Dreisigacker, S., Crespo, L., Mondal, S., Govidan, V., Juliana, P., Espino, J.H., Shrestha, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Crossa, J. and Lipka, A. (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3 Genes|Genomes|Genetics, 12 (2).

Mwando, E., Angessa, T.T., Han, Y.ORCID: 0000-0001-6480-0398, Zhou, G. and Li, C. (2021) Quantitative trait loci mapping for vigour and survival traits of barley seedlings after germinating under salinity stress. Agronomy, 11 (1). Article 103.

Mwando, E., Han, Y.ORCID: 0000-0001-6480-0398, Angessa, T., Zhang, X-Q and Li, C. (2021) Fine-mapping and characterisation of genes on barley (Hordeum vulgare) chromosome 2H for salinity stress tolerance during germination. The Crop Journal . In Press.

Nguyen, D.T., Hayes, J.E., Atieno, J., Li, Y., Baumann, U., Pattison, A., Bramley, H., Hobson, K.A., Roorkiwal, M., Varshney, R.K.ORCID: 0000-0002-4562-9131, Colmer, T.D. and Sutton, T. (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics .

Palakurthi, R., Jayalakshmi, V., Kumar, Y., Kulwal, P., Yasin, M., Kute, N.S., Laxuman, C., Yeri, S., Vemula, A., Rathore, A., Samineni, S., Soren, K.R., Mondal, B., Dixit, G.P., Bharadwaj, C., Chaturvedi, S.K., Gaur, P.M., Roorkiwal, M., Thudi, M., Singh, N.P. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Translational Chickpea Genomics Consortium to accelerate genetic gains in chickpea (Cicer arietinum L.). Plants, 10 (12). Article 2583.

Palermo, C.J., Morgan, D.L., Beatty, S.J.ORCID: 0000-0003-2620-2826, Elliot, A. and Greay, T.L. (2021) The Asian fish tapeworm (Schyzocotyle acheilognathi) discovered in Western Australia may pose a threat to the health of endemic native fishes. Journal of Helminthology, 95 . Art. e60.

Parmar, S., Deshmukh, D.B., Kumar, R., Manohar, S.S., Joshi, P., Sharma, V., Chaudhari, S., Variath, M.T., Gangurde, S.S., Bohar, R., Singam, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Janila, P. and Pandey, M.K. (2021) Single seed-based high-throughput genotyping and rapid generation advancement for accelerated groundnut genetics and breeding research. Agronomy, 11 (6). Art. 1226.

Pazhamala, L.T., Kudapa, H., Weckwerth, W., Millar, A.H. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Systems biology for crop improvement. The Plant Genome, 14 (2). Art. e20098.

Philip, S.M., Fosu‐Nyarko, J., Iqbal, S., Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2021) In‐plant activation of root‐specific expression of a cytotoxic gene disrupts the development of the root‐knot nematode, Meloidogyne javanica. Plant Pathology .

Robertson, B.C., He, T. and Li, C. (2021) The genetic control of stomatal development in barley: New solutions for enhanced water-use efficiency in drought-prone environments. Agronomy, 11 (8). Article 1670.

Roorkiwal, M., Pandey, S., Thavarajah, D., Hemalatha, R. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Molecular mechanisms and biochemical pathways for micronutrient acquisition and storage in legumes to support biofortification for nutritional security. Frontiers in Plant Science, 12 . Art. 682842.

Roy, N., Islam, S., Al-Habbar, Z., Yu, Z., Liu, H., Lafiandra, D., Masci, S., Lu, M., Sultana, N. and Ma, W.ORCID: 0000-0002-1264-866X (2021) Contribution to breadmaking performance of two different HMW glutenin 1Ay alleles expressed in hexaploid wheat. Journal of Agricultural and Food Chemistry, 69 (1). pp. 36-44.

Saradadevi, G.P., Das, D., Mangrauthia, S.K., Mohapatra, S., Chikkaputtaiah, C., Roorkiwal, M., Solanki, M., Sundaram, R.M., Chirravuri, N.N., Sakhare, A.S., Kota, S., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Mohannath, G. (2021) Genetic, epigenetic, genomic and microbial approaches to enhance salt tolerance of plants: A comprehensive review. Biology, 10 (12). Art. 1255.

Saradadevi, R., Mukankusi, C., Li, L., Amongi, W., Mbiu, J.P., Raatz, B., Ariza, D., Beebe, S., Varshney, R.K.ORCID: 0000-0002-4562-9131, Huttner, E., Kinghorn, B., Banks, R., Rubyogo, J.C., Siddique, K.H.M. and Cowling, W.A. (2021) Multivariate genomic analysis and optimal contributions selection predicts high genetic gains in cooking time, iron, zinc, and grain yield in common beans in East Africa. The Plant Genome, 14 (3). Art. e20156.

Saxena, R.K., Jiang, Y., Khan, A.W., Zhao, Y., Kumar Singh, V., Bohra, A., Sonappa, M., Rathore, A., Kumar, C.V.S., Saxena, K., Reif, J. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Characterization of heterosis and genomic prediction‐based establishment of heterotic patterns for developing better hybrids in pigeonpea. The Plant Genome, 14 (3). Art. e20125.

Sharma, V., Gupta, P., Priscilla, K., SharanKumar, S., Hangargi, B., Veershetty, A., Ramrao, D.P., Suresh, S., Narasanna, R., Naik, G.R., Kumar, A., Guo, B., Zhuang, W., Varshney, R.K.ORCID: 0000-0002-4562-9131, Pandey, M.K. and Kumar, R. (2021) Metabolomics intervention towards better understanding of plant traits. Cells, 10 (2). Article 346.

Sinha, P., Singh, V.K., Bohra, A., Kumar, A., Reif, J.C. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics, 134 . pp. 1829-1843.

Soni, P., Pandey, A.K., Nayak, S.N., Pandey, M.K., Tolani, P., Pandey, S., Sudini, H.K., Bajaj, P., Fountain, J.C., Singam, P., Guo, B. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Global transcriptome profiling identified transcription factors, biological process, and associated pathways for pre-harvest aflatoxin contamination in groundnut. Journal of Fungi, 7 (6). p. 413.

Sultana, N., Islam, S., Juhász, A. and Ma, W.ORCID: 0000-0002-1264-866X (2021) Wheat leaf senescence and its regulatory gene network. The Crop Journal, 9 (4). pp. 703-717.

Svatos, Karl Benton WestORCID: 0000-0003-1468-0601 (2021) Data-driven, Mediterranean, A.I. simulations and the ethical implications of embedded qualitative bias in digital twin deepfake games. PhD thesis, Murdoch University.

Thudi, M., Chen, Y., Pang, J., Kalavikatte, D., Bajaj, P., Roorkiwal, M., Chitikineni, A., Ryan, M.H., Lambers, H., Siddique, K.H.M. and Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) Novel genes and genetic loci associated with root morphological traits, phosphorus-acquisition efficiency and phosphorus-use efficiency in chickpea. Frontiers in Plant Science, 12 . Art. 636973.

Tokala, V.Y., Singh, Z. and Kyaw, P.N. (2021) Postharvest fruit quality of apple influenced by ethylene antagonist fumigation and ozonized cold storage. Food Chemistry, 341 . Art. 128293.

Tong, C., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhou, G., Zhang, X-Q, Jia, Y. and Li, C. (2021) Opportunities for improving waterlogging tolerance in cereal crops—Physiological traits and genetic mechanisms. Plants, 10 (8). Article 1560.

Varshney, R.K.ORCID: 0000-0002-4562-9131 (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome, 14 (3). Art. e20178.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W., Chitikineni, A., Lam, H-M, Hickey, L.T., Croser, J., Edwards, D., Farooq, M., Crossa, J., Weckwerth, W., Millar, A.H., Kumar, A., Bevan, M.W. and Siddique, K.H.M. (2021) Rapid delivery systems for future food security. Nature Biotechnology, 39 . pp. 1179-1181.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W.A., Chitikineni, A., Lam, H-M, Hickey, L.T., Croser, J.S., Bayer, P.E., Edwards, D., Crossa, J., Weckwerth, W., Millar, H., Kumar, A., Bevan, M.W. and Siddique, K.H.M. (2021) Fast-forward breeding for a food-secure world. Trends in Genetics, 37 (12). pp. 1124-1136.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Bohra, A., Yu, J., Graner, A., Zhang, Q. and Sorrells, M.E. (2021) Designing future crops: Genomics-Assisted breeding comes of age. Trends in Plant Science, 26 (6). pp. 631-649.

Varshney, R.K.ORCID: 0000-0002-4562-9131, Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquin, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X. and Liu, X. (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature .

Wang, P., Zhou, G., Jian, J., Yang, H., Renshaw, D., Aubert, M.K., Clements, J., He, T., Sweetingham, M. and Li, C. (2021) Whole‐genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow‐leafed lupin. The Plant Journal . Early View.

Wu, L., Han, X., Islam, S., Zhai, S., Zhao, H., Zhang, G., Cui, G., Zhang, F., Han, W., You, X., Ju, Z., Lv, P., Zhou, J., Gao, Q., Cui, B., Wu, Y., Yang, Z., Liu, Q., Yang, F., Zhang, J.ORCID: 0000-0002-1623-4675 and Liu, H. (2021) Effects of sowing mode on lodging resistance and grain yield in winter wheat. Agronomy, 11 (7). Article 1378.

Xiao, Y., Liu, H., Li, H., Liu, Q., Lu, Q., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chen, X. and Hong, Y. (2021) Widely targeted metabolomics characterizes the dynamic changes of chemical profile in postharvest peanut sprouts grown under the dark and light conditions. LWT, 152 . Art. 112283.

Xu, W., Wang, P., Yuan, L., Chen, X. and Hu, X. (2021) Effects of application methods of boron on tomato growth, fruit quality and flavor. Horticulturae, 7 (8). Art. 223.

Yadav, O.P., Gupta, S.K., Govindaraj, M., Sharma, R., Varshney, R.K.ORCID: 0000-0002-4562-9131, Srivastava, R. and Mahala, R.S. (2021) Genetic gains in Pearl Millet in India: Insights into historic breeding strategies and future perspective. Frontiers in Plant Science, 12 . Art. 645038.

Yang, F., Liu, Q., Wang, Q., Yang, N., Li, J., Wang, H., Liu, Z., Yang, S., Wang, Y., Zhang, J., Liu, H., Fan, X., Ma, W.ORCID: 0000-0002-1264-866X, Yang, W. and Zhou, Y. (2021) Characterization of the durum wheat-Aegilops tauschii 4D(4B) disomic substitution line YL-443 with superior characteristics of high yielding and stripe rust resistance. Frontiers in Plant Science, 12 . Article 745290.

Zandberg, J.D., Reeve, W.G., Brigg, F., McConnell, S.M. and Spencer, P.B.S.ORCID: 0000-0002-4938-2615 (2021) The complete mitochondrial genome of the vulnerable Australian crest-tailed mulgara (Dasycercus cristicauda). Mitochondrial DNA: Part B, 6 (4). pp. 1483-1485.

Zhang, J.ORCID: 0000-0002-1623-4675, Islam, S., Zhao, Y., Anwar, M., Alhabbar, Z., She, M., Yang, R.ORCID: 0000-0003-2563-2015, Juhász, A., Tang, G., Chen, J., Liu, H., Jiang, Y., Zhai, S., Hu, X., Rong, J., Zhang, Y., Qin, Y., Liu, Q., Yu, Z., Zhang, Y., Balotf, S., Dowla, M., Afrin, S., Roy, N., Mallik, M.R., Us Saieed, M.A., Rahman, S., Sultana, N., Ahmed, S.A., Florides, C., Chen, K., Sharma, D., Height, N., Biddulph, B., Lu, M., Mayer, J.E. and Ma, W.ORCID: 0000-0002-1264-866X (2021) Non-escaping frost tolerant QTL linked genetic loci at reproductive stage in six wheat DH populations. The Crop Journal, 10 (1). pp. 147-165.

Zhang, S., Ghatak, A., Bazargani, M.M., Bajaj, P., Varshney, R.K.ORCID: 0000-0002-4562-9131, Chaturvedi, P., Jiang, D. and Weckwerth, W. (2021) Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process. The Plant Journal .

Zhang, X., Pandey, M.K., Wang, J., Zhao, K., Ma, X., Li, Z., Zhao, K., Gong, F., Guo, B., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Yin, D. (2021) Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations. Genome Biology, 22 (1). Art. 315.

Zhao, C., He, L., Xia, H., Zhou, X., Geng, Y., Hou, L., Li, P., Li, G., Zhao, S., Ma, C., Tang, R., Pandey, M.K., Varshney, R.K.ORCID: 0000-0002-4562-9131 and Wang, X. (2021) De novo full length transcriptome analysis of Arachis glabrata provides insights into gene expression dynamics in response to biotic and abiotic stresses. Genomics, 113 (3). pp. 1579-1588.

2020

Baswal, A.K., Dhaliwal, H.S., Singh, Z. and Mahajan, B.V.C. (2020) Influence of Types of Modified Atmospheric Packaging (MAP) Films on Cold-Storage Life and Fruit Quality of ‘Kinnow’ Mandarin (Citrus nobilis Lour X C. deliciosa Tenora). International Journal of Fruit Science . pp. 1-18.

Baswal, A.K., Dhaliwal, H.S., Singh, Z., Mahajan, B.V.C., Kalia, A. and Gill, K.S. (2020) Influence of carboxy methylcellulose, chitosan and beeswax coatings on cold storage life and quality of Kinnow mandarin fruit. Scientia Horticulturae, 260 .

Begum, F., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Fosu-Nyarko, J. (2020) Assessment of the pest status of Pratylenchus curvicauda and ultrastructural changes in roots of infected wheat and barley. Plant Pathology, 69 (8). pp. 1574-1588.

Chakraborty, Anindita (2020) Development of Cas9-expressing plants to study gene function. PhD thesis, Murdoch University.

Dastogeer, K.M.G., Chakraborty, A., Sarker, M.S.A and Akter, M.A. (2020) Roles of fungal endophytes and viruses in mediating drought stress tolerance in plants. International Journal of Agriculture and Biology, 24 (6). pp. 1497-1512.

Francki, M.G., Walker, E., McMullan, C. J. and Morris, W.G. (2020) Multi-Location Evaluation of Global Wheat Lines Reveal Multiple QTL for Adult Plant Resistance to Septoria Nodorum Blotch (SNB) Detected in Specific Environments and in Response to Different Isolates. Frontiers in Plant Science, 11 . Art. 771.

Ghosh, P.R., Fawcett, D., Platten, M., Sharma, S.B., Fosu-Nyarko, J. and Poinern, G.E.J. (2020) Sustainable green chemical synthesis of discrete, well-dispersed silver nanoparticles with bacteriostatic properties from carrot extracts aided by polyvinylpyrrolidone. AIMS Materials Science, 7 (3). pp. 269-287.

Han, Y.ORCID: 0000-0001-6480-0398, Broughton, S., Liu, L., Zhang, X-Q, Zeng, J., He, X. and Li, C. (2020) Highly efficient and genotype-independent barley gene-editing based on anther culture. Plant Communications, 2 (2). Art.100082.

He, T. and Li, C. (2020) Harness the power of genomic selection and the potential of germplasm in crop breeding for global food security in the era with rapid climate change. The Crop Journal, 8 (5). pp. 688-700.

He, Z., Rasheed, A., Xia, X. and Ma, W.ORCID: 0000-0002-1264-866X (2020) Molecular marker development and application for improving qualities in bread wheat. In: Igrejas, G., Ikeda, T.M. and Guzmán, C., (eds.) Wheat Quality For Improving Processing And Human Health. Springer, pp. 323-345.

Iqbal, S., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2020) Attempt to silence genes of the RNAi pathways of the root-knot nematode, Meloidogyne incognita results in diverse responses including increase and no change in expression of some genes. Frontiers in Plant Science, 11 . Article 328.

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., Ens, J., Zhang, X-Q, Angessa, T.T., Zhou, G., Tan, C., Hill, C.ORCID: 0000-0002-6754-5553, Wang, P., Schreiber, M., Boston, L.B., Plott, C., Jenkins, J., Guo, Y., Fiebig, A., Budak, H., Xu, D., Zhang, J., Wang, C., Grimwood, J., Schmutz, J., Guo, G., Zhang, G., Mochida, K., Hirayama, T., Sato, K., Chalmers, K.J., Langridge, P., Waugh, R., Pozniak, C.J., Scholz, U., Mayer, K.F.X., Spannagl, M., Li, C., Mascher, M. and Stein, N. (2020) The barley pan-genome reveals the hidden legacy of mutation breeding. Nature, 588 . pp. 284-289.

Jia, Y., Selva, C., Zhang, Y., Li, B., McFawn, L.A., Broughton, S., Zhang, X., Westcott, S., Wang, P., Tan, C., Angessa, T., Xu, Y., Whitford, R. and Li, C. (2020) Uncovering the evolutionary origin of blue anthocyanins in cereal grains. The Plant Journal, 101 (5). pp. 1057-1074.

Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Han, Y.ORCID: 0000-0001-6480-0398, Zhang, X-Q and Li, C. (2020) Advances in understanding the molecular mechanisms and potential genetic improvement for nitrogen use efficiency in barley. Agronomy, 10 (5). Article 662.

Karunarathne, S.D.ORCID: 0000-0003-4059-0212, Han, Y.ORCID: 0000-0001-6480-0398, Zhang, X-Q, Zhou, G., Hill, C.B.ORCID: 0000-0002-6754-5553, Chen, K., Angessa, T. and Li, C. (2020) Genome-wide association study and identification of candidate genes for nitrogen use efficiency in barley (Hordeum vulgare L.). Frontiers in Plant Science, 11 . Article 571912.

Keatley, S., Botero, A., Fosu-Nyarko, J., Pallant, L., Northover, A. and Thompson, R.C.A. (2020) Species-level identification of trypanosomes infecting Australian wildlife by High-Resolution Melting - Real Time Quantitative Polymerase Chain Reaction (HRM-qPCR). International Journal for Parasitology: Parasites and Wildlife, 13 . pp. 261-268.

Mwando, E., Han, Y.ORCID: 0000-0001-6480-0398, Angessa, T.T., Zhou, G., Hill, C.B.ORCID: 0000-0002-6754-5553, Zhang, X-Q and Li, C. (2020) Genome-wide association study of salinity tolerance during germination in barley (Hordeum vulgare L.). Frontiers in Plant Science, 11 . Article 118.

Nguyen, D.Q., Li, H., Tran, T.T., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2020) Four Tulasnella taxa associated with populations of the Australian evergreen terrestrial orchid Cryptostylis ovata. Fungal Biology, 124 (1). pp. 24-33.

Rahman, S., Islam, S., Yu, Z., She, M., Nevo, E. and Ma, W.ORCID: 0000-0002-1264-866X (2020) Current progress in understanding and recovering the wheat genes lost in evolution and domestication. International Journal of Molecular Sciences, 21 (16). Article 5836.

Sultana, N., Islam, S., Juhász, A., Yang, R.ORCID: 0000-0003-2563-2015, She, M., Al-Habbar, Z., Zhang, J.ORCID: 0000-0002-1623-4675 and Ma, W.ORCID: 0000-0002-1264-866X (2020) Transcriptomic study for identification of major nitrogen stress responsive genes in Australian bread wheat cultivars. Frontiers in Genetics, 11 . Article 583785.

Sun, D., Ji, X., Jia, Y., Huo, D., Si, S., Zeng, L., Zhang, Y. and Niu, L. (2020) LreEF1A,, a translation elongation factor from Lilium regale, Is pivotal for cucumber mosaic virus and tobacco rattle virus infections and tolerance to salt and drought. International Journal of Molecular Sciences, 21 (6). Article 2083.

Tokala, V.Y., Singh, Z. and Kyaw, P.N. (2020) Fumigation and dip treatments with 1H-cyclopropabenzene and 1H-cyclopropa[b]naphthalene suppress ethylene production and maintain fruit quality of cold-stored ‘Cripps Pink’ apple. Scientia Horticulturae, 272 . Art. 109597.

Tran, T.T., Li, H., Nguyen, D.Q., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2020) Comparisons between genetic diversity, virulence and colony morphology of Monilinia fructicola and Monilinia laxa isolates. Journal of Plant Pathology, 102 . pp. 743-751.

Valouzi, H., Hashemi, S.S., Wylie, S.J.ORCID: 0000-0002-5639-7460, Ahadiyat, A. and Golnaraghi, A. (2020) Wisteria vein mosaic virus detected for the first time in Iran from an unknown host by analysis of aphid vectors. Plant Pathology Journal, 36 (1). pp. 87-97.

Wang, Y., Xu, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Zhou, Y., Wallwork, H., Zhou, G., Broughton, S., Zhang, X-Q, Tan, C., Westcott, S., Moody, D., Sun, D., Loughman, R., Zhang, W. and Li, C. (2020) Fine mapping QSc.VR4, an effective and stable scald resistance locus in barley (Hordeum vulgare L.), to a 0.38-Mb region enriched with LRR-RLK and GLP genes. Theoretical and Applied Genetics .

Watt, C., Zhou, G., Angessa, T.T., Moody, D. and Li, C. (2020) A novel polymorphism in the 5′ UTR of HvDEP1 is associated with grain length and 1000-grain weight in barley (Hordeum vulgare). Crop and Pasture Science, 71 (8). pp. 752-759.

Watt, C., Zhou, G., McFawn, L-A and Li, C. (2020) Fine mapping qGL2H, a major locus controlling grain length in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 133 . pp. 2095-2103.

Zhang, Y., Hu, X., Juhász, A., Islam, S., Yu, Z., Zhao, Y., Lin, G., Ding, W. and Ma, W.ORCID: 0000-0002-1264-866X (2020) Characterising avenin-like proteins (ALPs) from albumin/globulin fraction of wheat grains by RP-HPLC, SDS-PAGE, and MS/MS peptides sequencing. BMC Plant Biology, 20 . Article number: 45.

2019

Akther, Jebin (2019) Stability and heritability of RNAi in generations of transgenic plants and nematodes. PhD thesis, Murdoch University.

Begum, F., Fosu-Nyarko, J., Sharma, S., MacLeod, B., Collins, S. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2019) Serendipitous identification of Pratylenchus curvicauda from the grainbelt of Western Australia. Journal of Nematology, 51 . pp. 1-15.

Cao, C., Li, H., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2019) Challenges to elucidating how endornaviruses influence fungal hosts: Creating mycovirus-free isogenic fungal lines and testing them. Journal of Virological Methods, 274 . Article 113745.

Feng, K., Cui, L., Wang, L., Shan, D., Tong, W., Deng, P., Yan, Z., Wang, M., Zhang, H., Wu, X., He, W., Zhou, X., Ji, J., Zhang, G., Mao, L., Karafiátová, M., Šimková, H., Doležel, J., Du, X., Zhao, S., Luo, M‐C, Han, D., Zhang, C., Kang, Z., Appels, R., Edwards, D., Nie, X. and Weining, S. (2019) The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat. Plant Biotechnology Journal, 18 (3). pp. 732-742.

Greay, T.L., Gofton, A.W., Zahedi, A.ORCID: 0000-0002-0165-3797, Paparini, A.ORCID: 0000-0002-1105-5184, Linge, K.L., Joll, C.A. and Ryan, U.M.ORCID: 0000-0003-2710-9324 (2019) Evaluation of 16S next-generation sequencing of hypervariable region 4 in wastewater samples: An unsuitable approach for bacterial enteric pathogen identification. Science of The Total Environment, 670 . pp. 1111-1124.

Greay, T.L., Zahedi, A.ORCID: 0000-0002-0165-3797, Krige, A-S, Owens, J.M., Rees, R.L., Ryan, U.M.ORCID: 0000-0003-2710-9324, Oskam, C.L. and Irwin, P.J.ORCID: 0000-0002-0006-8262 (2019) Response to the Letter to the Editor by Harris. Parasites & Vectors, 12 . Article number: 178.

Harikrishna, J.A., Othman, R.Y., Mispan, M.S., Iqbal, S., Han, Y.ORCID: 0000-0001-6480-0398 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2019) Biosafety of RNA silencing and genome editing technologies in crop plants: Malaysian and Australian research perspectives. Asia Pacific Journal of Molecular Biology and Biotechnology, 27 (2). pp. 64-69.

He, T., Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., Zhang, X-Q, Chen, K., Moody, D., Telfer, P., Westcott, S. and Li, C. (2019) Gene-set association and epistatic analyses reveal complex gene interaction networks affecting flowering time in a worldwide barley collection. Journal of Experimental Botany, 70 (20). pp. 5603-5616.

Hill, C.B.ORCID: 0000-0002-6754-5553, Angessa, T.T., McFawn, L-A, Wong, D., Tibbits, J., Zhang, X-Q, Forrest, K., Moody, D., Telfer, P., Westcott, S., Diepeveen, D.ORCID: 0000-0002-1535-8019, Xu, Y., Tan, C., Hayden, M. and Li, C. (2019) Hybridisation-based target enrichment of phenology genes to dissect the genetic basis of yield and adaptation in barley. Plant Biotechnology Journal, 17 (5). pp. 932-944.

Hill, C.B.ORCID: 0000-0002-6754-5553, Wong, D., Tibbits, J., Forrest, K., Hayden, M., Zhang, X-Q, Westcott, S., Angessa, T.T. and Li, C. (2019) Targeted enrichment by solution-based hybrid capture to identify genetic sequence variants in barley. Scientific Data, 6 . Article number: 12.

Islam, S., Yu, Z., She, M., Zhao, Y. and Ma, W.ORCID: 0000-0002-1264-866X (2019) Wheat gluten protein and its impacts on wheat processing quality. Frontiers of Agricultural Science and Engineering, 6 (3). pp. 279-287.

Jia, Y., Li, B., Zhang, Y., Zhang, X., Xu, Y. and Li, C. (2019) Evolutionary dynamic analyses on monocot flavonoid 3′-hydroxylase gene family reveal evidence of plant-environment interaction. BMC Plant Biology, 19 (1).

Rehman, M., Singh, Z. and Khurshid, T. (2019) Nitric oxide fumigation alleviates chilling injury and regulates fruit quality in sweet orange stored at different cold temperatures. Australian Journal of Crop Science, 13 (12). pp. 1975-1982.

Roy, N., Islam, S., Yu, Z., Lu, M., Lafiandra, D., Zhao, Y., Anwar, M., Mayer, J.E. and Ma, W.ORCID: 0000-0002-1264-866X (2019) Introgression of an expressed HMW 1Ay glutenin subunit allele into bread wheat cv. Lincoln increases grain protein content and breadmaking quality without yield penalty. Theoretical and Applied Genetics, 133 . pp. 517-528.

Sun, D., Zhang, X., Zhang, Q., Ji, X., Jia, Y., Wang, H., Niu, L. and Zhang, Y. (2019) Comparative transcriptome profiling uncovers a Lilium regale NAC transcription factor, LrNAC35 , contributing to defence response against cucumber mosaic virus and tobacco mosaic virus. Molecular Plant Pathology . Early View.

Tran, T.T., Li, H., Nguyen, D.Q., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2019) Co-infection with three mycoviruses stimulates growth of a Monilinia fructicola isolate on nutrient medium, but does not induce hypervirulence in a natural host. Viruses, 11 (1). Article 89.

Tran, T.T., Li, H., Nguyen, D.Q., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2019) Genotypic structure of Monilinia populations in Western Australia two decades after incursion. Australasian Plant Pathology, 48 (2). pp. 167-178.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Tran, T.T., Nguyen, D.Q., Koh, S.H., Chakraborty, A., Xu, W., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Li, H. (2019) A virome from ornamental flowers in an Australian rural town. Archives of Virology, 164 (9). pp. 2255-2263.

Ye, L., Wang, Y., Long, L., Luo, H., Shen, Q., Broughton, S., Wu, D., Shu, X., Dai, F., Li, C. and Zhang, G. (2019) A Trypsin Family protein gene controls tillering and leaf shape in barley. Plant Physiology, 181 (2). pp. 701-713.

Yu, Z., Peng, Y., Islam, S., She, M., Lu, M., Lafiandra, D., Roy, N., Juhász, A., Yan, G. and Ma, W.ORCID: 0000-0002-1264-866X (2019) Molecular characterization and phylogenetic analysis of active y-type high molecular weight glutenin subunit genes at Glu-A1 locus in wheat. Journal of Cereal Science, 86 . pp. 9-14.

Zahedi, A.ORCID: 0000-0002-0165-3797, Greay, T.L., Paparini, A.ORCID: 0000-0002-1105-5184, Linge, K.L., Joll, C.A. and Ryan, U.M.ORCID: 0000-0003-2710-9324 (2019) Identification of eukaryotic microorganisms with 18S rRNA next-generation sequencing in wastewater treatment plants, with a more targeted NGS approach required for Cryptosporidium detection. Water Research, 158 . pp. 301-312.

2018

Cooper, C., Keatley, S., Northover, A., Gofton, A.W., Brigg, F., Lymbery, A.J.ORCID: 0000-0002-0542-3446, Pallant, L., Clode, P.L. and Thompson, R.C.A. (2018) Next generation sequencing reveals widespread trypanosome diversity and polyparasitism in marsupials from Western Australia. International Journal for Parasitology: Parasites and Wildlife, 7 (1). pp. 58-67.

Dastogeer, K.M.G. (2018) Influence of fungal endophytes on plant physiology is more pronounced under stress than well-watered conditions: a meta-analysis. Planta, 248 (6). pp. 1403-1416.

Dastogeer, K.M.G., Li, H., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2018) Differential responses of accessions of native Australian Nicotiana species to water stress. Australian Journal of Botany, 66 (3). pp. 265-277.

Dastogeer, K.M.G., Li, H., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2018) Fungal endophytes and a virus confer drought tolerance to Nicotiana benthamiana plants through modulating osmolytes, antioxidant enzymes and expression of host drought-responsive genes. Environmental and Experimental Botany, 149 . pp. 95-108.

Francki, M.G., Walker, E., Li, D.A., Forrest, K. and Belzile, F. (2018) High-density SNP mapping reveals closely linked QTL for resistance to Stagonospora nodorum blotch (SNB) in flag leaf and glume of hexaploid wheat. Genome, 61 (2). pp. 145-149.

Greay, T.L., Barbosa, A.D.ORCID: 0000-0003-3289-1445, Rees, R.L., Paparini, A.ORCID: 0000-0002-1105-5184, Ryan, U.M.ORCID: 0000-0003-2710-9324, Oskam, C.L. and Irwin, P.J.ORCID: 0000-0002-0006-8262 (2018) An Australian dog diagnosed with an exotic tick-borne infection: Should Australia still be considered free from Hepatozoon canis? International Journal for Parasitology, 48 (11). pp. 805-815.

Hu, X., Peng, Y., Ren, X., Peng, J., Nevo, E., Ma, W.ORCID: 0000-0002-1264-866X and Sun, D. (2018) Allelic variation of low molecular weight glutenin subunits composition and the revealed genetic diversity in durum wheat Triticum turgidum L. ssp. durum. Breeding Science, 68 (5). pp. 524-535.

Iqbal, S. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2018) Developments in diagnostic techniques for cereal pathogens. In: Oliver, R., (ed.) Integrated Disease Management of Wheat and Barley. Burleigh Dodds Science Publishing Limited, Ch 14.

Tran, T.T., Li, H., Nguyen, D.Q., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Sivasithamparam, K. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2018) Monilinia fructicola and Monilinia laxa isolates from stone fruit orchards sprayed with fungicides displayed a broader range of responses to fungicides than those from unsprayed orchards. European Journal of Plant Pathology, 153 (4). pp. 985-999.

Watt, C., Zhou, G., McFawn, L-A, Chalmers, K.J. and Li, C. (2018) Fine mapping of qGL5H, a major grain length locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 132 (4). pp. 883-893.

Xu, Y., Zhang, X-Q, Harasymow, S., Westcott, S., Zhang, W. and Li, C. (2018) Molecular marker-assisted backcrossing breeding: An example to transfer a thermostable β-amylase gene from wild barley. Molecular Breeding, 38 (5).

Yu, Z., Islam, S., She, M., Diepeveen, D.ORCID: 0000-0002-1535-8019, Zhang, Y., Tang, G., Zhang, J.ORCID: 0000-0002-1623-4675, Juhász, A., Yang, R.ORCID: 0000-0003-2563-2015 and Ma, W.ORCID: 0000-0002-1264-866X (2018) Wheat grain protein accumulation and polymerization mechanisms driven by nitrogen fertilization. The Plant Journal, 96 (6). pp. 1160-1177.

Yu, Z., Juhász, A., Islam, S., Diepeveen, D.ORCID: 0000-0002-1535-8019, Zhang, J.ORCID: 0000-0002-1623-4675, Wang, P. and Ma, W.ORCID: 0000-0002-1264-866X (2018) Impact of mid-season sulphur deficiency on wheat nitrogen metabolism and biosynthesis of grain protein. Scientific Reports, 8 . Article number 2499.

Zhang, Y., Cao, X., Juhász, A., Islam, S., Qi, P., She, M., Zhu, Z., Hu, X., Yu, Z., Wylie, S.ORCID: 0000-0002-5639-7460, Dowla, M., Chen, X., Yang, R.ORCID: 0000-0003-2563-2015, Xia, X., Zhang, J.ORCID: 0000-0002-1623-4675, Zhao, Y., Shi, N., Dell, B., He, Z. and Ma, W.ORCID: 0000-0002-1264-866X (2018) Wheat avenin-like protein and its significant Fusarium Head Blight resistant functions. bioRxiv .

Zhang, Y., Hu, X., Islam, S., She, M., Peng, Y., Yu, Z., Wylie, S.ORCID: 0000-0002-5639-7460, Juhász, A., Dowla, M., Yang, R.ORCID: 0000-0003-2563-2015, Zhang, J.ORCID: 0000-0002-1623-4675, Wang, X., Dell, B., Chen, X., Nevo, E., Sun, D. and Ma, W.ORCID: 0000-0002-1264-866X (2018) New insights into the evolution of wheat avenin-like proteins in wild emmer wheat (Triticum dicoccoides). Proceedings of the National Academy of Sciences, 115 (52). pp. 13312-13317.

Zhou, Y., Zhou, G., Broughton, S., Westcott, S., Zhang, X-Q, Xu, Y., Xu, L., Li, C. and Zhang, W. (2018) Towards the identification of a gene for prostrate tillers in barley (Hordeum vulgare L.). PLOS ONE, 13 (2). e0192263.

Zou, M., Zhou, G., Angessa, T.T., Zhang, X-Q and Li, C. (2018) Polymorphism of floral type gene Cly1 and its association with thermal stress in barley. PLoS ONE, 13 (3).

Éva, C., Szőke-Pázsi, K., Makai, S., Gell, G., Fábián, A., Poczkodi, E., Tóth, G., Sági, L., Tamás, L. and Juhász, A. (2018) In vivo DNA affinity purification and histone deacetylase inhibitor treatment proves the role of histone acetylation in the expression regulation of high-molecular-weight glutenin genes. Plant Molecular Biology Reporter, 36 (5-6). pp. 750-763.

2017

Abbasian, M., Eslampanah Seyedi, H.A., Sayed Tabatabaei, B.E., Arab-Bafrani, Z., Mofid, M.R. and Zareie, R. (2017) Recombinant production, purification and characterization of vessel dilator in E. coli. Protein Expression and Purification, 129 . pp. 75-83.

Begum, Farhana (2017) Biology and molecular characterisation of the root lesion nematode, Pratylenchus curvicauda. PhD thesis, Murdoch University.

Dai, F., Wang, X., Zhang, X-Q, Chen, Z., Nevo, E., Jin, G., Wu, D., Li, C. and Zhang, G. (2017) Assembly and analysis of a qingke reference genome demonstrate its close genetic relation to modern cultivated barley. Plant Biotechnology Journal, 16 (3). pp. 760-770.

Dastogeer, K.M.G., Li, H., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Du, X., Ren, Y. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2017) Metabolic responses of endophytic Nicotiana benthamiana plants experiencing water stress. Environmental and Experimental Botany, 143 . pp. 59-71.

Dastogeer, K.M.G., Li, H., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2017) Host specificity of Endophytic Mycobiota of wild Nicotiana plants from arid regions of Northern Australia. Microbial Ecology, 75 (1). pp. 74-87.

Dastogeer, K.M.G. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2017) Plant–Fungi Association: Role of fungal endophytes in improving plant tolerance to water stress. In: Singh, D.P., Singh, H.B. and Prabha, R., (eds.) Plant-Microbe Interactions in Agro-Ecological Perspectives. Springer Nature, Singapore, pp. 143-159.

Dowla, Mirza (2017) Genetic architecture of wheat (Triticum aestivum L.) phenology to maximize yield in water limited environments. PhD thesis, Murdoch University.

Gell, G., Kovács, K., Veres, G., Korponay-Szabó, I.R. and Juhász, A. (2017) Characterization of globulin storage proteins of a low prolamin cereal species in relation to celiac disease. Scientific Reports, 7 .

Iqbal, S. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2017) Nematodes. In: Thomas, B., Murray, B.G. and Murphy, D.J., (eds.) Encyclopedia of Applied Plant Sciences. Elsevier, pp. 113-119.

Koh, S.H., Li, H., Sivasithamparam, K., Admiraal, R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2017) Evolution of a wild-plant tobamovirus passaged through an exotic host: Fixation of mutations and increased replication. Virus Evolution, 3 (1). vex001.

Naz, Fareeha (2017) Improving the effectiveness and delivery of gene silencing triggers to control plant parasitic nematodes. PhD thesis, Murdoch University.

Rahman, Sharmin (2017) Neuronal signalling molecules as targets for green peach aphid (Myzus persicae) control via RNA interference. PhD thesis, Murdoch University.

Voss-Fels, K.P., Qian, L., Parra-Londono, S., Uptmoor, R., Frisch, M., Keeble-Gagnère, G., Appels, R. and Snowdon, R.J. (2017) Linkage drag constrains the roots of modern wheat. Plant, Cell & Environment . Early View.

Wang, R., Yang, F., Zhang, X-Q, Wu, D., Tan, C., Westcott, S., Broughton, S., Li, C., Zhang, W. and Xu, Y. (2017) Characterization of a Thermo-Inducible Chlorophyll-deficient mutant in barley. Frontiers in Plant Science, 8 .

Wylie, S.ORCID: 0000-0002-5639-7460 and Li, H. (2017) A survey of natural distribution of yellow tailflower mild mottle virus in south-western Australia reveals new indigenous and exotic hosts. Australasian Plant Disease Notes, 12 (1).

Wylie, S.J.ORCID: 0000-0002-5639-7460, Adams, M., Chalam, C., Kreuze, J., López-Moya, J.J., Ohshima, K., Praveen, S., Rabenstein, F., Stenger, D., Wang, A. and Murilo Zerbini, F. (2017) Erratum: ICTV Virus taxonomy profile: Potyviridae. Journal of General Virology, 98 (11). p. 2893.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Adams, M., Chalam, C., Kreuze, J., López-Moya, J.J., Ohshima, K., Praveen, S., Rabenstein, F., Stenger, D., Wang, A. and Zerbini, F.M. (2017) ICTV Virus Taxonomy Profile: Potyviridae. Journal of General Virology, 98 (3). pp. 352-354.

Zhou, G., Jian, J., Wang, P., Li, C., Tao, Y., Li, X., Renshaw, D., Clements, J., Sweetingham, M. and Yang, H. (2017) Construction of an ultra-high density consensus genetic map, and enhancement of the physical map from genome sequencing in Lupinus angustifolius. Theoretical and Applied Genetics . In Press.

2016

Ariyarathna, H.A.C.K., Oldach, K.H. and Francki, M.G. (2016) A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na+ concentration in bread wheat. BMC Plant Biology, 16 (1).

Ariyarathna, H.A.K., Francki, M.G. and Belzile, F. (2016) Phylogenetic relationships and protein modelling revealed two distinct subfamilies of group II HKT genes between crop and model grasses. Genome, 59 (7). pp. 509-517.

Aykut Tonk, F., İştipliler, D., Tosun, M., Turanli, F., Ilbi, H., Cakir, M. and Pillen, K. (2016) Genetic mapping and inheritance of Russian wheat aphid resistance gene in accession IG 100695. Plant Breeding, 135 (1). pp. 21-25.

Castagnone-Sereno, P., Fosu-Nyarko, J., Nicol, P., Naz, F., Gill, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2016) Analysis of the transcriptome of the infective stage of the beet cyst nematode, H. schachtii. PloS one, 11 (1). e0147511.

Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2016) Advances in understanding the molecular mechanisms of root lesion nematode host interactions. Annual Review of Phytopathology, 54 (1). pp. 253-278.

Hill, C.B.ORCID: 0000-0002-6754-5553 and Li, C. (2016) Genetic architecture of flowering phenology in cereals and opportunities for crop improvement. Frontiers in Plant Science, 7 . Article 1906.

Iqbal, S., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2016) Genomes of parasitic nematodes (Meloidogyne hapla, Meloidogyne incognita, Ascaris suum and Brugia malayi) have a reduced complement of small RNA interference pathway genes: knockdown can reduce host infectivity of M. incognita. Functional & Integrative Genomics, 16 (4). pp. 441-457.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Iqbal, S. and Fosu-Nyarko, J. (2016) Belowground defence strategies against migratory nematodes. In: Vos, C.M.F. and Kazan, K., (eds.) Belowground Defence Strategies in Plants. Springer International Publishing, pp. 253-278.

Koh, S.H., Ong, J.W.L., Admiraal, R., Sivasithamparam, K., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2016) A novel member of the Tombusviridae from a wild legume, Gompholobium preissii. Archives of Virology, 161 (10). pp. 2893-2898.

Li, H., Zhang, C., Luo, H., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Sivasithamparam, K., Koh, S.H., Ong, J.W.L. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2016) Yellow tailflower mild mottle virus and Pelargonium zonate spot virusco-infect a wild plant of red-striped tailflower in Australia. Plant Pathology, 65 (3). pp. 503-509.

Lv, D-W, Zhen, S., Zhu, G-R, Bian, Y-W, Chen, G-X, Han, C-X, Yu, Z. and Yan, Y-M (2016) High-Throughput sequencing reveals H2O2 stress-associated MicroRNAs and a potential regulatory network in Brachypodium distachyon seedlings. Frontiers in Plant Science, 7 .

Makai, S., Tamás, L. and Juhász, A. (2016) A catalog of regulatory sequences for trait gene for the genome editing of wheat. Frontiers in Plant Science, 7 . Article number 1504.

Natera, S.H.A., Hill, C.B.ORCID: 0000-0002-6754-5553, Rupasinghe, T.W.T. and Roessner, U. (2016) Salt-stress induced alterations in the root lipidome of two barley genotypes with contrasting responses to salinity. Functional Plant Biology, 43 (2). pp. 207-219.

Ong, J.W.L., Li, H., Sivasithamparam, K., Dixon, K.W., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2016) Novel Endorna-like viruses, including three with two open reading frames, challenge the membership criteria and taxonomy of the Endornaviridae. Virology, 499 . pp. 203-211.

Peng, Y., Yu, Z., Islam, S., Zhang, Y., Wang, X., Lei, Z., Yu, K., Sun, D. and Ma, W.ORCID: 0000-0002-1264-866X (2016) Allelic variation of LMW-GS composition in Chinese wheat landraces of the Yangtze-River region detected by MALDI-TOF-MS. Breeding Science, 66 (4). pp. 646-652.

Yang, X-F, Yu, X-Q, Zhou, Z., Ma, W.ORCID: 0000-0002-1264-866X and Tang, G. (2016) A high-efficiency Agrobacterium tumefaciens mediated transformation system using cotyledonary node as explants in soybean (Glycine max L.). Acta Physiologiae Plantarum, 38 (3). Article 60.

Zhang, X., Zhou, G., Shabala, S., Koutoulis, A., Shabala, L., Johnson, P., Li, C. and Zhou, M. (2016) Identification of aerenchyma formation-related QTL in barley that can be effective in breeding for waterlogging tolerance. Theoretical and Applied Genetics, 129 (6). pp. 1167-1177.

2015

Bian, M., Jin, X., Broughton, S., Zhang, X-Q, Zhou, G., Zhou, M., Zhang, G., Sun, D. and Li, C. (2015) A new allele of acid soil tolerance gene from a malting barley variety. BMC Genetics, 16 (1).

Bilgi, V., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2015) Oral delivery of double-stranded RNA and the effects of RNA interference on the green peach aphid, Myzus persicae. Journal of the Royal Society of Western Australia, 98 . pp. 137-138.

Broughton, S., Zhou, G., Teakle, N.L., Matsuda, R., Zhou, M., O’Leary, R.A., Colmer, T.D. and Li, C. (2015) Waterlogging tolerance is associated with root porosity in barley (Hordeum vulgare L.). Molecular Breeding, 35 . Article 27.

Cao, H., Yan, X., Chen, G., Zhou, J., Li, X., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2015) Comparative proteome analysis of A- and B-type starch granule-associated proteins in bread wheat (Triticum aestivum L.) and Aegilops crassa. Journal of Proteomics, 112 . pp. 95-112.

Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2015) Application of biotechnology for nematode control in crop plants. Advances in Botanical Research, 75 . pp. 339-376.

Fosu-Nyarko, J., Tan, J-A.C. H., Gill, R., Agrez, V.G., Rao, U. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2015) De novo analysis of the transcriptome of Pratylenchus zeae to identify transcripts for proteins required for structural integrity, sensation, locomotion and parasitism. Molecular Plant Pathology, 17 (4). pp. 532-552.

Koh, S.H., Li, H., Admiraal, R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2015) Catharanthus mosaic virus: A potyvirus from a gymnosperm, Welwitschia mirabilis. Virus Research, 203 . pp. 41-46.

Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Cai, H., Cakir, M., Cseke, L.J., Cockram, J., de Oliveira, A.C., De Pace, C., Dempewolf, H., Ellison, S., Gepts, P., Greenland, A., Hall, A., Hori, K., Hughes, S., Humphreys, M.W., Iorizzo, M., Ismail, A.M., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortiz, R., Paterson, A.H., Simon, P.W., Tohme, J., Tuberosa, R., Valliyodan, B., Varshney, R.K.ORCID: 0000-0002-4562-9131, Wullschleger, S.D., Yano, M. and Prasad, M. (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science, 6 . Article 563.

Lawrenson, T., Shorinola, O., Stacey, N., Li, C., Østergaard, L., Patron, N., Uauy, C. and Harwood, W. (2015) Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease. Genome Biology, 16 (1).

Li, D.A., Walker, E. and Francki, M.G. (2015) Identification of a member of the catalase multigene family on wheat chromosome 7A associated with flour b* colour and biological significance of allelic variation. Molecular Genetics and Genomics, 290 (6). pp. 2313-2324.

Liang, X., Zhen, S., Han, C., Wang, C., Li, X., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2015) Molecular characterization and marker development for hexaploid wheat-specific HMW glutenin subunit 1By18 gene. Molecular Breeding, 35 (12). Article number: 221.

Ma, W.ORCID: 0000-0002-1264-866X, Liu, X., Wang, S., Xue, H. and Singh, V.P. (2015) Simulating crop evapotranspiration response under different planting scenarios by modified SWAT model in an irrigation district, Northwest China. PloS one, 10 (10). e0139839.

Ma, Y., Shabala, S., Li, C., Liu, C., Zhang, W. and Zhou, M. (2015) Quantitative Trait Loci for salinity tolerance identified under drained and waterlogged conditions and their association with flowering time in barley (Hordeum vulgare. L). PloS one, 10 (8).

Ong, J.W.L., Phillips, R.D., Dixon, K.W., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2015) Characterization of the first two viruses described from wild populations of hammer orchids (Drakaeaspp.) in Australia. Plant Pathology, 65 (1). pp. 163-172.

Samarasekera, N., Fonville, A., Lerpiniere, C., Farrall, A.J., Wardlaw, J.M., White, P.M., Smith, C., Al-Shahi Salman, R., Addison, A., Ahmad, K., Alhadad, S., Andrews, P., Bisset, E., Bodkin, P., Bouhaidar, R., Brennan, P., Campbell, B., Chandran, S., Cook, H., Davenport, R., Dennis, M., Derry, C., Dodds, K., Doubal, F., Duncan, S., Elder, A., Fitzpatrick, M., Foley, P., Fouyas, I., Ghosh, S., Gibson, R., Gordon, C., Grant, R., Hewett, R., Hughes, F., Hughes, M., Hunt, D., Hunter, N., Ironside, J., Liaquat, I., Josephson, C., Kamat, A., Kealley, S., Keir, S., Kerr, G., Kerrigan, S., Keston, P., King, M., Knight, R., Macdonald, E., Mackay, G., Macleod, D., Macleod, M., Maguire, C., Makin, S., Mathews, A., Maxwell, F., McClellan, S., Millar, T., Morris, Z., Morse, T., Mumford, C., Murray, K., Myles, L., Nimmo, G., Ng, Y., Pal, S., Rannikmae, K., Rhodes, J., Ross, J., Russell, T., Sandercock, P., Sellar, R., Shanmuganathan, M., Shekhar, H., Simms, H., Sittampalam, M., Soleiman, H., Spiers, H., Statham, P., Stavrinos, N., Stone, J., Stuart, J., Sudlow, C., Summers, D., Taylor, P., Torgersen, A., van Dijke, M., Walker, R., Weller, B., Whiteley, W., Whittle, I., Will, R., Young, W., Anderson, J., Broadbent, S., Butler, L., Caesar, D., Cantley, P., Carter, J., Clegg, G., Coull, A., Crosswaite, A., Dear, J., Dummer, S., Duncan, F., Elder-Gracie, T., Enright, K., Fitzgerald, T., Fothergill, J., Frier, B., Grant, D., Gray, A., Hart, S., Henderson, R., Jaap, A., Leigh-Smith, S., Jones, M.ORCID: 0000-0001-5002-0227, Masson, M., McCallum, L., McKechnie, M., McKillop, G., Mead, G., Morley, W., Morrow, B., Morrow, F., Murchison, J., Murphy, R., Ng, J., Ogundipe, O., Patel, D., Pollock, A., Reed, M., Roberts, G., Selvarajah, J., Smith, R., Stirling, C., Turner, N., Wilson, M., Yordanov, S., Bell, N., Chambers, S., Dewar, S., Farquhar, D., Harmouche, A., Jacob, A., Jackson, K., Knox, A., McCafferty, J., Moultrie, S., Munang, L., Noble, D., Ramsay, S., Spence, L., Threlfall, B., Williams, A., Wilson, J., Fitzgerald, A., Jamieson, A., Lange, P., McIntosh, A., Morrison, L. and Todd, I. (2015) Influence of intracerebral hemorrhage location on incidence, characteristics, and outcome. Stroke, 46 (2). pp. 361-368.

Saqib, M., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2015) Serendipitous identification of a new Iflavirus-like virus infecting tomato and its subsequent characterization. Plant Pathology, 64 (3). pp. 519-527.

Wang, A., Liu, L., Peng, Y., Islam, S., Applebee, M., Appels, R., Yan, Y. and Ma, W.ORCID: 0000-0002-1264-866X (2015) Identification of Low Molecular Weight Glutenin Alleles by Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry (MALDI-TOF-MS) in Common Wheat (Triticum aestivum L.). PLoS ONE, 10 (9). e0138981.

Wang, J., Yang, J., Zhang, Q., Zhu, J., Jia, Q., Hua, W., Shang, Y., Li, C. and Zhou, M. (2015) Mapping a major QTL for malt extract of barley from a cross between TX9425 × Naso Nijo. Theoretical and Applied Genetics, 128 (5). pp. 943-952.

Wang, K., Ma, J., Islam, S., Yan, Y., Appels, R., Yan, G. and Ma, W.ORCID: 0000-0002-1264-866X (2015) Detection of cysteine residue numbers in wheat gluten proteins by MALDI-TOF. International Journal of Mass Spectrometry, 392 . pp. 91-95.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Zhang, C., Long, V., Roossinck, M.J., Koh, S.H., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Iqbal, S. and Li, H. (2015) Differential responses to virus challenge of laboratory and wild accessions of Australian species of Nicotiana, and comparative analysis of RDR1 gene sequences. PloS one, 10 (3). e0121787.

Yang, G., Peng, Y., Yu, K., Zhang, Y., Islam, S., Sun, D. and Ma, W.ORCID: 0000-0002-1264-866X (2015) Two novel Y-Type high molecular weight glutenin genes in Chinese wheat landraces of the Yangtze-River region. PloS one, 10 (11). e0142348.

Yang, H., Jian, J., Li, X., Renshaw, D., Clements, J., Sweetingham, M.W., Tan, C. and Li, C. (2015) Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius). BMC Genomics, 16 (1).

Yang, H., Li, C., Lam, H-M, Clements, J., Yan, G. and Zhao, S. (2015) Sequencing consolidates molecular markers with plant breeding practice. Theoretical and Applied Genetics, 128 (5). pp. 779-795.

Zhou, G., Zhang, Q., Tan, C., Zhang, X-Q and Li, C. (2015) Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map. BMC Genomics, 16 (1).

Zhou, G., Zhang, Q., Zhang, X-Q, Tan, C. and Li, C. (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PloS one, 10 (7). e0133161.

2014

Ariyarathna, H.A.C.K., Ul-Haq, T., Colmer, T.D. and Francki, M.G. (2014) Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na+ and K+ status. BMC Plant Biology, 14 (1).

Bartlem, D.G., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Hammes, U.Z. (2014) Vascularization and nutrient delivery at root-knot nematode feeding sites in host roots. Journal of Experimental Botany, 65 (7). pp. 1789-1798.

Cakir, M. and McHenry, M.P. (2014) International research collaborations in agriculture. In: Cacioppo, L., (ed.) Environmental and Agricultural Research Summaries. Volume 1. Nova Science Publishers, Hauppauge, New York, USA.

Dai, H., Zhang, X-Q, Harasymow, S., Roumeliotis, S., Broughton, S., Eglinton, J., Wu, F. and Li, C. (2014) MALDI-TOF mass spectrometry provides an efficient approach to monitoring protein modification in the malting process. International Journal of Mass Spectrometry, 371 . pp. 8-16.

Gupta, S.ORCID: 0000-0002-4948-4689 (2014) Barley disease resistance in Western Australia – Issues and solutions. In: 1st International Workshop on Barley Leaf Diseases: Healthy Barley for Healthy Feed and Food for the Future, 3 - 6 June 2014, Hotel Valentini, Salsomaggiore Terme, Italy.

Gupta, S.ORCID: 0000-0002-4948-4689, D’Antuono, M., Bradley, J., Li, C. and Loughman, R. (2014) Identification and expression of adult plant resistance in barley to powdery mildew (Blumeria graminis f. sp. hordei) in Australia. Euphytica, 203 (3). pp. 595-605.

Jones, J.T., Haegeman, A., Danchin, E.G.J., Gaur, H.S., Helder, J., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Kikuchi, T., Manzanilla-Lopez, R., Palomares-Rius, J.E., Wesemael, W.M.L. and Perry, R.N. (2014) Top 10 plant parasitic nematodes in molecular plant pathology in (Abstracts from the 6th International Congress of Nematology, Cape Town, South Africa, 4-9 May 2014). Journal of Nematology, 46 (2). p. 181.

Jones, M.ORCID: 0000-0001-5002-0227 (2014) WA's court verdict on GM crops is a dose of common sense. Australasian Biotechnology, 24 (3). pp. 46-47.

Jones, M.ORCID: 0000-0001-5002-0227 (2014) WA's court verdict on GM crops is a dose of common sense. The Conversation, 29 May 2014 .

Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Fosu-Nyarko, J. (2014) Molecular biology of root lesion nematodes (Pratylenchus spp.) and their interaction with host plants. Annals of Applied Biology, 164 (2). pp. 163-181.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Tan, J.C.H. and Fosu-Nyarko, J. (2014) Candidate secreted proteins and effectors of Pratylenchus SPP (Abstracts from the 6th International Congress of Nematology, Cape Town, South Africa, May, 2014). Journal of Nematology, 46 (2). p. 181.

McHenry, M.P. and Cakir, M. (2014) Private international investment within the sub-Saharan agricultural milieu. In: Cacioppo, L., (ed.) Environmental and Agricultural Research Summaries. Volume 1. Nova Science Publishers, Hauppauge, New York, USA.

Saqib, M., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2014) Serendipitous identification of a new Iflavirus-like virus infecting tomato, and its subsequent characterization. In: 55th Annual Meeting of the Japanese Society of Plant Physiologists (JSPP), 18 - 20 March, Toyama City, Japan.

Wang, Y., Gupta, S.ORCID: 0000-0002-4948-4689, Wallwork, H., Zhang, X-Q, Zhou, G., Broughton, S., Loughman, R., Lance, R., Wu, D., Shu, X. and Li, C. (2014) Combination of seedling and adult plant resistance to leaf scald for stable resistance in barley. Molecular Breeding, 34 (4). pp. 2081-2089.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2014) Yellow tailflower mild mottle virus: A new tobamovirus described from Anthocercis littorea (Solanaceae) in Western Australia. Archives of Virology, 159 (4). pp. 791-795.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H., Liu, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2014) First report of Narcissus mosaic virus from Australia and from Iris. Australasian Plant Disease Notes, 9 . Article number: 134.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H., Saqib, M. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2014) The global trade in fresh produce and the vagility of plant viruses: A case study in garlic. PloS one, 9 (8). e105044.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H., Sivasithamparam, K. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2014) Complete genome analysis of three isolates of narcissus late season yellows virus and two of narcissus yellow stripe virus: Three species or one? Archives of Virology, 159 (6). pp. 1521-1525.

Ye, H., Harasymow, S., Zhang, X-Q, Paynter, B., Wu, D., Jones, M.ORCID: 0000-0001-5002-0227, Shu, X. and Li, C. (2014) Sequence variation and haplotypes of lipoxygenase gene LOX-1 in the Australian barley varieties. BMC Genetics, 15 . Article number: 36.

2013

Amulaka, F.O., Maling’a, J.N., Cakir, M. and Mulwa, R.M.S. (2013) Development and characterization of wheat germplasm with combined resistance to Russian wheat aphid and stem rust (Race “Ug99”) in Kenya. American Journal of Plant Sciences, 4 (4). pp. 767-773.

Amulaka, F.O., Maling’a, J.N., Pathak, R.S., Cakir, M. and Mulwa, R.M.S. (2013) Yield evaluation of a wheat line with combined resistance to russian wheat aphid and stem rust race “Ug99” in Kenya. American Journal of Plant Sciences, 4 (7). pp. 1494-1499.

Bian, M., Waters, I., Broughton, S., Zhang, X-Q, Zhou, M., Lance, R., Sun, D. and Li, C. (2013) Development of gene-specific markers for acid soil/aluminium tolerance in barley (Hordeum vulgare L.). Molecular Breeding, 32 (1). pp. 155-164.

Bilgi, V., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2013) Mechanism and effects of silencing green peach aphid genes via RNA interference. Journal of the Royal Society of Western Australia, 96 . p. 17.

Cakir, M., Vitou, J., Haley, S., Phan, H., Edwards, O., Peairs, F., Turanli, F., Ilker, E., Ilbi, H., Malinga, J., Maria, A., Tolmay, V. and Bausshini, M. (2013) Gene discovery and pre-emptive breeding of Australian wheat (Triticum Aestivum L.) for broad resistance against insects. In: Wheat Breeding Assembly 2013, 17 - 19 July, Brisbane, Australia.

Chen, G.X., Lv, D.W., Li, W.D., Subburaj, S., Yu, Z., Wang, Y.J., Li, X.H., Wang, K., Ye, X.G., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y.M. (2013) The α-gliadin genes from Brachypodium distachyon L. provide evidence for a significant gap in the current genome assembly. Functional & Integrative Genomics, 14 (1). pp. 149-160.

Crawford, A.C. and Francki, M.G. (2013) Chromosomal location of wheat genes of the carotenoid biosynthetic pathway and evidence for a catalase gene on chromosome 7A functionally associated with flour b* colour variation. Molecular Genetics and Genomics, 288 (10). pp. 483-493.

Crawford, A.C. and Francki, M.G. (2013) Lycopene-ε-cyclase (e-LCY3A) is functionally associated with quantitative trait loci for flour b* colour on chromosome 3A in wheat (Triticum aestivum L.). Molecular Breeding, 31 (3). pp. 737-741.

Fox, R., Kelvin, H., Khoo, P., Gupta, S.ORCID: 0000-0002-4948-4689, Vassos, E., Chalmers, K. and Mather, D. (2013) A Next-Generation approach to mapping and marker development applied to adult-plant resistance of barley against powdery mildew. In: 16th Australian Barley Technical Symposium (ABT '13), 8 - 11 September 2013, Melbourne, VIC.

Francki, M.G. (2013) Improving Stagonospora nodorum resistance in wheat: A review. Crop Science, 53 (2). pp. 355-365.

Fukumoto, T., Nakamura, M., Wylie, S.J.ORCID: 0000-0002-5639-7460, Chiaki, Y. and Iwai, H. (2013) Complete nucleotide sequence of a new isolate of passion fruit woodiness virus from Western Australia. Archives of Virology, 158 (8). pp. 1821-1824.

Ge, P., Hao, P., Cao, M., Guo, G., Lv, D., Subburaj, S., Li, X., Yan, X., Xiao, J., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2013) iTRAQ-based quantitative proteomic analysis reveals new metabolic pathways of wheat seedling growth under hydrogen peroxide stress. Proteomics, 13 (20). pp. 3046-3058.

Gong, X., Westcott, S., Zhang, X-Q, Yan, G., Lance, R., Zhang, G., Sun, D. and Li, C. (2013) Discovery of novel Bmy1 alleles increasing β-amylase activity in Chinese landraces and Tibetan wild barley for improvement of malting quality via MAS. PLoS ONE, 8 (9). e72875.

Han, C, Yu, Z., Feng, S., Lv, D., Yan, X., Chen, G., Li, X., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2013) Applications of capillary electrophoresis for rapidly separating and characterizing water-soluble proteins of wheat grains. Cereal Research Communications, 41 (4). pp. 601-612.

Jones, J.T., Haegeman, A., Danchin, E.G.J., Gaur, H.S., Helder, J., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J.E., Wesemael, W.M.L. and Perry, R.N. (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Molecular Plant Pathology, 14 (9). pp. 946-961.

Kovács, A., Rakszegi, M., Láng, L., Ma, W.ORCID: 0000-0002-1264-866X, Békés, F. and Bedő, Z. (2013) Application of a rapid electrophoresis technique analysing the glutenin subunit composition of wheat genotypes. Cereal Research Communications, 41 (3). pp. 468-481.

Li, X., Islam, S., Yang, H., Ma, W.ORCID: 0000-0002-1264-866X and Yan, G. (2013) Identification of chromosome regions controlling seed storage proteins of narrow-leafed lupin (Lupinus angustifolius). Journal of Plant Research, 126 (3). pp. 395-401.

LÜ, R-H, Xu, Y., Boyd, R., Zhang, X-Q, Broughton, S., Jones, M.ORCID: 0000-0001-5002-0227, Li, C. and Chen, Y-F (2013) Barley and wheat share the same gene controlling the short basic vegetative period. Journal of Integrative Agriculture, 12 (10). pp. 1703-1711.

Senturk Akfirat, F., Ertugrul, F., Hasancebi, S., Aydin, Y., Akan, K., Mert, Z., Cakir, M. and Altinkut Uncuoglu, A. (2013) Chromosomal location of genomic SSR markers associated with yellow rust resistance in Turkish bread wheat (Triticum aestivum L.). Journal of Genetics, 92 (2). pp. 233-240.

Tan, J.C.H., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Fosu-Nyarko, J. (2013) Gene silencing in root lesion nematodes (Pratylenchus spp.) significantly reduces reproduction in a plant host. Experimental Parasitology, 133 (2). pp. 166-178.

Wang, S., Yu, Z., Cao, M., Shen, X., Li, N., Li, X., Ma, W.ORCID: 0000-0002-1264-866X, Weißgerber, H., Zeller, F., Hsam, S. and Yan, Y. (2013) Molecular mechanisms of HMW glutenin subunits from 1Sl genome of Aegilops longissima positively affecting wheat breadmaking quality. PLoS ONE, 8 (4). e58947.

Webster, H., Tibbits, J., Hayden, M., Dell, B., Fosu-Nyarko, J., Keeble, G., Bellgard, M., I.W.G.S.C., and Appels, R. (2013) Utilization of the IWGSC wheat survey sequence for RNASEQ analysis of water stress effects in developing wheat heads. In: ComBio 2013, 29 September - 3 October, Perth, Western Australia.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H., Dixon, K.W., Richards, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2013) Exotic and indigenous viruses infect wild populations and captive collections of temperate terrestrial orchids (Diuris species) in Australia. Virus Research, 171 (1). pp. 22-32.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2013) Donkey orchid symptomless virus: A viral 'Platypus' from Australian terrestrial orchids. PloS one, 8 (11). e79587.

2012

Balázs, G., Tömösközi, S., Harasztos, A., Németh, A., Tamás, V., Morgounov, Á., Belan, I., Ma, W.ORCID: 0000-0002-1264-866X and Békés, F. (2012) Advantages and limitation of lab-on-a-chip technique in the analysis of wheat proteins. Cereal Research Communications, 40 (4). pp. 562-572.

Cakir, M. (2012) Genetic mapping of Russian wheat aphid genes in barley. In: 11th International Barley Genetics Symposium (IBGS), 15 - 20 April 2012, Hangzhou, China.

Cakir, M., Phan, H., Vitou, J., Haley, S., Malinga, J., Peairs, F., Ilbi, H., Mornhinweg, D., Castro, A.M., Dahleen, L., Bouhssini, M., Tolmay, V., Ogbonnaya, F., Edwards, Q. and Lawson, W. (2012) Gene discovery and Pre-breeding in cereals for broad resistance against insects adaptable to variable environments. In: Plant & Animal Genome XX, 14 - 18 January 2012, San Diego, CA

Dong, K., Ge, P., Ma, C., Wang, K., Yan, X., Gao, L., Li, X., Liu, J., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2012) Albumin and globulin dynamics during grain development of elite Chinese wheat cultivar Xiaoyan 6. Journal of Cereal Science, 56 (3). pp. 615-622.

Frick, A., Berryman, D. and Lewis, S.W. (2012) Mass spectrometry imaging: A powerful new tool for the study of latent fingermark chemistry. In: 21st International Symposium on the Forensic Sciences (2012), 23 - 27 September 2012, Hotel Grand Chancellor, Hobart, Tasmania.

Gong, X., Li, C., Zhang, G., Yan, G., Lance, R. and Sun, D. (2012) Novel genes from wild barley hordeum spontaneum for barley improvement. In: Zhang, G., Li, C. and Lui, X., (eds.) Advance in Barley Sciences: Proceedings of 11th International Barley Genetics Symposium. Springer Netherlands, pp. 69-86.

Guo, G., Ge, P., Ma, C., Li, X., Lv, D., Wang, S., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2012) Comparative proteomic analysis of salt response proteins in seedling roots of two wheat varieties. Journal of Proteomics, 75 (6). pp. 1867-1885.

Gupta, D., Taylor, P.W.J., Inder, P., Phan, H.T.T., Ellwood, S.R., Mathur, P.N., Sarker, A. and Ford, R. (2012) Integration of EST-SSR markers of Medicago truncatula into intraspecific linkage map of lentil and identification of QTL conferring resistance to ascochyta blight at seedling and pod stages. Molecular Breeding, 30 (1). pp. 429-439.

Gupta, S.ORCID: 0000-0002-4948-4689 (2012) Identifying barley genetic stock conferring adult plant resistance to powdery mildew in Western Australia. In: 11th International Barley Genetics Symposium (IBGS), 15 - 20 April 2012, Hangzhou, China.

Hailstones, D., Luck, J., Rochford, S., Berryman, D., Chapman, T., Smuts, C., Berg, M., Englezou, A., Ezernieks, V., Kositcharoenkul, N., Jones, M.ORCID: 0000-0001-5002-0227 and Cakir, M. (2012) Platforms to differentiate exotic pathovars of plant bacteria. Cooperative Research Centre for National Plant Biosecurity, Bruce, ACT.

Islam, S., Yan, G., Appels, R. and Ma, W.ORCID: 0000-0002-1264-866X (2012) Comparative proteome analysis of seed storage and allergenic proteins among four narrow-leafed lupin cultivar. Food Chemistry, 135 (3). pp. 1230-1238.

Islam, S., Yan, G., Appels, R. and Ma, W.ORCID: 0000-0002-1264-866X (2012) Wheat and lupin protein interaction at baking: Modifying extractability from lupin-wheat bread. In: 11th International Gluten Workshop, 12 - 16 August 2012, Fragrant Hill Empark Hotel, Beijing, China.

Jiang, S-S, Liang, X-N, Li, X., Wang, S-L, Lv, D-W, Ma, C-Y, Li, X-H, Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y-M (2012) Wheat drought-responsive grain proteome analysis by linear and nonlinear 2-DE and MALDI-TOF mass spectrometry. International Journal of Molecular Sciences, 13 (12). pp. 16065-16083.

Li, C., Gupta, S.ORCID: 0000-0002-4948-4689, Zhang, X-Q, Westcott, S., Yang, J., Park, R., Platz, G., Loughman, R. and Lance, R. (2012) A major QTL controlling adult plant resistance for barley leaf rust. In: Zhang, G., Li, C. and Liu, X., (eds.) Advance in Barley Sciences. Proceedings of 11th International Barley Genetics Symposium. Springer, pp. 285-300.

Li, J., Wang, S., Yu, Z., Li, X., Guo, G., Feng, S., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2012) Optimization and development of capillary electrophoresis for separating and identifying wheat low molecular weight glutenin subunits. Journal of Cereal Science, 55 (2). pp. 254-256.

Ma, C-Y, Gao, L-Y, Li, N., Li, X-H, Ma, W.ORCID: 0000-0002-1264-866X, Appels, R. and Yan, Y-M (2012) Proteomic analysis of albumins and globulins from wheat variety Chinese Spring and its fine deletion line 3BS-8. International Journal of Molecular Sciences, 13 (10). pp. 13398-13413.

Ma, W.ORCID: 0000-0002-1264-866X, Wang, K., Ma, J., Islam, S., Appels, R., Bekes, F. and Yan, Y. (2012) MALDI-TOF approach to measure cysteine number of wheat glutenin subunits. In: 11th International Gluten Workshop, 12 - 16 August 2012, Fragrant Hill Empark Hotel, Beijing, China.

Nicol, P., Gill, R., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) De novo analysis and functional classification of the transcriptome of the root lesion nematode, Pratylenchus thornei, after 454 GS FLX sequencing. International Journal for Parasitology, 42 (3). pp. 225-237.

Punchana, S., Cakir, M., Rerkasem, B. and Jamjod, S. (2012) Mapping the Bod2 gene associated with boron efficiency in wheat. ScienceAsia, 38 (3). pp. 235-243.

Ren, X., Li, C., Cakir, M., Zhang, W., Grime, C., Zhang, X-Q, Broughton, S, Sun, D. and Lance, R. (2012) A quantitative trait locus for long photoperiod response mapped on chromosome 4H in barley. Molecular Breeding, 30 (2). pp. 1121-1130.

Tan, K.C., Ferguson-Hunt, M., Rybak, K., Waters, O.D.C., Stanley, W.A., Bond, C.S., Stukenbrock, E.H., Friesen, T.L., Faris, J.D., McDonald, B.A. and Oliver, R.P. (2012) Quantitative Variation in Effector Activity of ToxA Isoforms fromStagonospora nodorumandPyrenophora tritici-repentis. Molecular Plant-Microbe Interactions, 25 (4). pp. 515-522.

Tan, Matthew (2012) Molecular approaches to diagnostics for plant parasitic nematodes of biosecurity concern. PhD thesis, Murdoch University.

Tarr, A., Diepeveen, D.ORCID: 0000-0002-1535-8019 and Appels, R. (2012) Spectroscopic and chemical fingerprints in malted barley. Journal of Cereal Science, 56 (2). pp. 268-275.

Turanli, F., Jankielsohn, A., Morgounov, Á. and Cakir, M. (2012) The distribution of Russian Wheat Aphid, Diuraphis noxia (Kurdjumov) (Hemiptera: Aphididae) in Turkey. African Journal of Agricultural Research, 7 (39). pp. 5396-5404.

Wang, K., An, X.L., Pan, L.P., Dong, K., Gao, L.Y., Wang, S.L., Xie, Z.Z., Zhang, Z., Appels, R., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y.M. (2012) Molecular characterization of HMW-GS 1Dx3t and 1Dx4t genes from Aegilops tauschii and their potential value for wheat quality improvement. Hereditas, 149 (1). pp. 41-49.

Wang, S., Wang, K., Chen, G., Lv, D., Han, X., Yu, Z., Li, X., Ye, X., Hsam, S.L.K., Ma, W.ORCID: 0000-0002-1264-866X, Appels, R. and Yan, Y. (2012) Molecular characterization of LMW-GS genes in Brachypodium distachyon L. reveals highly conserved Glu-3 loci in Triticum and related species. BMC Plant Biology, 12 . Article number: 221.

Webster, H., Keeble-Gagnère, G., Dell, B., Fosu-Nyarko, J., Mukai, Y., Moolhuijzen, P., Bellgard, M., Jia, J., Kong, X., Feuillet, C., Choulet, F., International Wheat Genome Sequencing Consortium, and Appels, R. (2012) Genome-level identification of cell wall invertase genes in wheat for the study of drought tolerance. Functional Plant Biology, 39 (7). pp. 569-579.

Wright, D. G., Khangura, R., Loughman, R., Bentley, A. and Fosu-Nyarko, J. (2012) First record of Gibberella zeae and Gibberella coronicola on millet in Western Australia. Australasian Plant Disease Notes, 7 (1). pp. 19-21.

Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) Are viruses always villains? The roles plant viruses may play in improving plant responses to stress. In: Tuteja, N., Gill, S.S. and Tuteja, R., (eds.) Improving Crop Productivity in Sustainable Agriculture. Wiley-VCH, pp. 155-162.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) First report of an isolate of Japanese iris necrotic ring virus from Australia. Australasian Plant Disease Notes, 7 (1). pp. 107-110.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Li, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) Phylogenetic analysis of allexiviruses identified on garlic from Australia. Australasian Plant Disease Notes, 7 (1). pp. 23-27.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Luo, H., Li, H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Archives of Virology, 157 (2). pp. 271-284.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Tan, A.J.Y., Li, H., Dixon, K.W. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2012) Caladenia virus A, an unusual new member of the family Potyviridae from terrestrial orchids in Western Australia. Archives of Virology, 157 (12). pp. 2447-2452.

Yang, J., Li, C., Gong, X., Gupta, S.ORCID: 0000-0002-4948-4689, Lance, R., Zhang, G., Loughman, R. and Zhu, J. (2012) Large population with low marker density verse small population with high marker density for QTL mapping: A case study for mapping QTL controlling barley net blotch resistance. In: Zhang, G., Li, C. and Xu, L., (eds.) Advance in Barley Sciences. Proceedings of 11th International Barley Genetics Symposium. Springer, pp. 301-315.

Ye, H., Li, C., Bellgard, M., Lance, R. and Wu, D. (2012) Genes controlling low phytic acid in plants: Identifying targets for barley breeding. In: Zhang, G., Li, C. and Lui, X., (eds.) Advance in Barley Sciences: Proceedings of 11th International Barley Genetics Symposium. Springer Netherlands, pp. 185-198.

Zhang, S., Feng, L., Jiang, H., Ma, W.ORCID: 0000-0002-1264-866X, Korpelainen, H. and Li, C. (2012) Biochemical and proteomic analyses reveal that populus cathayana males and females have different metabolic activities under chilling stress. Journal of Proteome Research, 11 (12). pp. 158150530005-5826.

Zhang, X-Q, Westcott, S., Panozzo, J., Cakir, M., Harasymow, S., Tarr, A., Broughton, S., Lance, R. and Li, C. (2012) Comparative analysis of Australian and Canadian barleys for seed dormancy and malting quality. Euphytica, 188 (1). pp. 103-111.

2011

Baracskai, I., Balázs, G., Liu, L., Ma, W.ORCID: 0000-0002-1264-866X, Oszvald, M., Newberry, M., Tömösközi, S., Láng, L., Bedő, Z. and Békés, F. (2011) A retrospective analysis of HMW and LMW glutenin alleles of cultivars bred in Martonvásár, Hungary. Cereal Research Communications, 39 (2). pp. 225-236.

Cakir, M., Gupta, S.ORCID: 0000-0002-4948-4689, Li, C., Hayden, M., Mather, D.E., Ablett, G.A., Platz, G.J., Broughton, S., Chalmers, K.J., Loughman, R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Lance, R.C.M. (2011) Genetic mapping and QTL analysis of disease resistance traits in the barley population Baudin x AC Metcalfe. Crop & Pasture Science, 62 (2). pp. 152-161.

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Vicky, T., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Kuchel, H., Jacobs, B., Ogbonnaya, F., Barclay, I. and Sheppard, J. (2011) Gene discovery and molecular Pre-breeding for insect resistance in wheat and barley. In: XIX International Plant & Animal Genome Conference, 15 - 19 January 2011, Town & Country Convention Center, San Diego, CA.

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Vicky, T., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Ogbonnaya, F. and Sheppard, J. (2011) Gene discovery and molecular Pre-breeding for insect resistance in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Cakir, M., Rebetzke, G., Conocono, E., Drake-Brockman, F., Waters, I., Stefanova, K., Wilson, R., Barclay, I., McLean, R. and Setter, T. (2011) Physiologic and genetic analysis Of terminal drought tolerance in wheat. In: XIX International Plant & Animal Genome Conference, 15 - 19 January 2011, Town & Country Convention Center, San Diego, CA.

Cakir, M., Waters, I., McDonald, G., Drake-Brockman, F., Stefenova, K., Verbyla, A. and Setter, T. (2011) Mapping QTLs for waterlogging tolerance in wheat(Triticum aestivum L.). In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Cakir, M., Waters, I., Rebetzke, G., Conocono, E., Drake-Brockman, F., Stefanova, K., Wilson, R., Barclay, I., McLean, R. and Setter, T. (2011) Genetic mapping and QTL analysis for terminal drought tolerance in Wheat(Triticum aestivum L.). In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Coutts, B.A., Kehoe, M.A., Webster, C.G., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, R.A.C. (2011) Indigenous and introduced potyviruses of legumes and Passiflora spp. from Australia: biological properties and comparison of coat protein nucleotide sequences. Archives of Virology, 156 (10). pp. 1757-1774.

Coutts, B.A., Kehoe, M.A., Webster, C.G., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, R.A.C. (2011) Zucchini yellow mosaic virus: biological properties, detection procedures and comparison of coat protein gene sequences. Archives of Virology, 156 (12). pp. 2119-2131.

Crawford, A.C., Stefanova, K., Lambe, W., McLean, R., Wilson, R., Barclay, I. and Francki, M.G. (2011) Functional relationships of phytoene synthase 1 alleles on chromosome 7A controlling flour colour variation in selected Australian wheat genotypes. Theoretical and Applied Genetics, 123 (1). pp. 95-108.

Domingos, S.S., Dallas, S.ORCID: 0000-0003-4379-1482, Skillman, L., Felstead, S. and Ho, G.ORCID: 0000-0001-9190-8812 (2011) Nitrogen removal and ammonia-oxidising bacteria in a vertical flow constructed wetland treating inorganic wastewater. Water Science & Technology, 64 (3). pp. 587-594.

Florides, C., Berryman, D. and Jones, M.ORCID: 0000-0001-5002-0227 (2011) Proteome analysis and MALDI-TOF MS, a most efficient tool in Agricultural Diagnostics. In: 3rd International Symposium on Frontiers in Agriculture Proteome Research, 8 - 10 November 2011, Tsukuba International Congress Center, Japan.

Francki, M.G., Crawford, A.C. and Oldach, K. (2011) Transriptomics, metabolomics and proteomics: Integration of latest technologies for improving future wheat productivity. In: Benkeblia, N., (ed.) Sustainable Agriculture and New Biotechnologies. CRC Press, Boca Raton, FL, pp. 425-452.

Gupta, S.ORCID: 0000-0002-4948-4689 and Jayasena, K.W. (2011) Current and future trends of barley pathology in Western Australia. In: 15th Australian Barley Technical Symposium, 18 - 21 September, Adelaide, Australia.

Gupta, S.ORCID: 0000-0002-4948-4689, Li, C., Loughman, R., Cakir, M., Westcott, S. and Lance, R. (2011) Identifying genetic complexity of 6H locus in barley conferring resistance to Pyrenophora teres f. teres. Plant Breeding, 130 (4). pp. 423-429.

Gupta, S.ORCID: 0000-0002-4948-4689, Li, C.D., Cakir, M. and Loughman, R. (2011) Mapping and allelic tests depicting recombinants on 6H locus conferring resistance to Pyrenophora teres f. teres isolates from Australia. In: 4th International Workshop on Barley Leaf Blights, 27 - 29 June 2011, Dundee, Scotland

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., D'Antuono, M. and Bradley, J. (2011) Characterisation and diversity of Pyrenophora teres f. maculata isolates in Western Australia. Australasian Plant Pathology, 41 . pp. 31-40.

Hailstones, D.L., Lock, J.E., Berryman, D., Rochfort, S.J., Flack, M.L., Englezou, A., Jones, M.ORCID: 0000-0001-5002-0227, Cakir, M., Smuts, C. and Chapman, T.A. (2011) Evaluation of novel platforms to differentiate pathovars of plant pathogenic bacteria. In: Inaugural joint 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (2011), 26 - 29 April 2011, Darwin Convention Centre, Darwin, NT.

Islam, S., Ma, W.ORCID: 0000-0002-1264-866X, Yan, G., Gao, L. and Appels, R. (2011) Differential recovery of lupin proteins from the gluten matrix in lupin–wheat bread as revealed by mass spectrometry and two-dimensional electrophoresis. Journal of Agricultural and Food Chemistry, 59 (12). pp. 6696-6704.

Jia, Q., Zhang, X-Q, Westcott, S., Broughton, S., Cakir, M., Yang, J., Lance, R. and Li, C. (2011) Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley. Theoretical and Applied Genetics, 122 (8). pp. 1451-1460.

Jin, X., Harasymow, S., Bonnardeaux, Y., Tarr, A., Appels, R., Lance, R., Zhang, G. and Li, C. (2011) QTLs for malting flavour component associated with pre-harvest sprouting susceptibility in barley (Hordeum vulgare L.). Journal of Cereal Science, 53 (2). pp. 149-153.

Jones, M.ORCID: 0000-0001-5002-0227 (2011) Application of gene silencing for control of plant parasitic nematodes. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Fosu-Nyarko, J., Agrez, V., Hird, S., Gill, R., Saqib, M. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2011) Synthetic host resistance to plant parasitic nematodes, and new plant virus encounters between endemic and crop plants. In: Japan-Australia Symposium on Plant Sciences for Agriculture IV, 11 - 12 December, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Gill, R., Nicol, P. and Fosu-Nyarko, J. (2011) De novo analysis of 454 GSFlx transcriptome of Pratylenchus thornei. In: Proceedings of the 63rd International Symposium on Crop Protection, 24 May, Ghent, Belgium.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Goto, D.B. (2011) Root-knot nematodes and giant cells. In: Jones, J., Gheysen, G. and Fenoll, C., (eds.) Genomics and Molecular Genetics of Plant-Nematode Interactions. Springer Netherlands, pp. 83-100.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Wylie, S.J.ORCID: 0000-0002-5639-7460, Saqib, M., Gill, R., Cakir, M., Luo, H., Zhang, J.ORCID: 0000-0002-1623-4675, Nicol, J., Iqbal, S., Tan, J., Tan, Matthew, Herath, M., Chamberlain, D., Quader, M., Francisco, P., Ong, J., Agrez, V. and Fosu-Nyarko, J. (2011) Applications of 'next generation' sequencing in plant pathology. In: 21st Annual Combined Biological Sciences Meeting, 26 August 2011, Perth, Western Australia.

Kaur, S., Francki, M.G. and Forster, J.W. (2011) Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species. Plant Biotechnology Journal, 10 (2). pp. 125-138.

Limadinata, V., Liu, F., Gupta, S.ORCID: 0000-0002-4948-4689, Park, R., Platz, G., Zhang, X-Q, Westcott, S., Loughman, R., Lance, R. and Li, C. (2011) A gene or gene cluster controlling adult plant resistance to leaf rust on chromosome 5HS. In: 15th Australian Barley Technical Symposium, 18 - 21 September, Adelaide, Australia.

Liu, F., Gupta, S.ORCID: 0000-0002-4948-4689, Zhang, X-Q, Jones, M.ORCID: 0000-0001-5002-0227, Loughman, R., Lance, R. and Li, C. (2011) PCR markers for selection of adult plant leaf rust resistance in barley (Hordeum vulgare L.). Molecular Breeding, 28 (4). pp. 657-666.

Liu, W., Zhang, Y., Gao, X., Wang, K., Wang, S., Zhang, Y., He, Z., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2011) Comparative proteome analysis of glutenin synthesis and accumulation in developing grains between superior and poor quality bread wheat cultivars. Journal of the Science of Food and Agriculture, 92 (1). pp. 106-115.

Luo, H., Wylie, S.J.ORCID: 0000-0002-5639-7460, Coutts, B., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2011) A virus of an isolated indigenous flora spreads naturally to an introduced crop species. Annals of Applied Biology, 159 (3). pp. 339-347.

Ma, W.ORCID: 0000-0002-1264-866X, Song, C., Zeng, F., Feibo, W. and Zhang, G. (2011) Proteomic analysis of nitrogen stress-responsive proteins in two rice cultivars differing in N utilization efficiency. Journal of Integrated OMICS, 1 (1). pp. 78-87.

Muehlbauer, G., Close, T., Graner, A., Langridge, P., Li, C., Matsumoto, T., Sato, K., Schulman, A., Waugh, R., Wise, R., Zhang, G. and Stein, N. (2011) A sequence of the barley genome in 2011. In: Plant & Animal Genomes X1X Conference, 15 - 19 January 2011, San Diego, CA.

Nicol, P., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Gill, R. and Fosu-Nyarko, J. (2011) Analysis of transcriptome data from plant parasitic nematodes. In: 21st Annual Combined Biological Sciences Meeting, 26 August, Perth, Western Australia.

Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Tolmay, V., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Ogbonnaya, F., Christopher, M., Sheppard, J. and Cakir, M. (2011) Gene discovery and pre-breeding for Russian wheat aphid resistance in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Saqib, M., Gadja, B.E., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (2011) Virus symptomatology in accessions of the Medicago truncatula core collection and identification of virus resistance phenotypes. Crop and Pasture Science, 62 (8). pp. 686-700.

Wang, K., Gao, L., Wang, S., Zhang, Y., Li, X., Zhang, M., Xie, Z., Yan, Y., Bellgard, M. and Ma, W.ORCID: 0000-0002-1264-866X (2011) Phylogenetic relationship of a new class of LMW-GS genes in the M genome of Aegilops comosa. Theoretical and Applied Genetics, 122 (7). pp. 1411-1425.

Wylie, S.ORCID: 0000-0002-5639-7460 and Jones, M.ORCID: 0000-0001-5002-0227 (2011) Hardenbergia virus A, a novel member of the family Betaflexiviridae from a wild legume in Southwest Australia. Archives of Virology, 156 (7). pp. 1245-1250.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Coutts, B.A. and Jones, R.A.C. (2011) Genetic variability of the coat protein sequence of pea seed-borne mosaic virus isolates and the current relationship between phylogenetic placement and resistance groups. Archives of Virology, 156 (7). pp. 1287-1290.

Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2011) Characterisation and quantitation of mutant and wild-type genomes of Hardenbergia mosaic virus isolates co-infecting a wild plant of Hardenbergia comptoniana. Archives of Virology, 156 (7). pp. 1251-1255.

Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2011) The complete genome sequence of a Passion fruit woodiness virus isolate from Australia determined using deep sequencing, and its relationship to other potyviruses. Archives of Virology, 156 (3). pp. 479-482.

Ye, H., Zhang, X-Q, Broughton, S., Westcott, S., Wu, D., Lance, R. and Li, C. (2011) A nonsense mutation in a putative sulphate transporter gene results in low phytic acid in barley. Functional & Integrative Genomics, 11 (1). pp. 103-110.

Zhang, X-Q, Li, C., Panozzo, J., Westcott, S., Zhang, G., Tay, A., Appels, R., Jones, M.ORCID: 0000-0001-5002-0227 and Lance, R. (2011) Dissecting the telomere region of barley chromosome 5HL using rice genomic sequences as references: new markers for tracking a complex region in breeding. Molecular Breeding, 27 . pp. 1-9.

Zheng, W., Peng, Y., Ma, J., Appels, R., Sun, D. and Ma, W.ORCID: 0000-0002-1264-866X (2011) High frequency of abnormal high molecular weight glutenin alleles in Chinese wheat landraces of the Yangtze-River region. Journal of Cereal Science, 54 (3). pp. 401-408.

2010

Bohssini, M., Grando, S., Ceccarelli, S., Street, K., Ogbonnaya, F., Amri, A., Ketata, H., Mosaad, M.M., Lhaloui, C.S., Mulatu, B., Bouhachem, S.D., Mornhinweg, D., Porter, D.R., Smith, M. and Cakir, M. (2010) Progress in host plant resistance to Russian wheat aphid in North Africa and West Asia. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Breen, J., Li, D., Dunn, D.S., Bekes, F., Kong, X., Zhang, J., Jia, J., Wicker, T., Mago, R., Ma, W.ORCID: 0000-0002-1264-866X, Bellgard, M. and Appels, R. (2010) Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain. BMC Plant Biology, 10 . Article number: 99.

Cakir, M., Phan, H., Edwards, O. and Lovett, J. (2010) Overview of an international Russian wheat aphid workshop towards safeguarding Australia's wheat and barley crops. In: The Australian Entomological Society's 41st AGM & Scientific Conference, 26 - 30 September 2010, Perth, Western Australia.

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Castro, A.M., Lindeque, R., Bohssini, M., Lage, J., Malinga, J., Tolmay, V., Ogbonnaya, F., Edwards, O. and Sheppard, J. (2010) Genotypic and phenotypic diversity analysis of a set of international wheat germplasm against Russian wheat aphid. In: 3rd International Conference of Plant Molecular Breeding, 5 - 9 September 2010, Beijing, China

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Malinga, J. and Edwards, O. (2010) Molecular genetic dissection of Russian wheat aphid and Ug99 stem rust resistance genes in wheat. In: 20th Combined Biological Sciences Meeting, 27 August 2010, Perth, Western Australia

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Kuchel, H., Jacobs, B., Barclay, I., Gelalcha, S. and Sheppard, J. (2010) Safeguarding world wheat and barley production against Russian wheat aphid: An international germplasm evaluation and pre-breeding initiative. In: The Australian Entomological Society's 41st AGM & Scientific Conference, 26 - 30 September 2010, Perth, Western Australia

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2010) Gene discovery and pre-breeding for Russian wheat aphid and Ug99 resistance in wheat. In: 3rd International Conference of Plant Molecular Breeding, 5 - 9 September 2010, Beijing, China

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Mornhinweg, D., Malinga, J., Simkova, H. and Edwards, O. (2010) Molecular pre-breeding for Russian wheat aphid and Ug99 resistance in wheat and barley. In: 20th International Triticeae Mapping Initiative (ITMI) Workshop, 1 - 5 September 2010, Beijing, China

Cakir, M., Vitou, J., Lawson, W., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, L., Gelalcha, S. and Sheppard, J. (2010) Safeguarding world wheat and barley production against Russian wheat aphid: An international pre-breeding initiative. In: XVIII Annual International Plant & Animal Genome Conference, 26 - 29 September 2010, Perth, Western Australia.

Cakir, M., Vitou, J., Phan, H., Ilbi, H., Haley, S., Lawson, W., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Castro, A.M., Gelacha, S., Edwards, O., Christopher, M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2010) Pre-emptive breeding and molecular marker development for resistance to russian wheat aphid in wheat and barley. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Cubizolles, N., Laugier, C., Mastrangelo, A.M., Faure, S., Choulet, F., Roger, D., Gauthier, V., Martinant, J-P, Sourdille, P., Balfourier, F., Le Paslier, M-C, Chauveau, A., Cakir, M., Gandon, B., Guerreiro, L., Gielen, J., Jaubertie, J.P., Jack, P., Robert, O., Korzun, V., Feuillet, C. and Paux, E. (2010) Insertion Site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. In: 3rd International Conference of Plant Molecular Breeding, 5 - 9 September 2010, Beijing, China

Gao, L., Ma, W.ORCID: 0000-0002-1264-866X, Chen, J., Wang, K., Li, J., Wang, S., Bekes, F., Appels, R. and Yan, Y. (2010) Characterization and Comparative Analysis of Wheat High Molecular Weight Glutenin Subunits by SDS-PAGE, RP-HPLC, HPCE, and MALDI-TOF-MS. Journal of Agricultural and Food Chemistry, 58 (5). pp. 2777-2786.

Goto, D.B., Fosu-Nyarko, J., Sakuma, F., Sadler, J., Flottman-Reid, M., Uehara, T., Kondo, N., Yamaguchi, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) In planta observation of live fluorescent plant endoparasitic nematodes during early stages of infection. Nematological Research, 40 (1). pp. 15-19.

Gupta, S.ORCID: 0000-0002-4948-4689, Li, C., Loughman, R., Cakir, M., Platz, G., Westcott, S., Bradley, J., Broughton, S. and Lance, R. (2010) Quantitative trait loci and epistatic interactions in barley conferring resistance to net type net blotch (Pyrenophora teres f. teres) isolates. Plant Breeding, 129 (4). pp. 362-268.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Agribiotechnology for the ASIA pacific region. Asia Pacific Journal of Molecular Biology and Biotechnology, 18 (1). pp. 7-14.

Lan, P., Li, W.F., Wang, H.Z. and Ma, W.ORCID: 0000-0002-1264-866X (2010) Characterization, sub-cellular localization and expression profiling of the isoprenylcysteine methylesterase gene family in Arabidopsis thaliana. BMC Plant Biology, 10 . Article number: 212.

Lee, E., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) First report of 'Candidatus Phytoplasma aurantifolia' associated with severe stunting and necrosis on the invasive weed Pelargonium capitatum in Western Australia. Plant Disease, 94 (10). p. 1264.

Liu, L., Ikeda, T.M., Branlard, G., Peña, R.J., Rogers, W.J., Lerner, S.E., Kolman, M.A., Xia, X., Wang, L., Ma, W.ORCID: 0000-0002-1264-866X, Appels, R., Yoshida, H., Wang, A., Yan, Y. and He, Z. (2010) Comparison of low molecular weight glutenin subunits identified by SDS-PAGE, 2-DE, MALDI-TOF-MS and PCR in common wheat. BMC Plant Biology, 10 . Article number: 124.

Luo, H., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Identification of plant viruses using one-dimensional gel electrophoresis and peptide mass fingerprints. Journal of Virological Methods, 165 (2). pp. 297-301.

Malinga, J., Pathak, R., Mulwa, R., Amulaka, F., Tabu, I., Masinde, E., Atsiambo, W., Munene, M. and Cakir, M. (2010) A search for Russian wheat aphid resistance in the facing stem rust threat under African tropical environments. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Nelson, M.N., Moolhuijzen, P.M., Boersma, J.G., Chudy, M., Lesniewska, K., Bellgard, M., Oliver, R.P., Swiecicki, W., Wolko, B., Cowling, W.A. and Ellwood, S.R. (2010) Aligning a new reference genetic map of lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus. DNA Research, 17 (2). pp. 73-83.

Parkar, U., Traub, R.J., Vitali, S., Elliot, A., Levecke, B., Robertson, I.ORCID: 0000-0002-4255-4752, Geurden, T., Steele, J., Drake, B. and Thompson, R.C.A. (2010) Molecular characterization of Blastocystis isolates from zoo animals and their animal-keepers. Veterinary Parasitology, 169 (1-2). pp. 8-17.

Ricciardi, M., Tocho, E., Tacaliti, M.S., Vasicek, A., Giménez, D.O., Paglione, A., Simmonds, J., Snape, J.W., Cakir, M. and Castro, A.M. (2010) Mapping quantitative trait loci for resistance against Russian wheat aphid (Diuraphis noxia) in wheat (Triticum aestivum L.). Crop & Pasture Science, 61 (12). pp. 970-977.

Saqib, M., Nouri, S., Cayford, B., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Genome sequences and phylogenetic placement of two isolates of Bean common mosaic virus from Macroptilium atropurpureumin north-west Australia. Australasian Plant Pathology, 39 (2). pp. 184-191.

Scobie, M.N. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Identification of barley varieties by protein profiling. In: Zhang, G. and Li, C., (eds.) Genetics and Improvement of Barley Malt Quality. Springer Berlin Heidelberg, China, pp. 99-112.

Tan, J.C.H., Fosu-Nyarko, J. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Application of gene silencing for nematode control. In: Plant Health & Protection Research Symposium, 29 October, Perth, Western Australia.

Tan, K.C., Oliver, R.P., Solomon, P.S. and Moffat, C.S. (2010) Proteinaceous necrotrophic effectors in fungal virulence. Functional Plant Biology, 37 (10). pp. 907-912.

Tan, M.N.H., Vanstone, V.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Novel molecular diagnostic frame work for plant parasitic nematode pest of plant biosecurity concern-better and faster than classical taxonomy? In: Plant Health & Protection Research Symposium, 29 October, Perth, Western Australia.

Vitou, J., Cakir, M. and Edwards, O. (2010) Pre-border research for Australia on Russian wheat aphid. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Wang, K., Han, X., Dong, K., Gao, L., Li, H., Ma, W.ORCID: 0000-0002-1264-866X, Yan, Y. and Ye, X. (2010) Characterization of seed proteome in Brachypodium distachyon. Journal of Cereal Science, 52 (2). pp. 177-186.

Wang, M.J., Zhang, Y., Lin, Z.S., Ye, X.G., Yuan, Y.P., Ma, W.ORCID: 0000-0002-1264-866X and Xin, Z.Y. (2010) Development of EST-PCR markers for Thinopyrum intermedium chromosome 2Ai#2 and their application in characterization of novel wheat-grass recombinants. Theoretical and Applied Genetics, 121 (7). pp. 1369-1380.

Wright, D.G., Thomas, G.J., Loughman, R., Fosu-Nyarko, J. and Bullock, S. (2010) Detection of Fusarium graminearumin wheat grains in Western Australia. Australasian Plant Disease Notes, 5 (1). pp. 82-84.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Nouri, S., Coutts, B.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2010) Narcissus late season yellows virus and Vallota speciosa virus found infecting domestic and wild populations of Narcissus species in Australia. Archives of Virology, 155 (7). pp. 1171-1174.

Xie, Z.Z., Wang, C.Y., Wang, K., Wang, S.L., Li, X.H., Zhang, Z., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y.M. (2010) Molecular characterization of the celiac disease epitope domains in α-gliadin genes in Aegilops tauschii and hexaploid wheats (Triticum aestivum L.). Theoretical and Applied Genetics, 121 (7). pp. 1239-1251.

Zhang, G. and Li, C. (ED) (2010) Genetics and Improvement of Barley Malt Quality. Springer Berlin Heidelberg.

2009

Cakir, M., Conocono, E., Drake-Brockman, F., Waters, I., Rebetzke, G., Wilson, R., Barclay, I., McLean, R. and Setter, T. (2009) Molecular genetic mapping of terminal drought tolerance genes in wheat. In: Id-4, 11 - 16 October 2009, Shanghai, China

Cakir, M., Drake-Brockman, F., Shankar, M., Golzar, H., Kollehn, D., McLean, R., Bariana, H., Wilson, R., Barclay, I., Moore, C., Kuchel, H., Jones, M.ORCID: 0000-0001-5002-0227 and Loughman, R. (2009) Molecular mapping of rust resistance genes and marker-assisted breeding in wheat. In: BGRI 2009 Technical Workshop, 17 - 20 March 2009, Obregon, Sonora, Mexico.

Cakir, M., Lawson, W., Vitou, J., Kollehn, D., Ilbi, H., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2009) Pre-emptive breeding and molecular marker development for resistance to Russian wheat aphid in barley and wheat: An international collaboration. In: 14th Australian Barley Technical Symposium, September 13 - 16 2009, Sunshine Coast, QLD

Cakir, M., Vitou, J., Haley, S., Peairs, F., Mornhinweg, D., Lage, J., Kuchel, H., Jacobs, B., Barclay, I., Tolmay, V., Malinga, J., Edwards, O., Christopher, M. and Castro, A.M. (2009) Development Of molecular markers and Pre-emptive breeding for resistance to Russian wheat aphid in wheat And barley: An international collaboration. In: XVII International Plant and Animal Genomes Conference, 10 - 14 January 2009, Town & Country Convention Center, San Diego, CA

Cakir, M., Vitou, J., Kollehn, D., Lawson, W., Ilbi, H., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2009) A global effort in breeding for resistance to Russian wheat aphid in wheat and barley. In: 19th International Triticeae Mapping Initiative - 3rd COST Tritigen, 31 August - 4 September 2009, Clermont-Ferrand, France.

Collard, B., Mace, E., McPhail, M., Wenzl, P., Cakir, M., Fox, G., Poulsen, D. and Jordan, D. (2009) How accurate are the marker orders in crop linkage maps generated from large marker datasets? Crop and Pasture Science, 60 (4). pp. 362-372.

Francki, M.G. (2009) Genomics for wheat improvement. In: Molecular Techniques in Crop Improvement. Springer Netherlands, pp. 281-305.

Francki, M.G., Walker, E., Crawford, A.C., Broughton, S., Ohm, H.W., Barclay, I., Wilson, R.E. and McLean, R. (2009) Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers. Molecular Genetics and Genomics, 281 (2). pp. 181-191.

Gao, L., Wang, A., Li, X., Dong, K., Wang, K., Appels, R., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2009) Wheat quality related differential expressions of albumins and globulins revealed by two-dimensional difference gel electrophoresis (2-D DIGE). Journal of Proteomics, 73 (2). pp. 279-296.

Gummer, J., Banazis, M., Maker, G.ORCID: 0000-0003-1666-9377, Solomon, P., Oliver, R. and Trengove, R. (2009) Use of mass spectrometry for metabolite profiling and metabolomics. Australian Biochemist, 40 (3). pp. 5-8.

He, X.Y., He, Z.H., Ma, W.ORCID: 0000-0002-1264-866X, Appels, R. and Xia, X.C. (2009) Allelic variants of phytoene synthase 1 (Psy1) genes in Chinese and CIMMYT wheat cultivars and development of functional markers for flour colour. Molecular Breeding, 23 (4). pp. 553-563.

Jia, Q., Zhang, J.ORCID: 0000-0002-1623-4675, Westcott, S., Zhang, X-Q, Bellgard, M., Lance, R. and Li, C. (2009) GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional & Integrative Genomics, 9 (2). pp. 255-262.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2009) Plant biotechnology. In: Walker, J.M. and Rapley, R., (eds.) Molecular Biology and Biotechnology. The Royal Society of Chemistry, Cambridge, UK, pp. 272-306.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Rana, J., Fosu-Nyarko, J., Zhang, J.ORCID: 0000-0002-1623-4675, Perera, M.R. and Chamberlain, D. (2009) Towards developing transgenic resistance to nematodes in wheat. In: Riley, I.T., Nicol, J.M. and Dababat, A.A., (eds.) Cereal cyst nematodes: Status, research and outlook. Proceedings of the first Workshop of the International Cereal Cyst Nematode Initiative, 21-23 October 2009, Antalya, Turkey. CIMMYT, Ankara, Turkey, pp. 191-194.

Li, C., Cakir, M. and Lance, R. (2009) Genetic improvement of malting quality through conventional breeding and Marker-assisted selection. Advance Topics in Science and Technology in China . pp. 260-292.

Liu, Li, Wang, A., Appels, R., Ma, J., Xia, X., Lan, P., He, Z., Bekes, F., Yan, Y. and Ma, W.ORCID: 0000-0002-1264-866X (2009) A MALDI-TOF based analysis of high molecular weight glutenin subunits for wheat breeding. Journal of Cereal Science, 50 (2). pp. 295-301.

Mann, G., Diffey, S., Cullis, B., Azanza, F., Martin, D., Kelly, A., McIntyre, L., Schmidt, A., Ma, W.ORCID: 0000-0002-1264-866X, Nath, Z., Kutty, I., Leyne, P.E., Rampling, L., Quail, K.J. and Morell, M.K. (2009) Genetic control of wheat quality: interactions between chromosomal regions determining protein content and composition, dough rheology, and sponge and dough baking properties. Theoretical and Applied Genetics, 118 (8). pp. 1519-1537.

McNeil, M.D., Diepeveen, D.ORCID: 0000-0002-1535-8019, Wilson, R., Barclay, I., McLean, R., Chalhoub, B. and Appels, R. (2009) Haplotype analyses in wheat for complex traits: tracking the chromosome 3B and 7B regions associated with late maturity alpha amylase (LMA) in breeding programs. Crop and Pasture Science, 60 (5). pp. 463-471.

Mullan, D.J., Mirzaghaderi, G., Walker, E., Colmer, T.D. and Francki, M.G. (2009) Development of wheat–Lophopyrum elongatum recombinant lines for enhanced sodium 'exclusion' during salinity stress. Theoretical and Applied Genetics, 119 (7). pp. 1313-1323.

Paux, E., Gao, L-F, Faure, S., Choulet, F., Saintenac, C., McNeil, M., Balfourier, F., Roger, D., Sourdille, P., Gautier, V., Martinant, J-P, Cakir, M., Gandon, B., Krugman, T., Appels, R., Nevo, E., Jia, J. and Feuillet, C. (2009) Insertion Site-Based Polymorphism: A Swiss army knife for wheat genomics. In: 19th International Triticeae Mapping Initiative - 3rd COST Tritigen, 31 August - 4 September 2009, Clermont-Ferrand, France.

Peña, R.J., Xia, X.C., Liu, J.J., Ma, W.ORCID: 0000-0002-1264-866X, He, Z.H. and Liu, L. (2009) Allelic variation at the Glu-D3 locus in Chinese bread wheat and effects on dough properties, pan bread and noodle qualities. Cereal Research Communications, 37 (1). pp. 57-64.

Shearer, P.L., Sharp, M., Bonne, N., Clark, P. and Raidal, S.R. (2009) A blocking ELISA for the detection of antibodies to psittacine beak and feather disease virus (BFDV). Journal of Virological Methods, 158 (1-2). pp. 136-140.

Shearer, P.L., Sharp, M., Bonne, N., Clark, P. and Raidal, S.R. (2009) A quantitative, real-time polymerase chain reaction assay for beak and feather disease virus. Journal of Virological Methods, 159 (1). pp. 98-104.

Skillman, L.C., Bajsa, O., Ho, L., Santhanam, B., Kumar, M. and Ho, G.ORCID: 0000-0001-9190-8812 (2009) Influence of high gas production during thermophilic anaerobic digestion in pilot-scale and lab-scale reactors on survival of the thermotolerant pathogens Clostridium perfringens and Campylobacter jejuni in piggery wastewater. Water Research, 43 (13). pp. 3281-3291.

Wijayanto, T., Barker, S.J., Wylie, S.J.ORCID: 0000-0002-5639-7460, Gilchrist, D.G. and Cowling, W.A. (2009) Significant reduction of fungal disease symptoms in transgenic lupin (Lupinus angustifolius) expressing the anti-apoptotic baculovirus genep35. Plant Biotechnology Journal, 7 (8). pp. 778-790.

Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, R.A.C. (2009) Role of recombination in the evolution of host specialization within bean yellow mosaic virus. Phytopathology, 99 (5). pp. 512-518.

Xue, D., Huang, Youzong, Zhang, X-Q, Wei, K., Westcott, S., Li, C., Chen, M., Zhang, G. and Lance, R. (2009) Identification of QTLs associated with salinity tolerance at late growth stage in barley. Euphytica, 169 (2). pp. 187-196.

Yan, Y.M., Jiang, Y., An, X.L., Pei, Y.H., Li, X.H., Zhang, Y.Z., Wang, A.L., He, Z., Xia, X., Bekes, F. and Ma, W.ORCID: 0000-0002-1264-866X (2009) Cloning, expression and functional analysis of HMW glutenin subunit 1By8 gene from Italy pasta wheat (Triticum turgidum L. ssp. durum). Journal of Cereal Science, 50 (3). pp. 398-406.

2008

Cakir, M., Drake-Brockman, F., Ma, J., Jose, K., Connor, M., Naughton, J., Bussanich, J., Naisbitt, M., Shankar, M., McLean, R., Barclay, I., Wilson, R., Moore, C. and Loughman, R. (2008) Applications and challenges of marker-assisted selection in the Western Australian Wheat Breeding Program. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Cakir, M., Drake-Brockman, F., Ma, J., Paux, E., Jose, K., Connor, M., Naughton, J., Bussanich, J., Nisbett, M., Shankar, M., Moore, C., McLean, R., Wilson, R., Barclay, I., Roger, D., Gandon, B., Feuillet, C., Jones, M.ORCID: 0000-0001-5002-0227 and Loughman, R. (2008) Marker development, high-throughput and logistics of MAS applications in a large wheat breeding program. In: XVI International Plant and Animal Genome Conference, 12 - 16 January 2008, Town & Country Convention Center, San Diego, CA

Cakir, M., Drake-Brockman, F., Shankar, M., Golzar, H., McLean, R., Bariana, H., Wilson, R., Barclay, I., Moore, C., Jones, M.ORCID: 0000-0001-5002-0227 and Loughman, R. (2008) Molecular mapping and improvement of rust resistance in the Australian wheat germaplasma. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Cakir, M., Vitou, J., Haley, S., Edwards, O., Peairs, F., Mornhinweg, D., Kuchel, H., Jacobs, B., Barclay, I., Malinga, J. and Castro, A. (2008) Pre-breeding for resistance to Russian Wheat Aphid, Diuraphis noxia, in wheat and barley in Australia: Germplasm characterization against multiple biotypes. In: 23rd International Congress of Entomology (ICE) 2008, 6 - 12 July 2008, Durban, South Africa

Charles, M., Belcram, H., Just, J., Huneau, C., Viollet, A., Couloux, A., Segurens, B., Carter, M., Huteau, V., Coriton, O., Appels, R., Samain, S. and Chalhoub, B. (2008) Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics, 180 (2). pp. 1071-1086.

Gustafson, P., Anugrahwati, D.R., Shepherd, K.W., Verlin, D.C., Zhang, P., Mirzaghaderi, G., Walker, E., Francki, M.G. and Dundas, I.S. (2008) Isolation of wheat–rye 1RS recombinants that break the linkage between the stem rust resistance geneSrRand secalin. Genome, 51 (5). pp. 341-349.

Hua, L., Sivasithamparam, K., Barbetti, M.J., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Kuo, J. (2008) Cytological responses in the hypersensitive reaction in cotyledon and stem tissues of Brassica napus after infection by Leptosphaeria maculans. Journal of General Plant Pathology, 74 (2). pp. 120-124.

Jiang, C., Pei, Y-H, Zhang, Y., Li, X., Yao, D., Yan, Y., Ma, W.ORCID: 0000-0002-1264-866X, Hsam, S.L.K. and Zeller, F. J. (2008) Molecular cloning and characterization of four novel LMW glutenin subunit genes from Aegilops longissima, Triticum dicoccoides and T. zhukovskyi. Hereditas, 145 (2). pp. 92-98.

Li, D., Barclay, I., Jose, K., Stefanova, K. and Appels, R. (2008) A mutation at the Ala122 position of acetohydroxyacid synthase (AHAS) located on chromosome 6D of wheat: improved resistance to imidazolinone and a faster assay for marker assisted selection. Molecular Breeding, 22 (2). pp. 217-225.

Li, X., Ma, W.ORCID: 0000-0002-1264-866X, Gao, L., Zhang, Y., Wang, A., Ji, K., Wang, K., Appels, R. and Yan, Y. (2008) A novel chimeric Low-Molecular-Weight glutenin subunit gene from the wild relatives of wheat Aegilops kotschyi and Ae. juvenalis: Evolution at the Glu-3 Loci. Genetics, 180 (1). pp. 93-101.

McNeil, M.D., Kota, R., Paux, E., Dunn, D., McLean, R., Feuillet, C., Li, D., Kong, X., Lagudah, E., Zhang, J.C., Jia, J.Z., Spielmeyer, W., Bellgard, M. and Appels, R. (2008) BAC-derived markers for assaying the stem rust resistance gene, Sr2, in wheat breeding programs. Molecular Breeding, 22 (1). pp. 15-24.

Mortimer-Jones, S.M., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Jones, R.A.C. and Dwyer, G. (2008) Development and validation of a high throughput, one-step, quantitative real-time RT-PCR assay for the simultaneous detection of PLRV, PVX, PVS and TSWV with a rapid RNA extraction method directly from bulked potato tuber samples. In: 8th Plant Virology Workshop, 19 - 22 November 2008, Rotorua, New Zealand.

Nelson, M., Boersma, J., Chudy, M., Lesniewska, K., Ellwood, S., Phan, H., Moolhuijzen, P., Bellgard, M., Oliver, R., Swiecicki, W., Wolko, B. and Cowling, W. (2008) A dense reference map of the Lupinus Angustifolius L. Genome: A foundation for building lupin genome research. In: 12th International Lupin Conference, 14 - 18 September, Perth, Western Australia pp. 255-258.

Palmer, C.S., Thompson, R.C.A., Traub, R.J., Rees, R. and Robertson, I.D.ORCID: 0000-0002-4255-4752 (2008) National study of the gastrointestinal parasites of dogs and cats in Australia. Veterinary Parasitology, 151 (2-4). pp. 181-190.

Palmer, C.S., Traub, R.J., Robertson, I.D.ORCID: 0000-0002-4255-4752, Devlin, G., Rees, R. and Thompson, R.C.A. (2008) Determining the zoonotic significance of Giardia and Cryptosporidium in Australian dogs and cats. Veterinary Parasitology, 154 (1-2). pp. 142-147.

Paux, E., Gao, L., Faure, S., Choulet, F., Roger, D., Chevalier, K., Saintenac, C., Balrourier, F., Paux, K., Cakir, M., Brunel, D., Le-Paslier, M-C, Krugman, T., Gandon, B., Nevo, E., Bernard, M., Sourdille, P. and Feuillet, C. (2008) Insertion site-based polymorphism: A Swiss army knife for wheat genomics. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Perera, M.R., Flores-Vargas, R.D. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2008) First record of infection of Papaya trees with root-knot nematode (Meloidogyne javanica) in Australia. Australasian Plant Disease Notes, 3 (1). pp. 87-88.

Piper, E.K., Jonsson, N.N., Bruyeres, A., Jarrett, S., Jones, M.ORCID: 0000-0001-5002-0227 and Lew-Tabor, A.E. (2008) Peripheral cellular and antibody responses of tick-resistant and tick-susceptible cattle following infestation with the cattle tick, Rhipipcephalus microplus. In: IV International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina.

Powers-Martin, K., Phillips, J.K., Biancardi, V.C. and Stern, J.E. (2008) Heterogeneous distribution of basal cyclic guanosine monophosphate within distinct neuronal populations in the hypothalamic paraventricular nucleus. AJP: Regulatory, Integrative and Comparative Physiology, 295 (4). R1341-R1350.

Rännäli, M., Czekaj, V., Jones, R.A.C., Fletcher, J.D., Davis, R.I., Mu, L., Dwyer, G.I., Coutts, B.A. and Valkonen, J.P.T. (2008) Molecular Genetic Characterization ofSweet potato virus G(SPVG) Isolates from Areas of the Pacific Ocean and Southern Africa. Plant Disease, 92 (9). pp. 1313-1320.

Setter, T. L., Waters, I., Sharma, S.K., Singh, K.N., Kulshreshtha, N., Yaduvanshi, N.P.S., Ram, P.C., Singh, B.N., Rane, J., McDonald, G., Khabaz-Saberi, H., Biddulph, T.B., Wilson, R., Barclay, I., McLean, R. and Cakir, M. (2008) Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils. Annals of Botany, 103 (2). pp. 221-235.

Shankar, M., McLean, R., Cakir, M., Golzar, H., Bariana, H. and Loughman, R. (2008) Genetics of rust resistance in the Australian wheat germplasm. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Shankar, M., Walker, E., Golzar, H., Loughman, R., Wilson, R.E. and Francki, M.G. (2008) Quantitative trait loci for seedling and adult plant resistance to Stagonospora nodorum in wheat. Phytopathology, 98 (8). pp. 886-893.

Traub, R.J., Inpankaew, T., Sutthikornchai, C., Sukthana, Y. and Thompson, R.C.A. (2008) PCR-based coprodiagnostic tools reveal dogs as reservoirs of zoonotic ancylostomiasis caused by Ancylostoma ceylanicum in temple communities in Bangkok. Veterinary Parasitology, 155 (1-2). pp. 67-73.

Wylie, S.ORCID: 0000-0002-5639-7460, Coutts, B., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (2008) Bean yellow mosaic virus: Its phylogeny, biological properties and evolution in response to plant domestication. In: 9th International Congress of Plant Pathology ICPP 2008, 24 - 29 August 2008, Torino, Italy.

Wylie, S.ORCID: 0000-0002-5639-7460 and Jones, M.ORCID: 0000-0001-5002-0227 (2008) Bean yellow mosaic virus in lupins: Strains, losses, epidemiology and control. In: 12th International Lupin Conference, 14 - 18 September 2008, Fremantle, Western Australia.

Wylie, S.J.ORCID: 0000-0002-5639-7460, Coutts, B.A., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (2008) Phylogenetic analysis of Bean yellow mosaic virus isolates from four continents: Relationship between the seven groups found and their hosts and origins. Plant Disease, 92 (12). pp. 1596-1603.

Zhang, X-Q, Li, C., Tay, A., Lance, R., Mares, D., Cheong, J., Cakir, M., Ma, J. and Appels, R. (2008) A new PCR-based marker on chromosome 4AL for resistance to pre-harvest sprouting in wheat (Triticum aestivum L.). Molecular Breeding, 22 (2). pp. 227-236.

Zhao, X., Yang, Y., He, Z., Lei, Z., Ma, W.ORCID: 0000-0002-1264-866X, Sun, Q. and Xia, X. (2008) Characterization of novel LMW-GS genes at Glu-D3 locus on chromosome 1D in Aegilops tauschii. Hereditas, 145 (5). pp. 238-250.

2007

Brereton, H.M., Chamberlain, D., Yang, R.ORCID: 0000-0003-2563-2015, Tea, M., McNeil, S., Coster, D.J. and Williams, K.A. (2007) Single chain antibody fragments for ocular use produced at high levels in a commercial wheat variety. Journal of Biotechnology, 129 (3). pp. 539-546.

Cakir, M. (2007) AWCMMP component : Implementation/​validation of molecular markers in DAFWA (VI 12) : A final report prepared for the Grains Research and Development Corporation. WA: Dept. of Agriculture and Food, Perth, Western Australia.

Cakir, M., McLean, R., Wilson, R., Barclay, I., Moore, C., Loughman, R., Haley, S., Kidwell, K., Anderson, J., Sorrells, M., Manes, Y., Hayden, M., Feuillet, C., William, M., Hunter, A. and Bellgard, M. (2007) Genome level targeted breeding in wheat. In: Plant & Animal Genomes XV Conference, 13 - 17 January 2007, San Diego, CA

Donini, P., Li, X., Zhang, Y., Gao, L., Wang, A., Ji, K., He, Z., Appels, R., Ma, W.ORCID: 0000-0002-1264-866X and Yan, Y. (2007) Molecular cloning, heterologous expression, and phylogenetic analysis of a novel y-type HMW glutenin subunit gene from the G genome ofTriticum timopheevi. Genome, 50 (12). pp. 1130-1140.

Dwyer, G.I., Gibbs, M.J., Gibbs, A.J. and Jones, R.A.C. (2007) Wheat streak mosaic virus in Australia: Relationship to isolates from the Pacific Northwest of the USA and its dispersion via seed transmission. Plant Disease, 91 (2). pp. 164-170.

Edwards, M.A., Loxley, R.A., Williams, A., Connor, M. and Phillips, J.K. (2007) Lack of functional expression of NMDA receptors in PC12 cells. NeuroToxicology, 28 (4). pp. 876-885.

Francki, M. and Appels, R. (2007) Comparative genomics and crop improvement. In: Brown, J.R., (ed.) Comparative Genomics: Basic and applied research. CRC Press, Boca Raton, FL, pp. 321-340.

Gupta, S.ORCID: 0000-0002-4948-4689 and Loughman, R. (2007) Future issues with breeding for disease resistance in Australia – a vision. In: 13th Australian Barley Technical Symposium, 26 - 30 August, Perth, Western Australia

Jones, R.A.C. and Dwyer, G.I. (2007) Detection of Sweet potato chlorotic fleck virus andSweet potato feathery mottle virus– strain O in Australia. Australasian Plant Pathology, 36 (6). pp. 591-594.

Ma, W.ORCID: 0000-0002-1264-866X, Sutherland, M.W., Kammholz, S., Banks, P., Brennan, P.S., Bovill, W. and Daggard, G. (2007) Wheat flour protein content and water absorption analysis in a doubled haploid population. Journal of Cereal Science, 45 (3). pp. 302-308.

Mackie, J.M., Musial, J.M., Armour, D.J., Phan, H.T.T., Ellwood, S., Aitken, K.S. and Irwin, J.A.G. (2007) Identification of QTL for reaction to three races of Colletotrichum trifolii and further analysis of inheritance of resistance in autotetraploid lucerne. Theoretical and Applied Genetics, 114 (8). pp. 1417-1426.

McLean, R., Barclay, I., Wilson, R., Appels, R., Cakir, M., Devlin, G. and Li, D. (2007) Marker implementation in the Department of Agriculture, Western Australia wheat breeding program. In: Buck, H.T., Nisi, J.E. and Salomón, N., (eds.) Wheat Production in Stressed Environments. Springer Netherlands, pp. 737-746.

Moolhuijzen, P., Dunn, D.S., Bellgard, M., Carter, M., Jia, J., Kong, X., Gill, B.S., Feuillet, C., Breen, J. and Appels, R. (2007) Wheat genome structure and function: genome sequence data and the International Wheat Genome Sequencing Consortium. Australian Journal of Agricultural Research, 58 (6). pp. 470-475.

Mortimer-Jones, S., Dwyer, G.I., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2007) Localisation of viruses in tuber tissues of potato. In: EAPR Virology 2007, Abstracts of the 13th European Association for Potato Research Virology Section Meeting, 17 - 22 June 2007, Aviemore, Scotland, UK p. 66.

Mullan, D.J., Colmer, T.D. and Francki, M.G. (2007) Arabidopsis–rice–wheat gene orthologues for Na+ transport and transcript analysis in wheat–L. elongatum aneuploids under salt stress. Molecular Genetics and Genomics, 277 (2). pp. 199-212.

O'Keefe, D.C., Berryman, D.I., Coutts, B.A. and Jones, R.A.C. (2007) Lack of seed coat contamination with cucumber mosaic virus in lupin permits reliable, large-scale detection of seed transmission in seed samples. Plant Disease, 91 (5). pp. 504-508.

Schoep, T.D. and Gregg, K. (2007) Isolation and characterization of putative Pseudobutyrivibrio ruminis promoters. Microbiology, 153 (9). pp. 3071-3080.

Setter, T.L., Singh, K.N., Kulshreshtha, N., Sharma, S.K., Yaduvanshi, N.P.S., Ram, P.C., Singh, B.N., Rane, J., McDonald, G., Khabaz-Saberi, H., Biddulph, B., Wilson, R., Barclay, I., McLean, R., Cakir, M., Drake-Brockman, F. and Waters, I. (2007) Review of wheat improvement for waterlogging tolerance in Australia and India: The importance of anaerobiosis and element/microelement toxicities associated with different soils. In: 9th Meeting of the International Society of Plant Anaerobiosis (ISPA) Conference, 17 - 23 Nov 2007, Matsushima, Japan.

Stensvold, C.R., Suresh, G.K., Tan, K.S.W., Thompson, R.C.A., Traub, R.J., Viscogliosi, E., Yoshikawa, H. and Clark, C.G. (2007) Terminology for Blastocystis subtypes – a consensus. Trends in Parasitology, 23 (3). pp. 93-96.

Stewart, M., Bonne, N., Shearer, P., Khalesi, B., Sharp, M. and Raidal, S. (2007) Baculovirus expression of beak and feather disease virus (BFDV) capsid protein capable of self-assembly and haemagglutination. Journal of Virological Methods, 141 (2). pp. 181-187.

Tokita, M., Kiyoshi, T. and Armstrong, K.N. (2007) Evolution of craniofacial novelty in parrots through developmental modularity and heterochrony. Evolution & Development, 9 (6). pp. 590-601.

Webster, C.G., Coutts, B.A., Jones, R.A.C., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2007) Virus impact at the interface of an ancient ecosystem and a recent agroecosystem: studies on three legume-infecting potyviruses in the southwest Australian floristic region. Plant Pathology, 56 (5). pp. 729-742.

Zhang, X-Q (2007) Dissecting a region of barley chromosome 5HL using synteny with rice genomic sequences. In: 13th Australian Barley Technical Symposium, 26 - 30 August, Perth, Western Australia.

Zhao, X.L., Ma, W.ORCID: 0000-0002-1264-866X, Gale, K.R., Lei, Z.S., He, Z.H., Sun, Q.X. and Xia, X.C. (2007) Identification of SNPs and development of functional markers for LMW-GS genes at Glu-D3 and Glu-B3 loci in bread wheat (Triticum aestivum L.). Molecular Breeding, 20 (3). pp. 223-231.

Zhao, X.L., Xia, X.C., He, Z.H., Lei, Z.S., Appels, R., Yang, Y., Sun, Q.X. and Ma, W.ORCID: 0000-0002-1264-866X (2007) Novel DNA variations to characterize low molecular weight glutenin Glu-D3 genes and develop STS markers in common wheat. Theoretical and Applied Genetics, 114 (3). pp. 451-460.

2006

Bovill, W., Ma, W.ORCID: 0000-0002-1264-866X, Ritter, K., Collard, B.C.Y., Davis, M., Wildermuth, G.B. and Sutherland, M.W. (2006) Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos'. Plant Breeding, 125 (6). pp. 538-543.

Cakir, M. (2006) Physiological and genetic studies to improve waterlogging tolerance in wheat. In: International Triticeae Mapping Initiative (ITMI) Workshop 2006, August 2006, Adelaide, South Australia

Cakir, M., McLean, R.B., Shankar, M.N., Drake-Brockman, F., Bariana, H.R. and Appels, R. (2006) Identifying closely linked SSR markers to Sr32 and Sr33 stem rust genes in wheat. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand

Ellwood, S.R., Kamphuis, L.G. and Oliver, R.P. (2006) Identification of Sources of Resistance toPhoma medicaginisIsolates inMedicago truncatulaSARDI Core Collection Accessions, and Multigene Differentiation of Isolates. Phytopathology, 96 (12). pp. 1330-1336.

Fox, G.P., Kelly, A.M., Cakir, M., Bloustein, G., Poulsen, D.M.E., Inkerman, P.A. and Henry, R.J. (2006) Genetic Impacts of the Hull on Barley Grain Quality. Journal of the Institute of Brewing, 112 (2). pp. 101-107.

Friesen, T.L., Stukenbrock, E.H., Liu, Z., Meinhardt, S., Ling, H., Faris, J.D., Rasmussen, J.B., Solomon, P.S., McDonald, B.A. and Oliver, R.P. (2006) Emergence of a new disease as a result of interspecific virulence gene transfer. Nature Genetics, 38 (8). pp. 953-956.

Gupta, S.ORCID: 0000-0002-4948-4689, Li, C., Cakir, M., Loughman, R., Lance, R., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2006) Resistances for leaf blight diseases in barley populations. In: 3rd International Workshop on Barley Leaf Blights, 23 - 27 July, Edmonton, AB, Canada.

Gustafson, J.P., Francki, M.G., Walker, E., Forster, J.W., Spangenberg, G. and Appels, R. (2006) Fructosyltransferase and invertase genes evolved by gene duplication and rearrangements: rice, perennial ryegrass, and wheat gene families. Genome, 49 (9). pp. 1081-1091.

Lei, Z.S., Gale, K.R., He, Z.H., Gianibelli, C., Larroque, O., Xia, X.C., Butow, B.J. and Ma, W.ORCID: 0000-0002-1264-866X (2006) Y-type gene specific markers for enhanced discrimination of high-molecular weight glutenin alleles at the Glu-B1 locus in hexaploid wheat. Journal of Cereal Science, 43 (1). pp. 94-101.

Li, C., Lance, R., Tarr, A., Harasymow, S., Gupta, S.ORCID: 0000-0002-4948-4689, Cakir, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Appels, R. (2006) Marker assisted breeding in barley: the winners and the losers. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Appels, R. and Bellgard, M. (2006) Erratum: LegumeDB bioinformatics resource: comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species. Genome, 49 (9). pp. 1206-1207.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Appels, R. and Bellgard, M. (2006) LegumeDB1 bioinformatics resource: Comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species. Genome, 49 (6). pp. 689-699.

Pearce, R., Gupta, S.ORCID: 0000-0002-4948-4689, Bradley, R. and Loughman, R. (2006) Pathogen Virulence for Spot-type Net Blotch (Pyrenophora teres) on barley in Western Australia. In: 3rd International Workshop on Barley Leaf Blights, 23 - 27 July, Edmonton, AB, Canada.

Phan, H.T.T., Ellwood, S.R., Ford, R., Thomas, S. and Oliver, R. (2006) Differences in syntenic complexity between Medicago truncatula with Lens culinaris and Lupinus albus. Functional Plant Biology, 33 (8). p. 775.

Powers-Martin, K., McKitrick, D.J., Arnolda, L.F. and Phillips, J.K. (2006) Distinct subpopulations of cyclic guanosine monophosphate (cGMP) and neuronal nitric oxide synthase (nNOS) containing sympathetic preganglionic neurons in spontaneously hypertensive and Wistar-Kyoto rats. The Journal of Comparative Neurology, 497 (4). pp. 566-574.

Saqib, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (2006) Candidatus Phytoplasma australiense is associated with diseases of red clover and paddy melon in south-west Australia. Australasian Plant Pathology, 35 (2). pp. 283-285.

Smith, T.N., Jones, R.A.C. and Wylie, S.J.ORCID: 0000-0002-5639-7460 (2006) Genetic diversity of the nucleocapsid gene of Iris yellow spot virus. Australasian Plant Pathology, 35 (3). pp. 359-362.

Smith, T.N., Wylie, S.J.ORCID: 0000-0002-5639-7460, Coutts, B.A. and Jones, R.A.C. (2006) Localized distribution of Iris yellow spot virus within leeks and its reliable Large-scale detection. Plant Disease, 90 (6). pp. 729-733.

Wenzl, P., Li, H., Carling, J., Zhou, M., Raman, H., Paul, E., Hearnden, P., Maier, C., Xia, L., Caig, V., Ovesná, J., Cakir, M., Poulsen, D., Wang, J., Raman, R., Smith, K.P., Muehlbauer, G.J., Chalmers, K.J., Kleinhofs, A., Huttner, E. and Kilian, A. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics, 7 (1).

Zhang, X-Q and Powles, S.B. (2006) Six amino acid substitutions in the carboxyl-transferase domain of the plastidic acetyl-CoA carboxylase gene are linked with resistance to herbicides in a Lolium rigidum population. New Phytologist, 172 (4). pp. 636-645.

Zhang, X-Q and Powles, S.B. (2006) The molecular bases for resistance to acetyl co-enzyme A carboxylase (ACCase) inhibiting herbicides in two target-based resistant biotypes of annual ryegrass (Lolium rigidum). Planta, 223 (3). pp. 550-557.

Zhao, X.L., Xia, X.C., He, Z.H., Gale, K.R., Lei, Z.S., Appels, R. and Ma, W.ORCID: 0000-0002-1264-866X (2006) Characterization of three low-molecular-weight Glu-D3 subunit genes in common wheat. Theoretical and Applied Genetics, 113 (7). pp. 1247-1259.

2005

Appels, R., Ma, W.ORCID: 0000-0002-1264-866X, Verbyla, A., Cakir, M., Francki, M., Carter, M., Li, C., Lance, R., Wilson, R., McLean, R., Barclay, I. and Ryan, K. (2005) Molecular markers, wheat quality and accelerated breeding technologies. In: Chung, O.K. and Lookhart, G.L., (eds.) International Wheat Quality Conference Proceedings. Grain Industry Alliance, University of Wisconsin, Madison, pp. 59-64.

Bayliss, K.L.ORCID: 0000-0002-4431-3389, Saqib, M., Dell, B., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Hardy, G.E.St.J. (2005) First record of 'Candidatus Phytoplasma australiense' in Paulownia trees. Australasian Plant Pathology, 34 (1). pp. 123-124.

Cakir, M., Appels, R., Waters, I., Verbyla, A., Drake-Brockman, F., Carter, M. and Setter, T. (2005) Mapping QTLs For waterlogging tolerance in wheat. In: Plant & Animal Genome XIII Conference, 15 - 19 January 2005, San Diego, CA

Cogan, N.O.I., Smith, K.F., Yamada, T., Francki, M.G., Vecchies, A.C., Jones, E.S., Spangenberg, G.C. and Forster, J.W. (2005) QTL analysis and comparative genomics of herbage quality traits in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics, 110 (2). pp. 364-380.

Dietzgen, R.G., Twin, J., Talty, J., Selladurai, S., Carroll, M.L., Coutts, B.A., Berryman, D.I. and Jones, R.A.C. (2005) Genetic variability of Tomato spotted wilt virus in Australia and validation of real time RT-PCR for its detection in single and bulked leaf samples. Annals of Applied Biology, 146 (4). pp. 517-530.

Gupta, S.ORCID: 0000-0002-4948-4689, Limadinata, V., Li, C., Lance, R., Loughman, R., Cakir, M. and Appels, R. (2005) Identification of novel resistances against spot-type net blotch (Pyrenophora teres f. maculata) in Canadian barleys. In: 12th Australian Barley Technical Symposium, 11 - 14 September 2005, Hobart, Tasmania

Jones, M.ORCID: 0000-0001-5002-0227, Scobie, M., Brian, S., Cakir, M. and Nyarko, J.F. (2005) AFLP mapping of the lupen. In: 2nd Australian Model Legume Workshop, 5 - 8 April 2005, Rottnest Island, Western Australia

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) Biosecurity and Biosafety: Challenges for the region. In: Sarawak Bio Symposium, 8 - 9 March 2005, Sarawak, Borneo.

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Berryman, D., Scobie, M., Webster, C.G., Wylie, S.ORCID: 0000-0002-5639-7460 and Gregg, K. (2005) Detection of mutations and their application in plant breeding. In: Mutation Detection 2005: HUGO VIII International Symposium on Mutations in the Genome, 31 May - 4 June 2005, Santorini, Greece.

Jones, R.A.C., Coutts, B.A., Mackie, A.E. and Dwyer, G.I. (2005) Seed transmission of Wheat streak mosaic virus shown unequivocally in wheat. Plant Disease, 89 (10). pp. 1048-1050.

Mullan, D.J., Platteter, A., Teakle, N.L., Appels, R., Colmer, T.D., Anderson, J.M. and Francki, M.G. (2005) EST-derived SSR markers from defined regions of the wheat genome to identifyLophopyrum elongatumspecific loci. Genome, 48 (5). pp. 811-822.

Perera, M.R., Bayliss, K.L.ORCID: 0000-0002-4431-3389 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) New Australian record for infection of trees in Paulownia plantations by root-knot nematodes. In: 15th Australasian Plant Pathology Society Conference, 26-29 September 2005, Geelong, Vic..

Perera, M.R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Vanstone, V. (2005) Hidden enemies of crop plants: Developing novel methods to identify plant parasitic nematodes. In: 15th Biennial Conference. Australasian Plant Pathology Society (APPS), 26 - 30 September 2005, Geelong, VIC.

Perera, M.R., Vanstone, V.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) A novel approach to identify plant parasitic nematodes using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 19 (11). pp. 1454-1460.

Perera, M.R., Vanstone, V.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) A novel approach to identify plant-parasitic nematodes using MALDI-TOF mass spectrometry (Abstracts: Society of Nematologists 44th Annual Meeting, Fort Lauderdale, Florida, 9-13 July 2005). Journal of Nematology, 37 (3). pp. 387-388.

Raman, H., Zhang, K., Cakir, M., Appels, R., Garvin, D.F., Maron, L.G., Kochian, L.V., Moroni, J.S., Raman, R., Imtiaz, M., Drake-Brockman, F., Waters, I., Martin, P., Sasaki, T., Yamamoto, Y., Matsumoto, H., Hebb, D.M., Delhaize, E. and Ryan, P.R. (2005) Molecular characterization and mapping of ALMT1, the aluminium-tolerance gene of bread wheat (Triticum aestivum L.). Genome, 48 (5). pp. 781-791.

Ramsay, K., Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) Gene expression of early stages of giant cells induced by meloidogyne javanica using Laser Capture Microdissection (Abstracts: Society of Nematologists 44th Annual Meeting, Fort Lauderdale, Florida, 9-13 July 2005). Journal of Nematology, 37 (3). p. 389.

Wang, Z., Ramsay, K. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2005) Construction of a giant cell specific cDNA library using laser capture microdissection. In: 15th Biennial Conference. Australasian Plant Pathology Society (APPS), 26 - 30 September 2005, Geelong, VIC.

2004

Appels, R., Cakir, M., Francki, M., Carter, M., Li, C., Lance, R., Wilson, R., McLean, R., Barclay, I., Loughman, R. and Ryan, K. (2004) Molecular markers and accelerated breeding technologies. In: 54th Australian Cereal Chemistry Conference: Cereals 2004, 21 - 24 September 2004, Canberra, Australia

Cakir, M., Appels, R., Hunter, A., Schibeci, D., Li, C. and Bellgard, M. (2004) A consensus molecular genetic map of barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 144-148.

Cakir, M., Bellgard, M., Appels, R. and Francki, M. (2004) Looking through genomics: Concepts and technologies for plant and animal genomics. Functional & Integrative Genomics, 4 (2). pp. 71-73.

Cakir, M., Li, C., Lance, R., Barclay, I., McLean, R., Wilson, R. and Appels, R. (2004) DNA-based technologies in wheat and barley breeding. In: Plant & Animal Genomes XII Conference, 10 - 14 January 2004, San Diego, CA.

Cakir, M., Wallwork, H., Gupta, S.ORCID: 0000-0002-4948-4689, Moody, D., Williams, K. and Li, C. (2004) Identification of a new adult plant resistance gene for scald (Rhynchosporium secalis) in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic

Carter, M., Li, D., Cakir, M., McLean, R., Wilson, R., Barclay, I., Loughman, R. and Appels, R. (2004) High-throughput technologies for marker-assisted selection in wheat. In: Plant & Animal Genomes XII Conference, 10 - 14 January 2004, San Diego, CA.

Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M. and Appels, R. (2004) Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Functional & Integrative Genomics, 4 (2). pp. 118-130.

Gupta, S.ORCID: 0000-0002-4948-4689, Wielinga, C., Li, C., Cakir, M., Platz, G., Loughman, R., Lance, R. and Appels, R. (2004) Gene distribution and SSR markers linked with net type net blotch resistance in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 668-673.

Hollams, A.G., Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) In situ analysis of gene expression in Meloidogyne javanica feeding cells. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Li, C., Ni, P., Francki, M., Hunter, A., Zhang, Y., Schibeci, D., Li, H., Tarr, A., Wang, J., Cakir, M., Yu, J., Bellgard, M., Lance, R. and Appels, R. (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Functional & Integrative Genomics, 4 (2). pp. 84-93.

Loo, H.P., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Siddique, K., Whitney, D., Tanveer, K. and Dwyer, G.I. (2004) Application to Medicago truncatula genome data for chickpea improvement. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Paynter, B.H., Cakir, M., Eckermann, P.J. and Li, C. (2004) Improving the plumpness and yield of barley in Western Australia. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 559-565.

Perera, M.R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) A wound-inducible promoter that drives gene expression in plants after insect attack. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Perera, M.R., Vanstone, V. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) A novel approach to identify plant parasitic nematodes using MALDI-TOF mass spectrometry. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Ramsay, K., Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes. Molecular Plant Pathology, 5 (6). pp. 587-592.

Ratanasanobon, K.N., Wylie, S.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) In planta transformation of narrow-leafed lupin (Lupinus angustifolius) seedlings. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Saqib, M., Wylie, S.ORCID: 0000-0002-5639-7460, Fosu-Nyarko, J., Smith, T. and Jones, R.G. (2004) Molecular dissection of virus resistance using Medicago truncatula. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) Gene expression in giant cells induced in host plant roots by meloidognyne javanica. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Wang, Z., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Ramsay, K. (2004) Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Webster, C.A., Wylie, S.ORCID: 0000-0002-5639-7460, Chen, J-Y, Kenworthy, W.D. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) Towards highly parallel tests for plant virus diagnosis. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Webster, C.G., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) Diagnosis of plant viral pathogens. Current Science, 86 (12). pp. 1604-1607.

Wylie, S.ORCID: 0000-0002-5639-7460, Welsh, B., Hodgson, L., Chapple, S., Fletcher, N., Barker, S., Smith, P. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2004) Transgenic lupin cultivar immune to bean yellow mosaic virus. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Xiao, L., Ryan, U.M.ORCID: 0000-0003-2710-9324, Graczyk, T.K., Limor, J., Li, L., Kombert, M., Junge, R., Sulaiman, I., Zhou, L., Arrowood, M.J., Koudela, B., Modry, D. and Lal, A.A. (2004) Genetic diversity of Cryptosporidium spp. in captive reptiles. Applied and Environmental Microbiology, 70 (2). pp. 891-899.

Zhou, L., Fayer, R., Trout, J.M., Ryan, U.ORCID: 0000-0003-2710-9324, Schaefer, F.W. and Xiao, L. (2004) Genotypes of Cryptosporidium Species Infecting Fur-Bearing Mammals Differ from Those of Species Infecting Humans. Applied and Environmental Microbiology, 70 (12). pp. 7574-7577.

2003

Ablett, G.A., Karakousis, A., Banbury, L., Cakir, M., Holton, T.A., Langridge, P. and Henry, R.J. (2003) Application of SSR markers in the construction of Australian barley genetic maps. Australian Journal of Agricultural Research, 54 (12). pp. 1187-1195.

Boyd, W.J.R., Li, C.D., Grime, C.R., Cakir, M., Potipibool, S., Kaveeta, L., Men, S., Kamali, M.R.J., Barr, A.R., Moody, D.B., Lance, R.C.M., Logue, S.J., Raman, H. and Read, B.J. (2003) Conventional and molecular genetic analysis of factors contributing to variation in the timing of heading among spring barley (Hordeum vulgare L.) genotypes grown over a mild winter growing season. Australian Journal of Agricultural Research, 54 (12). pp. 1277-1301.

Cakir, M. and Appels, R. (2003) Accelerated wheat breeding using molecular markers. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Cakir, M., Appels, R., Francki, M., Li, C., Carter, M., Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Lance, R., Wilson, R., McLean, R. and Barclay, I. (2003) Candidate gene markers for using in wheat and barley breeding programs. In: XIX International Congress of Genetics, 6 - 11 July, Melbourne, Australia

Cakir, M., Gupta, S.ORCID: 0000-0002-4948-4689, Platz, G.J., Ablett, G.A., Loughman, R., Emebiri, L.C., Poulsen, D., Li, C.D., Lance, R.C.M., Galwey, N.W., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Appels, R. (2003) Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1369-1377.

Cakir, M., Poulsen, D., Galwey, N.W., Ablett, G.A., Chalmers, K.J., Platz, G.J., Park, R.F., Lance, R.C.M., Panozzo, J.F., Read, B.J., Moody, D.B., Barr, A.R., Johnston, P., Li, C.D., Boyd, W.J.R., Grime, C.R., Appels, R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Langridge, P. (2003) Mapping and QTL analysis of the barley population Tallon × Kaputar. Australian Journal of Agricultural Research, 54 (12). pp. 1155-1162.

Cakir, M., Spackman, M., Wellings, C.R., Galwey, N.W., Moody, D.B., Poulsen, D., Ogbonnaya, F.C. and Vivar, H. (2003) Molecular mapping as a tool for pre-emptive breeding for resistance to the exotic barley pathogen, Puccinia striiformis f. sp. hordei. Australian Journal of Agricultural Research, 54 (12). pp. 1351-1357.

Carter, M., Drake-Brockman, F., Cakir, M., Jones, M.ORCID: 0000-0001-5002-0227 and Appels, R. (2003) Application of a novel approach for the conversion of RFLP markers into PCR based markers in wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Dwyer, G.I., Njeru, R., Williamson, S., Fosu-Nyarko, J., Hopkins, R., Jones, R.A.C., Waterhouse, P.M. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2003) The complete nucleotide sequence of Subterranean clover mottle virus. Archives of Virology, 148 (11). pp. 2237-2247.

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Platz, G.J. and Lance, R.C.M. (2003) Resistance in cultivated barleys to Pyrenophora teres f. teres and prospects of its utilisation in marker identification and breeding. Australian Journal of Agricultural Research, 54 (12). pp. 1379-1386.

Jones, M.ORCID: 0000-0001-5002-0227 (2003) The State WA Agricultural Biotechnology Centre (SABC) - The engine that drives agricultural biotechnology in Western Australia. Australasian Biotechnology, 13 (2). pp. 40-41.

Li, C., Tarr, A., Lance, R., Harasymow, S., Cakir, M. and Appels, R. (2003) Toward isolating gene controlling seed dormancy and preharvest sprouting in barley. In: XIX International Congress of Genetics, 6 - 11 July, Melbourne, Australia

Li, C., Tarr, A., Lance, R., Harasymow, S., Paynter, B., Fox, G., Cakir, M., Broughton, S., Grime, C., Appels, R., Collins, H. and Read, B. (2003) Search for the major QTLs controlling barley grain physical quality. In: 11th Australian Barley Technical Symposium, 7 - 10 September 2003, Glenelg, South Australia

Li, C.D., Lance, R.C.M., Collins, H.M., Tarr, A., Roumeliotis, S., Harasymow, S., Cakir, M., Fox, G.P., Grime, C.R., Broughton, S., Young, K.J., Raman, H., Barr, A.R., Moody, D.B. and Read, B.J. (2003) Quantitative trait loci controlling kernel discoloration in barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1251-1259.

Li, C.D., Tarr, A., Lance, R.C.M., Harasymow, S., Uhlmann, J., Westcot, S., Young, K.J., Grime, C.R., Cakir, M., Broughton, S. and Appels, R. (2003) A major QTL controlling seed dormancy and pre-harvest sprouting/grain α-amylase in two-rowed barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1303-1313.

Macnish, M., Ryan, U.ORCID: 0000-0003-2710-9324, Behnke, J.M. and Thompson, R.C.A. (2003) Detection of the rodent tapeworm Rodentolepis (=Hymenolepis) microstoma in humans. A new zoonosis? International Journal for Parasitology, 33 (10). pp. 1079-1085.

Paris, M., Potter, R.H., Lance, R.C.M., Li, C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2003) Typing Mlo alleles for powdery mildew resistance in barley by single nucleotide polymorphism analysis using MALDI-ToF mass spectrometry. Australian Journal of Agricultural Research, 54 (12). pp. 1343-1349.

Park, R.F., Poulsen, D., Barr, A.R., Cakir, M., Moody, D.B., Raman, H. and Read, B.J. (2003) Mapping genes for resistance to Puccinia hordei in barley. Australian Journal of Agricultural Research, 54 (12). pp. 1323-1333.

Raman, H., Zhang, K., Setters, T., Moroni, L.K.S., Appels, R., Cakir, M., Raman, R., Delhaize, M., Ryan, P., Martin, P., Milgate, A., Mackay, M. and Matsumato, H. (2003) Molecular mapping and mechanism of aluminium tolerance in five DH populations of bread wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Wang, Z. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2003) cDNA generation on paramagnetic beads. In: Generation of cDNA Libraries: Methods in Molecular Biology. Humana Press, Totowa, NJ, pp. 25-31.

Wang, Z., Potter, R.H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2003) Differential display analysis of gene expression in the cytoplasm of giant cells induced in tomato roots by Meloidogyne javanica. Molecular Plant Pathology, 4 (5). pp. 361-371.

Williams, K.J., Platz, G., Barr, A., Cheong, J., Willsmore, K., Cakir, M. and Wallwork, H. (2003) Mapping genes for resistance to the spot form of net blotch. In: 11th Australian Barley Technical Symposium, 7 - 10 September 2003, Glenelg, South Australia

Williams, K.J., Platz, G.J., Barr, A.R., Cheong, J., Willsmore, K., Cakir, M. and Wallwork, H. (2003) A comparison of the genetics of seedling and adult plant resistance to the spot form of net blotch (Pyrenophora teres f. maculata). Australian Journal of Agricultural Research, 54 (12). pp. 1387-1394.

Wise, C.A., Paris, M., Morar, B., Wang, W., Kalaydjieva, L. and Bittles, A.H. (2003) A standard protocol for single nucleotide primer extension in the human genome using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 17 (11). pp. 1195-1202.

2002

Carter, M., Wilson, R.B., Barclay, I., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Paris, M. (2002) Application of high-throughput technologies for marker-assisted selection in wheat. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Dwyer, G., Loo, H., Khan, T., Siddique, K., Bellgard, M. and Jones, M.ORCID: 0000-0001-5002-0227 (2002) Molecular studies of ascochyta blight disease in chickpea. In: Crop Updates 2002: Pulse Research and Industry Development in Western Australia, 20 - 21 February 2002, Sheraton Hotel, Perth

Fosu-Nyarko, J., Jones, R.A.C., Smith, L., Jones, M.ORCID: 0000-0001-5002-0227 and Dwyer, G. (2002) Responses of alternative annual pasture and forage legumes to challenge with infectious subterranean clover mottle virus. Crop updates 2002 - Farming systems .

Fosu-Nyarko, J., Jones, R.A.C., Smith, L.J., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Dwyer, G.I. (2002) Host range and symptomatology of Subterranean clover mottle virus in alternative pasture, forage and crop legumes. Australasian Plant Pathology, 31 (4). pp. 345-350.

Fosu-Nyarko, J., Jones, R.G., Smith, L.S., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Dwyer, G. (2002) Testing for disease vulnerability in alternative pasture and forage legumes being assessed in plant improvement programmes. In: Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference, 15 - 20 September, Perth, Western Australia.

François, I.E.J.A., Dwyer, G.I., De Bolle, M.F.C., Goderis, I.J.W.M., Van Hemelrijck, W., Proost, P., Wouters, P., Broekaert, W.F. and Cammue, B.P.A. (2002) Processing in transgenic Arabidopsis thaliana plants of polyproteins with linker peptide variants derived from the Impatiens balsamina antimicrobial polyprotein precursor. Plant Physiology and Biochemistry, 40 (10). pp. 871-879.

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Cakir, M., Platz, G., Li, C., Lance, R., Jones, M.ORCID: 0000-0001-5002-0227 and Appels, R. (2002) Genetic and molecular studies of seedling and adult plant resistance in barley against Pyrenophora teres f. teres. In: 2nd International Barley Leaf Blight Workshop, 7 - 11 April, ICARDA, Aleppo, Syria

Heitman, T.L., Frederick, L.M., Viste, J.R., Guselle, N.J., Morgan, U.M.ORCID: 0000-0003-2710-9324, Thompson, R.C.A. and Olson, M.E. (2002) Prevalence of Giardia and Cryptosporidium and characterization of Cryptosporidium spp. isolated from wildlife, human, and agricultural sources in the North Saskatchewan River Basin in Alberta, Canada. Canadian Journal of Microbiology, 48 (6). pp. 530-541.

Jones, M.ORCID: 0000-0001-5002-0227, Gupta, S.ORCID: 0000-0002-4948-4689, Platz, G., Ablett, G.R., Loughman, R.B., Poulsen, D.V., Li, C.E., Lance, R.G., Galway, N.C., Appels, R. and Cakir, M. (2002) Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Zawko, G. and Selladurai, S. (2002) Rapid identification of wheat and barley varieities based on protein profiling by MALDI-TOF mass spectroscopy. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Li, D.A., Buirchell, B., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) Towards the identification of molecular markers linked to and the isolation of a novel resistance gene to cucumber mosaic virus in Lupinus luteus. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Paris, M. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) Microsatellite genotyping by primer extension and MALDI-ToF mass spectrometry. Plant Molecular Biology Reporter, 20 (3). pp. 259-263.

Paris, M. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) The development of 'perfect' molecular markers for plant breeding. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Paris, M., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Eglinton, J.K. (2002) Genotyping single nucleotide polymorphisms for selection of barley β-amylase alleles. Plant Molecular Biology Reporter, 20 (2). pp. 149-159.

Ratanasanobon, K., Wylie, S.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) Investigation of biolistics as an alternative transformation method for Narrow-leafed lupin (Lupinus angustifolius). In: 2002 Congress on In Vitro Biology, 25 - 29 June 2002, Orlando, FL

Scobie, M., Brien, S.R., Potter, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) Molecular mapping and markers in sweet narrow-leafed lupins (L. angustifolius). In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Wang, Z., Hollams, A.G., Humphris, S.M. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2002) Molecular studies on gene expression in host plants infected with the root-knot nematode Meloidoygne javanica. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Wylie, S.J.ORCID: 0000-0002-5639-7460, Kueh, J., Welsh, B., Smith, L.J., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (2002) A non-aphid-transmissible isolate of bean yellow mosaic potyvirus has an altered NAG motif in its coat protein. Archives of Virology, 147 (9). pp. 1813-1820.

Xiao, L., Sulaiman, I., Ryan, U.M.ORCID: 0000-0003-2710-9324, Zhou, L., Atwill, E.R., Tischler, M.L., Zhang, X., Fayer, R. and Lal, A.A. (2002) Host adaptation and host-parasite co-evolution in Cryptosporidium: Implications for taxonomy and public health. International Journal for Parasitology, 32 (14). pp. 1773-1785.

2001

Bassami, M.R., Ypelaar, I., Berryman, D., Wilcox, G.E. and Raidal, S.R. (2001) Genetic diversity of beak and feather disease virus detected in psittacine species in Australia. Virology, 279 (2). pp. 392-400.

Ehsanpour, A.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2001) Plant regeneration from mesophyll protoplasts of potato (Solanum Tuberosum L.) cultivar delaware using silver thiosulfate (STS). Journal of Sciences of the Islamic Republic of Iran, 12 (2). pp. 103-110.

Glaberman, S., Sulaiman, I., Bern, C., Levior, J., Peng, M.M., Morgan-Ryan, U.M.ORCID: 0000-0003-2710-9324, Gilman, R., Lal, A.A. and Xiao, L. (2001) A Multilocus Genotypic Analysis of Cryptosporidium meleagridis. The Journal of Eukaryotic Microbiology, 48 (s1). 19s-22s.

Gupta, S.ORCID: 0000-0002-4948-4689 and Loughman, R. (2001) Current virulence of Pyrenophora teres on barley in Western Australia. Plant Disease, 85 (9). pp. 960-966.

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Platz, G. and Lance, R. (2001) Journey of net blotch: from pathotype diversity to useful resistance in barley. In: 10th Australian Barley Technical Symposium, 16 - 20 September, Canberra, Australia

Jones, R.A.C., Fosu-Nyarko, J., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Dwyer, G.I. (2001) Subterranean clover mottle virus. In: Jones, A.T. and Robinson, D.J., (eds.) Descriptions of Plant Viruses No. 387. Scottish Crop Research Institute.

McLauchlan, A., Ogbonnaya, F.C., Hollingsworth, B., Carter, M., Gale, K.R., Henry, R.J., Holton, T.A., Morell, M.K., Rampling, L.R., Sharp, P.J., Shariflou, M.R., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Appels, R. (2001) Development of robust PCR-based DNA markers for each homoeo-allele of granule-bound starch synthase and their application in wheat breeding programs. Australian Journal of Agricultural Research, 52 (12). pp. 1409-1416.

Menon, B.S., Shukri Abdullah, M.D., Mahamud, F., Morgan, U.M.ORCID: 0000-0003-2710-9324, Malik, A.S., Choo, K.E. and Singh, B. (2001) Low prevalence of Cryptosporidium parvum in hospitalized children in Kota Bharu, Malaysia. Southeast Asian Journal of Tropical Medicine and Public Health, 32 (2). pp. 319-322.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Monis, P.T., Xiao, L., Limor, J., Sulaiman, I., Raidal, S., O'Donoghue, P., Gasser, R.B., Murray, A., Fayer, R., Blagburn, B.L., Lal, A.A. and Thompson, R.C.A. (2001) Molecular and phylogenetic characterisation of Cryptosporidium from birds. International Journal for Parasitology, 31 (3). pp. 289-296.

Murphy, N.E.A., Loughman, R., Wilson, R.E., Lagudah, E.S., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2001) A single gene controls resistance to septoria nodorum blotch in the Aegilops tauschii accession AUS21712. Australian Journal of Agricultural Research, 52 (12). pp. 1403-1407.

Paris, M. (2001) Vapornomics. Nature Biotechnology, 19 (4). p. 301.

Schibeci, D., Potter, R., Wathen-Dunn, K., Jones, M.ORCID: 0000-0001-5002-0227 and Bellgard, M. (2001) Applying artificial neural networks to the classification of wheat varieties processed via MALDI-TOF mass spectrometry. In: Mastorakis, N.E., (ed.) Advances in Neural Networks and Applications. World Scientific and Engineering Society Press, pp. 262-267.

Sharp, P.J., Johnston, S., Brown, G., McIntosh, R.A., Pallotta, M., Carter, M., Bariana, H.S., Khatkar, S., Lagudah, E.S., Singh, R.P., Khairallah, M., Potter, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2001) Validation of molecular markers for wheat breeding. Australian Journal of Agricultural Research, 52 (12). pp. 1357-1366.

Zhang, W., Carter, M., Matsay, S., Stoutjesdijk, P., Potter, R., Jones, M.G.K.ORCID: 0000-0001-5002-0227, Kleven, S., Wilson, R.E., Larkin, P.J., Turner, M. and Gale, K.R. (2001) Implementation of probes for tracing chromosome segments conferring barley yellow dwarf virus resistance. Australian Journal of Agricultural Research, 52 (11-12). pp. 1389-1392.

Zhaohui, W.N., Potter, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2001) A novel approach to extract and analyse cytoplasmic contents from individual giant cells induced in tomato roots by the root-knot nematode Meloidogyne javanica. International Journal of Nematology, 11 (2). pp. 219-225.

2000

Blinco, J., Potter, R.H. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) Use of a GAL4-GFP enhancer trap to monitor gene expression in Arabidopsis roots infected with Meloidogyne javanica. Journal of Nematology, 32 (4). pp. 419-420.

Brien, S.J., Cowling, W.A., Potter, R.H., O'Brien, P.A., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) A molecular marker for early maturity (Ku) and marker-assisted breeding of Lupinus angustifolius. In: Lupin, an ancient crop for the new millennium: Proceedings of the 9th International Lupin Conference, 20 - 24 June 1999, Klink/Muritz, Germany pp. 115-117.

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Platz, G., Lance, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) Genetics of net-type net blotch (Pyrenophora teres f. sp. teres) resistance in barley against Australian pathotypes. In: Barley genetics VIII : proceedings of the 8th International Barley Genetics Symposium, 22 - 27 October, Adelaide, South Australia

Jones, M.G.K.ORCID: 0000-0001-5002-0227, Wylie, S.J.ORCID: 0000-0002-5639-7460, Berryman, D., Selladurai, S., Brien, S.J., Li, D., Yang, R.ORCID: 0000-0003-2563-2015, Ryan, K., Li, H. and Li, L. (2000) Biotechnological tools in lupin breeding and disease diagnosis. In: Lupin, an ancient crop for the new millennium: Proceedings of the 9th International Lupin Conference, 20 - 24 June 1999, Klink/Muritz, Germany pp. 111-114.

Li, H., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) Transgenic yellow lupin (Lupinus luteus). Plant Cell Reports, 19 (6). pp. 634-637.

Morgan, U.M.ORCID: 0000-0003-2710-9324 (2000) Detection and characterisation of parasites causing emerging zoonoses (Review). International Journal for Parasitology, 30 (12-13). pp. 1407-1421.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Xiao, L., Hill, B.D., O'Donoghue, P., Limor, J., Lal, A.A. and Thompson, R.C.A. (2000) Detection of the Cryptosporidium parvum “Human” Genotype in a Dugong (Dugong Dugon). Journal of Parasitology, 86 (6). pp. 1352-1354.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Xiao, L., Limor, J., Gelis, S., Raidal, S.R., Fayer, R., Lal, A.A., Elliot, A. and Thompson, R.C.A. (2000) Cryptosporidium meleagridisin an Indian ring-necked parrot (Psittacula krameri). Australian Veterinary Journal, 78 (3). pp. 182-183.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Xiao, L., Monis, P., Fall, A., Irwin, P.J.ORCID: 0000-0002-0006-8262, Fayer, R., Denholm, K.M., Limor, J., Lal, A.A. and Thompson, R.C.A. (2000) Cryptosporidium spp. in domestic dogs: the "dog" genotype. Applied and Environmental Microbiology, 66 (5). pp. 2220-2223.

Murphy, N.E.A., Loughman, R., Wilson, R., Lagudah, E.S., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) Resistance to septoria nodorum blotch in the Aegilops tauschii accession RL5271 is controlled by a single gene. Euphytica, 113 (3). pp. 227-231.

Paris, M. and Carter, M. (2000) Cereal DNA: A rapid high-throughput extraction method for marker assisted selection. Plant Molecular Biology Reporter, 18 (4). pp. 357-360.

Saqib, M., Jones, J.B.ORCID: 0000-0002-0773-2007, Cayford, B. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (2000) First report of Bean common mosaic potyvirus in Western Australia. New Disease Reports, 10 . p. 43.

Sulaiman, I., Morgan, U.M.ORCID: 0000-0003-2710-9324, Thompson, R.C.A., Lal, A.A. and Xiao, L. (2000) Phylogenetic relationships of Cryptosporidium parasites based on the 70- kilodalton heat shock protein (HSP70) gene. Applied and Environmental Microbiology, 66 (6). pp. 2385-2391.

Xiao, L., Limor, J., Morgan, U.M.ORCID: 0000-0003-2710-9324, Sulaiman, I., Thompson, R.C.A. and Lal, A.A. (2000) Sequence differences in the diagnostic target region of the oocyst wall protein gene of Cryptosporidium parasites. Applied and Environmental Microbiology, 66 (12). pp. 5499-5502.

Xiao, L., Morgan, U.M.ORCID: 0000-0003-2710-9324, Fayer, R., Thompson, R.C.A. and Lal, A.A. (2000) Cryptosporidium systematics and implications for public health (Review). Parasitology Today, 16 (7). pp. 287-292.

Yang, RongchangORCID: 0000-0003-2563-2015 (2000) Towards genetic engineering cucumber mosaic virus (CMV) resistance in lupins. PhD thesis, Murdoch University.

1999

Gupta, S.ORCID: 0000-0002-4948-4689, Loughman, R., Lance, R. and Jones, M.ORCID: 0000-0001-5002-0227 (1999) Resistance to Pyrenophora teres in barley. In: 9th Australian Barley Technical Symposium, 12 - 16 September, Melbourne, Australia

Hutangura, P., Mathesius, U., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Rolfe, B.G. (1999) Auxin induction is a trigger for root gall formation caused by root-knot nematodes in white clover and is associated with the activation of the flavonoid pathway. Australian Journal of Plant Physiology, 26 (3). pp. 221-231.

Hutangura, Pokkwan (1999) Development and use of in vitro culture of plant parasitic nematodes to study host feeding cell formation and function. PhD thesis, Murdoch University.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) CMV resistance in transgenic narrow-leafed lupin with the CMV replicase gene. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Characterisation of genes differentially expressed in nematode feeding cells. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Cloning and expression of the NIA protease from BYMV. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Development and implementation of PCR-based markers in Western Australia's barley breeding program. In: 9th Australian Barley Technical Symposium, 12 - 16 September 1999, Melbourne, Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Gene mapping and marker-assisted breeding of Lupinus angustifolius. In: 9th International Lupin Conference, 20 - 24 June 1999, Klink/Muritz, Germany.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Genomic characterisation of subterranean clover mottle virus. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Investigating the granule-bound starch sythase genes of wheat. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Molecular analysis of the coat proteins of necrotic and non-nectrotic strains of bean yellow mosaic potyvirus in narrow-leafed lupin (Lupinus angustifolius). In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Molecular marker for resistance to Stagonospora nodorum in Triticum Tauschii. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Preliminary assessments for resistance to bean yellow mosaic virus replicase gene in transgenic lupins. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Protection conferred by the cucumber mosaic virus replicase gene in transgenic narrow-leafed lupin. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Quantative reverse transcription - PCR assay of the RNA component of cucumber mosaic virus using the Taqman fluorogenic detection system. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Rabbit population control using a plant vaccine. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Single giant cell RT-PCR and differential display RT-PCR. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Towards identification and isolation of an endogenous resistance gene to cucumber mosaic virus in lupinus luteus. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Use of differential display to identify changes in gene expression during root-knot nematode infection. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) The coat protein of lupin necrotic and non-nectrotic strains of bean yellow mosaic virus. In: 11th International Congress of Virology, 9 - 13 August 1999, Sydney, Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) The complete nucleotide sequences of cucumber mosaic virus LY isolate. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) A molecular construct to study the expression pattern of a wound-inducible promoter during insect attack. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) A protease gene of bean yellow mosaic virus confers virus resistance in lupin. In: XIth International Congress of Virology, 9 - 13 August 1999, Sydney, Australia.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Buddle, J.R., Armson, A., Elliot, A. and Thompson, R.C.A. (1999) Molecular and biological characterisation of Cryptosporidium in pigs. Australian Veterinary Journal, 77 (1). pp. 44-47.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Deplazes, P., Forbes, D.A., Spano, F., Hertzberg, H., Sargent, K., Elliot, A. and Thompson, R.C.A. (1999) Sequence and PCR-RFLP analysis of the internal transcribed spacers of the rDNA repeat unit in isolates of Cryptosporidium from different hosts. Parasitology, 118 (1). pp. 49-58.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Sturdee, A.P., Singleton, G., Gomez, M.S., Gracenea, M., Torres, J., Hamilton, S.G., Woodside, D.P. and Thompson, R.C.A. (1999) The Cryptosporidium "mouse" genotype is conserved across geographic areas. Journal of Clinical Microbiology, 37 (5). pp. 1302-1305.

Morgan, U.M.ORCID: 0000-0003-2710-9324 and Thompson, R.C.A. (1999) The importance of genotyping isolates before assigning species (letter). Parasitology Today, 15 (2). pp. 80-81.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Xiao, L., Fayer, R., Graczyk, T.K., Lal, A.A., Deplazes, P. and Thompson, R.C.A. (1999) Phylogenetic analysis of Cryptosporidium isolates from captive reptiles using 18S rDNA sequence data and random amplified polymorphic DNA analys. Journal of Parasitology, 85 (3). pp. 525-530.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Xiao, L., Fayer, R., Lal, A.A. and Thompson, R.C.A. (1999) Variation in Cryptosporidium: towards a taxonomic revision of the genus (Review). International Journal for Parasitology, 29 (11). pp. 1733-1751.

Murphy, N., Loughman, R., Wilson, R., Lagudah, E., Appels, R. and Jones, M.ORCID: 0000-0001-5002-0227 (1999) Inheritance of Septoria nodorum blotch resistance in a Triticum tauschii accession controlled by a single gene. In: 5th International Workshop on Septoria and stagonospora diseases of cereals: A compilation of global research, 20 - 24 September 1999, Mexico.

Murphy, N.E.A., Loughman, R., Lagudah, E.S., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Genetic variability in a collection of Stagonospora nodorum isolates from Western Australia. In: 5th International Septoria Workshop, 20 - 24 September 1999, CIMMYT, Mexico

Murphy, N.E.A., Loughman, R., Wilson, R., Lagudah, E.S., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Identification of a molecular marker linked to Septoria nodorum blotch resistance in Triticum tauschii using F2 bulked segregant. In: 5th International Workshop on Septoria and stagonospora diseases of cereals: A compilation of global research, 20 - 24 September 1999, Mexico

Wareing, S., Hartaningsih, N., Wilcox, G.E. and Penhale, W.J. (1999) Evidence for immunosuppression associated with Jembrana disease virus infection of cattle. Veterinary Microbiology, 68 (1-2). pp. 179-185.

Xiao, L., Morgan, U.M.ORCID: 0000-0003-2710-9324, Limor, J., Escalante, A., Arrowood, M.J., Shulaw, W., Thompson, R.C.A., Fayer, R. and Lal, A.A. (1999) Genetic diversity within Cryptosporidium parvum and related Cryptosporidium species. Applied and Environmental Microbiology, 65 (8). pp. 3386-3391.

Yang, R.ORCID: 0000-0003-2563-2015, Dwyer, L., Liu, G.I., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1999) Engineering cucumber mosaic virus resistance in narrow-leafed lupins (Lupinus angustifolius) based on a defective replicase gene. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

1998

Bartlem, D., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Heinrich, T. (1998) Molecular aspects of plant-nematode interactions and their exploitation for resistance strategies. Australasian Plant Pathology, 27 (2). pp. 59-72.

Briney, A., Wilson, R., Potter, R.H., Barclay, I., Crosbie, G., Appels, R. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) A PCR-based marker for selection of starch and potential noodle quality in wheat. Molecular Breeding, 4 (5). pp. 427-433.

Dwyer, Geoffrey Ian (1998) Studies on cloned antibody genes for virus resistance in plants. PhD thesis, Murdoch University.

Gregg, K., Hamdorf, B., Henderson, K., Kopecny, J. and Wong, C.M. (1998) Genetically modified ruminal bacteria protect sheep from fluoroacetate poisoning. Applied and Environmental Microbiology, 64 (9). pp. 3496-3498.

Hutangura, P., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Heinrich, T. (1998) Optimisation of culture conditions for in vitro infection of tomato with the root-knot nematode Meloidogyne javanica. Australasian Plant Pathology, 27 (2). pp. 84-89.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) Gene expression in root-knot nematode infected plant roots. In: ComBio 1998, 21 August 1998, Scarborough, Western Australia.

Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) Gene mapping and marker-assisted breeding of lupinus angustifolius. In: ComBio 1998, 21 August 1998, Scarborough, Western Australia.

Li, H., Hoffman, K., Wylie, S.ORCID: 0000-0002-5639-7460, Ryan, K., Liu, L. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) Development of an in vitro transformation system for Lupinus luteus. In Vitro Cellular & Developmental Biology - Animal, 34 (3). 53A.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Forbes, D.A. and Thompson, R.C.A. (1998) Molecular epidemiology of Cryptosporidium parvum infection. European Journal of Protistology, 34 (3). pp. 262-266.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Pallant, L., Dwyer, B.W., Forbes, D.A., Richomme, G. and Thompson, R.C.A. (1998) Comparison of PCR and microscopy for detection of Cryptosporidium parvum in human fecal specimens: clinical trial. Journal of Clinical Microbiology, 36 (4). pp. 995-998.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Sargent, K., Deplazes, P., Forbes, D.A., Spano, F., Hertzberg, H., Elliot, A. and Thompson, R.C.A. (1998) Molecular characterization of Cryptosporidium from various hosts. Parasitology, 117 (1). pp. 31-37.

Morgan, U.M.ORCID: 0000-0003-2710-9324, Sargent, K., Elliot, A. and Thompson, R.C.A. (1998) Cryptosporidium in cats - Additional evidence for C. felis. The Veterinary Journal, 156 (2). pp. 159-161.

Morgan, U.M.ORCID: 0000-0003-2710-9324 and Thompson, R.C.A. (1998) PCR Detection of Cryptosporidium: The Way Forward? (Review). Parasitology Today, 14 (6). pp. 241-245.

Morgan, U.M.ORCID: 0000-0003-2710-9324 and Thompson, R.C.A. (1998) PCR detection of Cryptosporidium - Addendum ( Letter ). Parasitology Today, 14 (11). pp. 469-470.

Rugkhla, A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) Somatic embryogenesis and plantlet formation in Santalum album and S. spicatum. Journal of Experimental Botany, 49 (320). pp. 563-571.

Sargent, K., Morgan, U.M.ORCID: 0000-0003-2710-9324, Elliot, A. and Thompson, R.C.A. (1998) Morphological and genetic characterisation of Cryptosporidium oocysts from domestic cats. Veterinary Parasitology, 77 (4). pp. 221-227.

Singh, Z., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Jones, R.A.C. (1998) Effectiveness of coat protein and defective replicase gene-mediated resistance against Australian isolates of cucumber mosaic virus. Australian Journal of Experimental Agriculture, 38 (4). pp. 375-383.

Thompson, R.C.A., Constantine, C.C. and Morgan, U.M.ORCID: 0000-0003-2710-9324 (1998) Overview and significance of molecular methods: what role for molecular epidemiology? (Review). Parasitology, 117 (Suppl). S161-S175.

Wylie, S.ORCID: 0000-0002-5639-7460, Li, H., Hoffmann, K., Ryan, K., Yang, R.ORCID: 0000-0003-2563-2015, Li, D., Liu, L., Buirchell, B., Jones, R.A.C. and Jones, M.ORCID: 0000-0001-5002-0227 (1998) Genetically engineered virus disease resistance in lupins. In: Crop Updates 1998: Lupins, 18 - 20 February 1998, Rendezvous Observation City Hotel, Scarborough, Perth

Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) The Western Australian State Agricultural Biotechnology Centre: A role in technology transfer to developing countries. In Vitro Cellular & Development Biology - Animal, 34 (3). 18A.

Yang, R.ORCID: 0000-0003-2563-2015, Dwyer, G.I., Wylie, S.J.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1998) Development of CMV coat protein, movement protein and replicase resistance constructs for the Australian grain industry. In: 7th International Congress of Plant Pathology, 9 - 16 August, Edinburgh.

1997

Carnegie, P.R. (1997) Phage display of antigens. Australian Journal of Medical Science, 4 . pp. 131-132.

Davies, J.M., Robinson, W.F. and Carnegie, P.R. (1997) Antibody reactivity to the transmembrane protein of the caprine arthritis encephalitis virus correlates with severity of arthritis: no evidence for the involvement of epitope mimicry. Veterinary Immunology and Immunopathology, 60 (1-2). pp. 131-147.

Heinrich, T., Washer, S., Marshall, J., Jones, M.G.K.ORCID: 0000-0001-5002-0227 and Potter, R.H. (1997) Subtractive hybridization of cDNA from small amounts of plant tissue. Molecular Biotechnology, 8 (1). pp. 7-12.

Mine, O.M. and Carnegie, P.R. (1997) Use of degenerate primers and heat-soaked polymerase chain reaction (PCR) to clone a serine protease antigen from Dermatophilus congolensis. Immunology and Cell Biology, 75 (5). pp. 484-491.

Njeru, R., Ferris, D.G., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1997) Studies on seed transmission of subterranean clover mottle virus and its detection in clover seed by ELISA and RT-PCR. Australian Journal of Agricultural Research, 48 (3). pp. 343-350.

Panutat, P., Loh, J., Berryman, D. and Jones, M.ORCID: 0000-0001-5002-0227 (1997) Expression and purification of the NIa protease of bean yellow mosaic virus. In: 11th Biennial Conference of the Australasian Plant Pathology Society, 29 September - 2 October 1997, Perth, Western Australia

Panutat, P., Loh, J., Berryman, D. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1997) Characterisation of the NIA gene from BYMV. In: 8th Annual Combined Biological Sciences Meeting, 15 August 1997, Perth, Western Australia.

Sargent, Keith (1997) Molecular characterization of Cryptosporidium from selected hosts. Honours thesis, Murdoch University.

1996

Ehsanpour, A.A. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1996) Glucuronidase expression in transgenic tobacco roots with a Parasponia promoter on infection with Meloidogyne javanica. Journal of Nematology, 28 (4). pp. 407-413.

Mathews, A., Llewellyn, D.J., Wu, Y. and Dennis, E.S. (1996) Isolation and characterisation of full-length cDNA clones of the giant taro (Alocasia macrorrhiza) trypsin/chymotrypsin inhibitor. Plant Molecular Biology Reporter, 30 (5). pp. 1035-1039.

Morgan, U.M.ORCID: 0000-0003-2710-9324, O'Brien, P.A. and Thompson, R.C.A. (1996) The development of diagnostic PCR primers for Cryptosporidium using RAPD-PCR. Molecular and Biochemical Parasitology, 77 (1). pp. 103-108.

1995

Ehsanpour, Ali Akbar (1995) Cell biological manipulations for transfer of the Mi root-knot nematode resistance gene from tomato to potato. PhD thesis, Murdoch University.

Mathews, A., Dwyer, G., Wylie, S.ORCID: 0000-0002-5639-7460 and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1995) Nucleotide and deduced amino acid sequence of the 3' end of the BYMV-MI genome. Archives of Virology, 140 (12). pp. 2269-2272.

Singh, Z., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1995) Identification of cucumber mosaic virus subgroup I isolates from banana plants affected by infectious chlorosis disease using RT-PCR. Plant Disease, 79 (7). pp. 713-716.

1993

Wylie, S.ORCID: 0000-0002-5639-7460, Wilson, C.R., Jones, R.A.C. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1993) A polymerase chain reaction assay for cucumber mosaic virus in lupin seeds. Australian Journal of Agricultural Research, 44 (1). pp. 41-51.

1992

Wenpin, C., Wu, Q-S, Liu, D. and Jones, M.G.K.ORCID: 0000-0001-5002-0227 (1992) Preliminary studies on optimizing protoplast culture of ryegrasses. Journal of Nanjing Agricultural University, 15 (2). pp. 10-15.

This list was generated on Sun May 22 22:42:55 2022 UTC.