Publications: Institute for Immunology and Infectious Diseases

2022

Almaazmi, S.Y., Singh, H., Dutta, T. and Blatch, G.L. (2022) Exported J domain proteins of the human malaria parasite. Frontiers in Molecular Biosciences, 9 . Art. 978663.

Bruusgaard-Mouritsen, M.A., Koo, G., Heinrichsen, A.S., Melchiors, B.B., Krantz, M.S., Plager, J.H., Boxer, M., Phillips, E.J., Stone, C.A. and Garvey, L.H. (2022) Janssen COVID-19 vaccine tolerated in 10 patients with confirmed polyethylene glycol allergy. The Journal of Allergy and Clinical Immunology: In Practice, 10 (3). P859-862.

Cheng, X., Zhou, L., Li, Z., Shen, S., Zhao, Y., Liu, C., Zhong, X., Chang, Y., Kermode, A.G. and Qiu, W. (2022) Gut microbiome and bile acid metabolism induced the activation of CXCR5+ CD4+ T Follicular Helper Cells to participate in Neuromyelitis Optica Spectrum Disorder recurrence. Frontiers in Immunology, 13 . Art. 827865.

Collins, K., Rueter, K., Lucas, M., Sommerfield, D., Sommerfield, A., Khan, N. and Ungern‐Sternberg, B.S. (2022) Penicillin allergy SHACK : Survey of hospital and community knowledge. Journal of Paediatrics and Child Health, 58 (8). pp. 1414-1419.

Copaescu, A-M, James, F., Vogrin, S., Rose, M., Chua, K., Holmes, N.E., Turner, N.A., Stone, C., Phillips, E. and Trubiano, J. (2022) Use of a penicillin allergy clinical decision rule to enable direct oral penicillin provocation: an international multicentre randomised control trial in an adult population (PALACE): study protocol. BMJ Open, 12 (8). Art. e063784.

Copaescu, A.M., Rosa Duque, J.S. and Phillips, E.J. (2022) What have we learned about the allergenicity and adverse reactions associated with the severe acute respiratory syndrome coronavirus 2 vaccine. Annals of Allergy, Asthma & Immunology, 129 (1). P40-51.

Corey, K.B., Koo, G. and Phillips, E.J. (2022) Adverse Events and Safety of SARS-Cov2 Vaccines: What’s New and What’s Next. The Journal of Allergy and Clinical Immunology: In Practice .

Corey, K.B., Koo, G., Stone, C.A., Kroop, S.F., Fissell, W.H., Kozlowski, S., Zhou, Z-H and Phillips, E.J. (2022) A case of coronavirus disease 2019 messenger RNA vaccine tolerance and immune response despite presence of anti-polyethylene glycol antibodies. Annals of Allergy, Asthma & Immunology . In Press.

Deshpande, P., Li, Y., Thorne, M., Palubinsky, A.M., Phillips, E.J. and Gibson, A. (2022) Practical Implementation of Genetics: New Concepts in Immunogenomics to Predict, Prevent, and Diagnose Drug Hypersensitivity. The Journal of Allergy and Clinical Immunology: In Practice .

Dutta, T., Singh, H., Edkins, A.L. and Blatch, G.L. (2022) Hsp90 and associated co-chaperones of the Malaria parasite. Biomolecules, 12 (8). Art. 1018.

Fazal, Z.Z., Sen, P., Joshi, M., Ravichandran, N., Lilleker, J.B., Agarwal, V., Kardes, S., Kim, M., Day, J., Makol, A., Milchert, M., Gheita, T., Salim, B., Velikova, T., Gracia-Ramos, A.E., Parodis, I., Nikiphorou, E., Tan, A.L., Chatterjee, T., Cavagna, L., Saavedra, M.A., Shinjo, S.K., Ziade, N., Selva-O’Callaghan, A., Nune, A., Knitza, J., Kuwana, M., Gutiérrez, C-E.T., Caballero-Uribe, C.V., Dey, D., Distler, O., Chinoy, H., Agarwal, V., Aggarwal, R., Gupta, L., Barman, B., Singh, Y.P., Ranjan, R., Jain, A., Pandya, S.C., Pilania, R.K., Sharma, A., Manoj, M.M., Gupta, V., Kavadichanda, C.G., Patro, Pr.S., Ajmani, S., Phatak, S., Goswami, R.P., Chowdhury, A.C., Mathew, A.J., Shenoy, P., Asranna, A., Bommakanti, K.T., Shukla, A., Pandey, A.K.R., Gaur, P.S., Mamadapur, M., Ghodke, A., Chandwar, K., Jagtap, K., Fazal, Z.Z., Cansu, D.Ü., Yıldırım, R., Patel, A., Pauling, J.D., Wincup, C., Giannini, M., Maurier, F., Campagne, J., Meyer, A., Del Papa, N., Sambataro, G., Fabiola, A., Govoni, M., Parisi, S., Bocci, E.B., Sebastiani, G.D., Fusaro, E., Sebastiani, M., Quartuccio, L., Franceschini, F., Sainaghi, P.P., Orsolini, G., De Angelis, R., Danielli, M.G., Venerito, V., Grignaschi, S., Giollo, A., Traboco, L.S., Shaharir, S.S., Wibowo, S.A.K., Tehozol, E.A.Z., Serrano, J.R., De La Torre, I.G., Colunga‑Pedraza, I.J., Merayo-Chalico, J., Loarce-Martos, J., Prieto-González, S., Gil-Vila, A., Aranega, R., Hoff, L.S., Nakashima, R., Sato, S., Kimura, N., Kaneko, Y., Tomaras, S., Proft, F.N., Holzer, M-T, Gromova, M.A., Aharonov, O., Nagy-Vincze, M., Griger, Z., Hmamouchi, I., El bouchti, P.I., Baba, Z., Ima-Edomwonyi, U., Dedeke, I., Airenakho, E., Madu, N.H., Yerima, A., Olaosebikan, H., Chibuzo, O.C., Becky, A., Koussougbo, O.D., Palalane, E., Langguth, D., Limaye, V., Needham, M., Srivastava, N., Hudson, M., Landon-Cardinal, O., Zuleta, W.G.R., Arbeláez, Á., Cajas, J., Silva, J.A.P., Fonseca, J.E., Zimba, O., Bohdana, D., So, H., Ugarte-Gil, M.F., Chinchay, L., Bernaola, J.P., Pimentel, V., Tanveer Hasan, A.T.M., Saha, S., Vaidya, B., Fathi, H.M., Mohammed, R.H.A., Chen, Y-M, Harifi, G., El Kibbi, L., Halabi, H.M., Akawatcharangura, P., Katchamart, W., Fuentes-Silva, Y., Cabriza, K., Losanto, J., Colaman, N., Cachafeiro-Vilar, A., Bautista, G.G., Ho, E.J.G., González, R.A., Nunez, L.S., Vergara, C.M., Báez, J.T., Alonzo, H., Pastelin, C.B.S., Salinas, R.G., Obiols, A.Q., Chávez, N., Ordóñez, A.B., Argueta, S., Quijivix, D., Llerena, G.A.R., Sierra-Zorita, R., Arrieta, D., Hidalgo, E.R., Saenz, R., M., I.E., Morales, R., Calapaqui, W., Quezada, I. and Arredondo, G. (2022) COVAD survey 2 long-term outcomes: unmet need and protocol. Rheumatology International .

Files, J.K., Sterrett, S., Henostroza, S., Fucile, C., Maroney, K., Fram, T., Mallal, S., Kalams, S., Carlson, J., Rosenberg, A., Erdmann, N., Bansal, A., Goepfert, P.A. and Silvestri, G. (2022) HLA-II-Associated HIV-1 Adaptation Decreases CD4 + T-Cell Responses in HIV-1 Vaccine Recipients. Journal of Virology, 96 (17).

Gibson, A., Li, Y., Thorne, M., Ram, R., Palubinsky, A., Choshi, P., Porter, M., Trubiano, J., Deshpande, P., Chopra, A., Leary, S., Gangula, R., White, K., Pilkington, M., Konvinse, K., Wang, C-W, Pan, R-Y, Hung, S-I, Chung, W-H, Peter, J., Mallal, S. and Phillips, E. (2022) Single-cell multi-omic approaches define common molecular and cellular signals of dominant antigen-driven cells at the site of drug-induced Stevens Johnson Syndrome and Toxic Epidermal Necrolysis (SJS/TEN) tissue damage. Journal of Allergy and Clinical Immunology, 149 (2). Art. AB181.

Goldman, J.L., Miller, J.O., Miller, N., Eveleigh, R., Gibson, A., Phillips, E.J. and Pastinen, T. (2022) HLA-B*07:02 and HLA-C*07:02 are associated with trimethoprim-sulfamethoxazole respiratory failure. The Pharmacogenomics Journal, 22 . pp. 124-129.

Guyer, A.C., Macy, E., White, A.A., Kuruvilla, M.E., Robison, R.G., Kumar, S., Khan, D.A., Phillips, E.J., Ramsey, A. and Blumenthal, K. (2022) Allergy Electronic Health Record Documentation: A 2022 Work Group Report of the AAAAI Adverse Reactions to Drugs, Biologicals, and Latex Committee. The Journal of Allergy and Clinical Immunology: In Practice . In Press.

Hama, N., Abe, R., Gibson, A. and Phillips, E.J. (2022) Drug-Induced Hypersensitivity Syndrome (DIHS)/ Drug Reaction With Eosinophilia and Systemic Symptoms (DRESS): Clinical Features and Pathogenesis. The Journal of Allergy and Clinical Immunology: In Practice, 10 (5). pp. 1155-1167.

Harris, A., Abdul-Rahman, A., Morgan, W., Khoo, Y.J., Lind, C., Kermode, A., Carroll, W. and Yu, D-Y (2022) Linear interactions between intraocular, intracranial pressure, and retinal vascular pulse amplitude in the fourier domain. PLoS ONE, 17 (6). Art. e0270557.

Hertzman, R.J., Deshpande, P., White, K.D., Gangula, R., Chopra, A., Ram, R., Zic, J.A., Zwerner, J.P., Gibson, A. and Phillips, E.J. (2022) Single-cell immunopathology of systemic contact allergy associated with corticosteroids. Journal of Dermatological Science, 105 (2). pp. 137-140.

Hop, P.J., Zwamborn, R.A.J., Hannon, E., Shireby, G.L., Nabais, M.F., Walker, E.M., van Rheenen, W., van Vugt, J.J.F.A., Dekker, A.M., Westeneng, H-J, Tazelaar, G.H.P., van Eijk, K.R., Moisse, M., Baird, D., Al Khleifat, A., Iacoangeli, A., Ticozzi, N., Ratti, A., Cooper-Knock, J., Morrison, K.E., Shaw, P.J., Basak, A.N., Chiò, A., Calvo, A., Moglia, C., Canosa, A., Brunetti, M., Grassano, M., Gotkine, M., Lerner, Y., Zabari, M., Vourc’h, P., Corcia, P., Couratier, P., Mora Pardina, J.S., Salas, T., Dion, P., Ross, J.P., Henderson, R.D., Mathers, S., McCombe, P.A., Needham, M., Nicholson, G., Rowe, D.B., Pamphlett, R., Mather, K.A., Sachdev, P.S., Furlong, S., Garton, F.C., Henders, A.K., Lin, T., Ngo, S.T., Steyn, F.J., Wallace, L., Williams, K.L., Neto, M.M., Cauchi, R.J., Blair, I.P., Kiernan, M.C., Drory, V., Povedano, M., de Carvalho, M., Pinto, S., Weber, M., Rouleau, G.A., Silani, V., Landers, J.E., Shaw, C.E., Andersen, P.M., McRae, A.F., van Es, M.A., Pasterkamp, R.J., Wray, N.R., McLaughlin, R.L., Hardiman, O., Kenna, K.P., Tsai, E., Runz, H., Al-Chalabi, A., van den Berg, L.H., Van Damme, P., Mill, J., Veldink, J.H., Heijmans, B.T., t Hoen, P.A.C., van Meurs, J., Jansen, R., Franke, L., Boomsma, D.I., Pool, R., van Dongen, J., Hottenga, J.J., van Greevenbroek, M.M.J., Stehouwer, C.D.A., van der Kallen, C.J.H., Schalkwijk, C.G., Wijmenga, C., Franke, L., Zhernakova, S., Tigchelaar, E.F., Slagboom, P.E., Beekman, M., Deelen, J., Van Heemst, D., Veldink, J.H., van den Berg, L.H., van Duijn, C.M., Hofman, B.A., Isaacs, A., Uitterlinden, A.G., van Meurs, J.B.C., Jhamai, P.M., Verbiest, M., Suchiman, H.E.D., Verkerk, M., van der Breggen, R., van Rooij, J., Lakenberg, N., Mei, H., van Iterson, M., van Galen, M., Bot, J., Zhernakova, D.V., Jansen, R., van ‘t Hof, P., Deelen, P., Nooren, I., t Hoen, P.A.C., Heijmans, B.T., Moed, M., Franke, L., Vermaat, M., Zhernakova, D.V., Luijk, R., Jan Bonder, M., van Iterson, M., Deelen, P., van Dijk, F., van Galen, M., Arindrarto, W., Kielbasa, S.M., Swertz, M.A., van Zwet, E.W., Jansen, R., Hoen, P.A.C., Heijmans, B.T., Al-Chalabi, A., Wray, N.R., Bensimon, G., Hardiman, O., Chio, A., Veldink, J.H., Smith, G.D. and Mill, J. (2022) Genome-wide study of DNA methylation shows alterations in metabolic, inflammatory, and cholesterol pathways in ALS. Science Translational Medicine, 14 (633). Art. abj0264.

James, F., Goh, M.S.Y., Mouhtouris, E., Vogrin, S., Chua, K.Y.L., Holmes, N.E., Awad, A., Copaescu, A-M, De Luca, J.F., Zubrinich, C., Gin, D., Cleland, H., Douglas, A., Kern, J.S., Katelaris, C.H., Thien, F., Barnes, S., Yun, J., Tong, W., Smith, W.B, Carr, A., Anderson, T., Legg, A., Bourke, J., Mackay, L.K., Aung, A.K., Phillips, E.J. and Trubiano, J. (2022) Study protocol: Australasian Registry of Severe Cutaneous Adverse Reactions (AUS-SCAR). BMJ Open, 12 (8). Art. e055906.

Joseph, K.W., Halvas, E.K., Brandt, L.D., Patro, S.C., Rausch, J.W., Chopra, A., Mallal, S., Kearney, M.F., Coffin, J.M., Mellors, J.W. and Kirchhoff, F. (2022) Deep sequencing analysis of individual HIV-1 proviruses reveals frequent asymmetric long terminal repeats. Journal of Virology, 96 (13).

Kermode, W., De Santis, D., Truong, L., Della Mina, E., Salman, S., Thompson, G., Nolan, D., Loh, R., Mallon, D, McLean-Tooke, A., John, M., Tangye, S.G., O'Sullivan, M. and D'Orsogna, L.J. (2022) A novel targeted amplicon Next-Generation sequencing gene panel for the diagnosis of common variable immunodeficiency has a high diagnostic yield. The Journal of Molecular Diagnostics, 24 (6). pp. 586-599.

Khan, D.A., Banerji, A., Blumenthal, K.G., Phillips, E.J., Solensky, R., White, A.A., Bernstein, J.A., Chu, D.K., Ellis, A.K., Golden, D.B.K., Greenhawt, M.J., Horner, C.C., Ledford, D., Lieberman, J.A., Oppenheimer, J., Rank, M.A., Shaker, M.S., Stukus, D.R., Wallace, D. and Wang, J. (2022) Drug Allergy: A 2022 Practice Parameter Update. Journal of Allergy and Clinical Immunology .

Koo, G., Plager, J., Fahrenholz, J.M., Phillips, E. and Stone, C. (2022) Reactivity to heparin in patients with alpha-gal allergy. Annals of Allergy, Asthma & Immunology, 129 (4). pp. 515-517.

Koo, G., Stollings, J.L., Lindsell, C., Dear, M.L., Kripalani, S., Nelson, G.E., McCoy, A.B., Rice, T.W., Phillips, E.J. and Stone, C.A. (2022) Low-Risk penicillin allergy delabeling through direct oral challenge in immunocompromised and/or multiple drug allergy labeled patients in a critical care setting. The Journal of Allergy and Clinical Immunology: In Practice, 10 (6). pp. 1660-1663.

Koo, G., Yu, R., Phillips, E. and Stone, C.A. (2022) Retrospective stratification of cephalosporin allergy label risk using validated penicillin allergy frameworks. The Journal of Allergy and Clinical Immunology: In Practice .

Krantz, M.S. and Phillips, E.J. (2022) COVID-19 mRNA vaccine safety during the first 6 months of roll-out in the USA. The Lancet Infectious Diseases, 22 (6). P747-748.

Leffler, J., Trend, S., Ward, N.C., Grau, G.E., Hawke, S., Byrne, S.N., Kermode, A.G., French, M.A. and Hart, P.H. (2022) Circulating memory B Cells in early Multiple Sclerosis exhibit increased IgA+ Cells, globally decreased BAFF-R expression and an EBV-related IgM+ cell signature. Frontiers in Immunology, 13 . Art. 812317.

Lehloenya, R.J., Phillips, E.J., Pasieka, H.B. and Peter, J. (2022) Recognizing Drug Hypersensitivity in Pigmented Skin. Immunology and Allergy Clinics of North America, 42 (2). pp. 219-238.

Li, R., Li, C., Huang, Q., Liu, Z., Chen, J., Zhang, B., Liu, C., Shu, Y., Wang, Y., Kermode, A.G. and Qiu, W. (2022) Immunosuppressant and neuromyelitis optica spectrum disorder: Optimal treatment duration and risk of discontinuation. European Journal of Neurology . Early View.

Li, Y., Deshpande, P., Chopra, A., Choo, L., Gibson, A. and Phillips, E.J. (2022) A low‐cost, sensitive and specific PCR ‐based tool for rapid clinical detection of HLA‐B*35 alleles associated with delayed drug hypersensitivity reactions. HLA .

Loh, J.T., Shuman, J.H.B., Lin, A.S., Favret, N., Piazuelo, M.B., Mallal, S., Chopra, A., McClain, M.S., Cover, T.L. and Brodsky, I.E. (2022) Positive selection of mutations in the Helicobacter pylori katA 5′ untranslated region in a Mongolian Gerbil Model of gastric disease. Infection and Immunity, 90 (7). Art. e0000422.

Lorenzo, J.P.P., Sollano, M.H.M.Z., Salido, E.O., Li‐Yu, J., Tankeh‐Torres, S.A., Wulansari Manuaba, I.A.R., Rahman, M.M., Paul, B.J., Mok, M.Y., de Silva, M., Padhan, P., Lim, A.L., Marcial, M., Vicera, J.J., Haq, S.A., Salman, S., Liyanage, C.K., Keen, H.I., Yew Kuang, C., Wei, J.C‐C, Hellmi, R.Y., Chan, C.E. and Louthrenoo, W. (2022) 2021 Asia‐Pacific League of Associations for Rheumatology clinical practice guideline for treatment of gout. International Journal of Rheumatic Diseases, 25 (1). pp. 7-20.

Ma, X., Lu, Y., Peng, F., Wang, Y., Sun, X., Luo, W., Shen, S., Liu, Z., Kermode, A.G., Qiu, W. and Shu, Y. (2022) Serum NfL associated with anti-NMDA receptor encephalitis. Neurological Sciences .

Miller, A.L., Fuller-Carter, P.I., Masarini, K., Samardzija, M., Carter, K.W., Rashwan, R., Lim, X.R., Brunet, A.A., Chopra, A., Ram, R., Grimm, C., Ueffing, M., Carvalho, L.S. and Trifunović, D. (2022) Increased H3K27 trimethylation contributes to cone survival in a mouse model of cone dystrophy. Cellular and Molecular Life Sciences, 79 (8). Art. 409.

Morgan, W.H., Vukmirovic, A., Abdul-Rahman, A., Khoo, Y.J., Kermode, A.G., Lind, C.R., Dunuwille, J. and Yu, D.Y. (2022) Zero retinal vein pulsation amplitude extrapolated model in non-invasive intracranial pressure estimation. Scientific Reports, 12 (1). Art. 5190.

Mukherjee, E.M. and Phillips, E.J. (2022) Where to place etanercept and combination treatment for Stevens-Johnson syndrome and toxic epidermal necrolysis? Annals of Allergy, Asthma & Immunology, 129 (3). pp. 269-270.

Paramalingam, S., Needham, M., Harris, S., O’Hanlon, S., Mastaglia, F. and Keen, H. (2022) Correction to: Muscle B mode ultrasound and shear-wave elastography in idiopathic inflammatory myopathies (SWIM): criterion validation against MRI and muscle biopsy findings in an incident patient cohort. BMC Rheumatology, 6 (1). Art. 72.

Paramalingam, S., Needham, M., Harris, S., O’Hanlon, S., Mastaglia, F. and Keen, H. (2022) Muscle B mode ultrasound and shear-wave elastography in idiopathic inflammatory myopathies (SWIM): criterion validation against MRI and muscle biopsy findings in an incident patient cohort. BMC Rheumatology, 6 (1). Art. 47.

Parker, M.D., Stewart, H., Shehata, O.M., Lindsey, B.B., Shah, D.R., Hsu, S., Keeley, A.J., Partridge, D.G., Leary, S., Cope, A., State, A., Johnson, K., Ali, N., Raghei, R., Heffer, J., Smith, N., Zhang, P., Gallis, M., Louka, S.F., Hornsby, H.R., Alamri, H., Whiteley, M., Foulkes, B.H., Christou, S., Wolverson, P., Pohare, M., Hansford, S.E., Green, L.R., Evans, C., Raza, M., Wang, D., Firth, A.E., Edgar, J.R., Gaudieri, S., Mallal, S., Collins, M.O., Peden, A.A. and de Silva, T.I. (2022) Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections. Communications Biology, 5 (1). Art. 666.

Phillips, E.J., Bouchard, C.S. and Divito, S.J. (2022) Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis—Coordinating Research Priorities to Move the Field Forward. JAMA Dermatology, 158 (6). pp. 607-608.

Porter, M., Choshi, P., Pedretti, S., Chimbetete, T., Smith, R., Meintjes, G., Phillips, E., Lehloenya, R. and Peters, J. (2022) IFN-γ ELISpot in severe cutaneous adverse reactions to First-line Antituberculosis drugs in an HIV endemic setting. Journal of Investigative Dermatology . In Press.

Restuadi, R., Steyn, F.J., Kabashi, E., Ngo, S.T., Cheng, F-F, Nabais, M.F., Thompson, M.J., Qi, T., Wu, Y., Henders, A.K., Wallace, L., Bye, C.R., Turner, B.J., Ziser, L., Mathers, S., McCombe, P.A., Needham, M., Schultz, D., Kiernan, M.C., van Rheenen, W., van den Berg, L.H., Veldink, J.H., Ophoff, R., Gusev, A., Zaitlen, N., McRae, A.F., Henderson, R.D., Wray, N.R., Giacomotto, J. and Garton, F.C. (2022) Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1. Genome Medicine, 14 (1). Art. 7.

Roy, P., Sidney, J., Lindestam Arlehamn, C.S., Phillips, E., Mallal, S., Armstrong Suthahar, S.S., Billitti, M., Rubiro, P., Marrama, D., Drago, F., Vallejo, J., Suryawanshi, V., Orecchioni, M., Makings, J., Kim, P.J., McNamara, C.A., Peters, B., Sette, A. and Ley, K. (2022) Immunodominant MHC-II (Major Histocompatibility Complex II) Restricted Epitopes in Human Apolipoprotein B. Circulation Research, 131 (3). pp. 258-276.

Sharmin, S., Bovis, F., Malpas, C., Horakova, D., Havrdova, E.K., Izquierdo, G., Eichau, S., Trojano, M., Prat, A., Girard, M., Duquette, P., Onofrj, M., Lugaresi, A., Grand'Maison, F., Grammond, P., Sola, P., Ferraro, D., Terzi, M., Gerlach, O., Alroughani, R., Boz, C., Shaygannejad, V., van Pesch, V., Cartechini, E., Kappos, L., Lechner‐Scott, J., Bergamaschi, R., Turkoglu, R., Solaro, C., Iuliano, G., Granella, F., Van Wijmeersch, B., Spitaleri, D., Slee, M., McCombe, P., Prevost, J., Ampapa, R., Ozakbas, S., Sanchez‐Menoyo, J.L., Soysal, A., Vucic, S., Petersen, T., de Gans, K., Butler, E., Hodgkinson, S., Sidhom, Y., Gouider, R., Cristiano, E., Castillo‐Triviño, T., Saladino, M.L., Barnett, M., Moore, F., Rozsa, C., Yamout, B., Skibina, O., van der Walt, A., Buzzard, K., Gray, O., Hughes, S., Sempere, A.P., Singhal, B., Fragoso, Y., Shaw, C., Kermode, A., Taylor, B., Simo, M., Shuey, N., Al‐Harbi, T., Macdonell, R., Dominguez, J.A., Csepany, T., Sirbu, C.A., Sormani, M.P., Butzkueven, H. and Kalincik, T. (2022) Confirmed disability progression as a marker of permanent disability in multiple sclerosis. European Journal of Neurology, 29 (8). pp. 2321-2334.

Sooda, A., Rwandamuriye, F., Wanjalla, C.N., Jing, L., Koelle, D.M., Peters, B., Leary, S., Chopra, A., Calderwood, M.A., Mallal, S.A., Pavlos, R., Watson, M.ORCID: 0000-0002-6438-9225, Phillips, E.J. and Redwood, A.J. (2022) Abacavir inhibits but does not cause self-reactivity to HLA-B*57:01-restricted EBV specific T cell receptors. Communications Biology, 5 (1). Art. 133.

Stollings, J.L., Koo, G., Lindsell, C.J., Dear, M.L., McCoy, A., Rice, T.W., Phillips, E.J. and Stone, C.A. (2022) Risk-Stratified Management to Remove Low-Risk Penicillin Allergy Labels in the Patients with COVID-19 in the Intensive Care Unit. The Journal of Allergy and Clinical Immunology: In Practice . In Press.

Tarke, A., Coelho, C.H., Zhang, Z., Dan, J.M., Yu, E.D., Methot, N., Bloom, N.I., Goodwin, B., Phillips, E., Mallal, S., Sidney, J., Filaci, G., Weiskopf, D., da Silva Antunes, R., Crotty, S., Grifoni, A. and Sette, A. (2022) SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron. Cell, 185 (5). P847-859.

Theunissen, F., Anderton, R.S., Mastaglia, F.L., James, I., Bedlack, R. and Akkari, P.A. (2022) Intronic NEFH variant is associated with reduced risk for sporadic ALS and later age of disease onset. Scientific Reports, 12 (1). Art. 14739.

Thompson, G., Boan, P., Purtill, D., Cooney, J., Cannell, P., Wright, M. and John, M. (2022) QuantiFERON‐cytomegalovirus to predict clinically significant cytomegalovirus infection after allogeneic hematopoietic stem cell transplantation. Transplant Infectious Disease . Early View.

Wanjalla, C.N., Temu, T.M., Mashayekhi, M., Warren, C.M., Shepherd, B.E., Gangula, R., Fuseini, H., Bailin, S., Gabriel, C.L., Gangula, P., Madhur, M.S., Kalams, S., Mallal, S.A., Harrison, D.G., Beckman, J.A. and Koethe, J.R. (2022) Interleukin-17A is associated with flow-mediated dilation and interleukin-4 with carotid plaque in persons with HIV. AIDS, 36 (7). pp. 963-973.

Waters, S., Lee, S., Ariyanto, I., Kresoje, N., Leary, S., Munyard, K., Gaudieri, S., Irish, A., Keil, A.D., Allcock, R.J.N. and Price, P. (2022) Sequencing of the viral UL111a gene directly from clinical specimens reveals variants of HCMV-encoded IL-10 that are associated with altered immune responses to HCMV. International Journal of Molecular Sciences, 23 (9). Article 4644.

Waters, S., Lee, S., Ariyanto, I., Leary, S., Munyard, K., Gaudieri, S., Irish, A., Allcock, R.J.N. and Price, P. (2022) Variants of HCMV UL18 sequenced directly from clinical specimens associate with antibody and T-cell responses to HCMV. International Journal of Molecular Sciences, 23 (21). Article 12911.

Wilson, Y.A., Smithers‐Sheedy, H., Ostojic, K., Waight, E., Kruer, M.C., Fahey, M.C., Baynam, G., Gecz, J., Badawi, N. and McIntyre, S. (2022) Common data elements to standardize genomics studies in cerebral palsy. Developmental Medicine & Child Neurology . Early View.

Wu, P., Feng, Q., Kerchberger, V.E., Nelson, S.D., Chen, Q., Li, B., Edwards, T.L., Cox, N.J., Phillips, E.J., Stein, C.M., Roden, D.M., Denny, J.C. and Wei, W-Q (2022) Integrating gene expression and clinical data to identify drug repurposing candidates for hyperlipidemia and hypertension. Nature Communications, 13 (1). Art. 46.

Yin, W., Pham, C.V., Wang, T., Al Shamaileh, H., Chowdhury, R., Patel, S., Li, Y., Kong, L., Hou, Y., Zhu, Y., Chen, S., Xu, H., Jia, L., Duan, W. and Xiang, D. (2022) Inhibition of autophagy promotes the elimination of liver cancer stem cells by CD133 aptamer-targeted delivery of doxorubicin. Biomolecules, 12 (11). Article 1623.

Zarnegar‐Lumley, S., Stone, C.A., Smith, C.M., Hall, L.L., Luck, K.E., Koo, G., Plager, J.H., Phillips, E.J. and Friedman, D.L. (2022) Oncologist counseling practice and COVID‐19 vaccination outcomes for patients with history of PEG‐asparaginase hypersensitivity. Pediatric Blood & Cancer, 69 (7). Art. e29686.

2021

Alves, E., Taifour, S., Dolcetti, R., Chee, J., Nowak, A.K., Gaudieri, S. and Blancafort, P. (2021) Reprogramming the anti-tumor immune response via CRISPR genetic and epigenetic editing. Molecular Therapy - Methods & Clinical Development, 21 (11). pp. 592-606.

Arnold, A., Trevenen, M., Murray, K., Ong, J., Haywood, Z., Rueter, K., von Ungern-Sternberg, B. and Lucas, M. (2021) P26: Drug allergy reporting: Are we playing it safe in paediatrics? Internal Medicine Journal, 51 (S4). pp. 12-13.

Ashton, C., Paramalingam, S., Stevenson, B., Brusch, A. and Needham, M. (2021) Idiopathic inflammatory myopathies: A review. Internal Medicine Journal, 51 (6). pp. 845-852.

Awad, A., Mouhtouris, E., Nguyen-Robertson, C.V., Holmes, N., Chua, K.Y.L., Copaescu, A., James, F., Goh, M.S., Aung, A.K., Godfrey, D.I., Phillips, E.J., Gibson, A., Almeida, C.F. and Trubiano, J.A. (2021) Blister fluid as a cellular input for ex vivo diagnostics in drug-induced severe cutaneous adverse reactions improves sensitivity and explores immunopathogenesis. Journal of Allergy and Clinical Immunology: Global . In Press.

Bacchus-Souffan, C., Fitch, M., Symons, J., Abdel-Mohsen, M., Reeves, D.B., Hoh, R., Stone, M., Hiatt, J., Kim, P., Chopra, A., Ahn, H., York, V.A., Cameron, D.L., Hecht, F.M., Martin, J.N., Yukl, S.A., Mallal, S., Cameron, P.U., Deeks, S.G., Schiffer, J.T., Lewin, S.R., Hellerstein, M.K., McCune, J.M. and Hunt, P.W. (2021) Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART. PLoS Pathogens, 17 (1). e1009214.

Bailin, S.S., Ram, R., Chopra, A., Gangula, R., Leary, S., Mashayekhi, M., Gabriel, C.L., Woodward, B.O., Lima, M., Hannah, L., Kalams, S.A., Mallal, S.A., Koethe, J.R. and Wanjalla, C.N. (2021) Defining an adipose tissue single cell atlas to understand metabolic disease in HIV. Journal of the International AIDS Society . p. 4.

Bluestein, S.B., Yu, R., Stone, C.A. and Phillips, E.J. (2021) Reporting of Drug Reaction with Eosinophilia and Systemic Symptoms from 2002-2019 in the FDA Adverse Event Reporting System (FAERS). The Journal of Allergy and Clinical Immunology: In Practice, 9 (8). 3208-3211.e1.

Bukhari, W., Khalilidehkordi, E., Mason, D.F., Barnett, M.H., Taylor, B.V., Fabis-Pedrini, M., Kermode, A.G., Subramanian, S., Waters, P., Broadley, S.A., Abernethy, D., Bhuta, S., Blum, S., Boggild, M., Boundy, K., Brew, B.J., Brilot, F., Brownlee, W.J., Bundell, C.S., Butzkueven, H., Carroll, W.M., Chen, C., Clarke, L., Coulthard, A., Dale, R.C., Das, C., Dear, K., Fulcher, D., Gillis, D., Hawke, S., Heard, R., Henderson, A.P.D., Heshmat, S., Hodgkinson, S., Jimenez Sanchez, S., Kilpatrick, T.J., King, J., Kneebone, C., Kornberg, A.J., Lechner-Scott, J., Lin, M-W, Lynch, C., Macdonell, R.A.L., Marriott, M.P., McCombe, P.A., O’Gorman, C., Parratt, J.D.E., Pender, M.P., Pereira, J., Pollard, J.D., Prain, K.M., Ramanathan, S., Reddell, S.W., Shaw, C., Silvestrini, R.A., Slee, M., Spies, J., Stankovich, J., Sutton, I., Vincent, A., Vucic, S., Walsh, M., Willoughby, E., Wong, R.C., Woodhall, M. and Yiu, E.M. (2021) NMOSD and MS prevalence in the Indigenous populations of Australia and New Zealand. Journal of Neurology .

Caballero, M.L., Krantz, M.S., Quirce, S., Phillips, E. and Stone Jr., C.A. (2021) Hidden Dangers: Recognizing excipients as potential causes of drug and vaccine hypersensitivity reactions. The Journal of Allergy and Clinical Immunology: In Practice, 9 (8). pp. 2968-2982.

Chang, W-C, Abe, R., Anderson, P., Anderson, W., Ardern-Jones, M.R., Beachkofsky, T.M., Bellón, T., Biala, A.K., Bouchard, C., Cavalleri, G.L., Chapman, N., Chodosh, J., Choi, H.K., Cibotti, R.R., Divito, S.J., Dewar, K., Dehaeck, U., Etminan, M., Forbes, D., Fuchs, E., Goldman, J.L., Holmes, J.H., Hope, E.A., Hung, S-L, Hsieh, C-L, Iovieno, A., Jagdeo, J., Kim, M.K., Koelle, D.M., Lacouture, M.E., Le Pallec, S., Lehloenya, R.J., Lim, R., Lowe, A., McCawley, J., McCawley, J., Micheletti, R.G., Mockenhaupt, M., Niemeyer, K., Norcross, M.A., Oboh, D., Olteanu, C., Pasieka, H.B., Peters, J., Pirmohamed, M., Rieder, M., Saeed, H.N., Shear, N.H., Shieh, C., Straus, S., Sukasem, C., Sung, C., Trubiano, J.A., Tsou, S-Y, Ueta, M., Volpi, S., Wan, C., Wang, H., Wang, Z-Q, Weintraub, J., Whale, C., Wheatley, L.M., Whyte-Croasdaile, S., Williams, K.B., Wright, G., Yeung, S.N., Zhou, L., Chung, W-H, Phillips, E.J. and Carleton, B.C. (2021) Corrigendum to ‘SJS/TEN 2019: From science to translation’ [J. Dermatol. Sci. 98/1 (2020) 2–12]. Journal of Dermatological Science, 104 (2). pp. 146-147.

Clarke, L., Bukhari, W., O'Gorman, C.M., Khalilidehkordi, E., Arnett, S., Woodhall, M., Prain, K.M., Parratt, J.D.E., Barnett, M.H., Marriott, M.P., McCombe, P.A., Sutton, I., Boggild, M., Brownlee, W., Carroll, W.M., Hodgkinson, S., Macdonell, R.A.L., Mason, D.F., Pereira, J., Slee, M., Das, C., Henderson, A.P.D., Kermode, A.G., Lechner-Scott, J., Waters, P., Sun, J. and Broadley, S.A. (2021) Response to treatment in NMOSD: the Australasian experience. Multiple Sclerosis and Related Disorders, 58 . Art. 103408.

Copaescu, A., Gibson, A., Li, Y., Trubiano, J.A. and Phillips, E.J. (2021) An updated review of the diagnostic methods in delayed drug hypersensitivity. Frontiers in Pharmacology, 11 . Art. 573573.

Copaescu, A., Mouhtouris, E., Vogrin, S., James, F., Chua, K.Y.L., Holmes, N.E., Douglas, A., Slavin, M.A., Cleland, H., Zubrinich, C., Aung, A.K., Goh, M.S.Y., Phillips, E.J. and Trubiano, J.A. (2021) The role of In Vivo and Ex Vivo diagnostic tools in severe delayed Immune-Mediated adverse antibiotic drug reactions. The Journal of Allergy and Clinical Immunology: In Practice, 9 (5). 2010-2015.e4.

Copaescu, A.M., Phillips, E.J. and Trubiano, J.A. (2021) Antifungal hypersensitivity reactions and cross-reactivity patterns. Current Opinion in Infectious Diseases, 34 (6). pp. 559-572.

Currenti, J., Law, B.M.P., Qin, K., John, M., Pilkinton, M.A., Bansal, A., Leary, S., Ram, R., Chopra, A., Gangula, R., Yue, L., Warren, C., Barnett, L., Alves, E., McDonnell, W.J., Sooda, A., Heath, S.L., Mallal, S., Goepfert, P., Kalams, S.A. and Gaudieri, S. (2021) Cross-Reactivity to mutated viral immune targets can influence CD8+ T cell functionality: An alternative viral adaptation strategy. Frontiers in Immunology, 12 . Art. 746986.

Deshpande, P., Hertzman, R.J., Palubinsky, A.M., Giles, J.B., Karnes, J.H., Gibson, A. and Phillips, E.J. (2021) Immunopharmacogenomics: Mechanisms of HLA‐Associated Drug Reactions. Clinical Pharmacology & Therapeutics, 110 (3). pp. 607-615.

Dutta, T., Pesce, E-R, Maier, A.G. and Blatch, G.L. (2021) Role of the J domain protein family in the survival and pathogenesis of plasmodium falciparum. In: Shonhai, A., Picard, D. and Blatch, G.L., (eds.) Heat Shock Proteins of Malaria. Springer, Cham, pp. 97-123.

Hammond, S., Olsson-Brown, A., Grice, S., Gibson, A., Gardner, J., Castrejón-Flores, J.L., Jolly, C., Fisher, B.A., Steven, N., Betts, C., Pirmohamed, M., Meng, X. and Naisbitt, D.J. (2021) Checkpoint inhibition reduces the threshold for Drug-Specific T-Cell priming and increases the incidence of sulfasalazine hypersensitivity. Toxicological Sciences, 186 (1). pp. 58-69.

Hertzman, R., Deshpande, P., White, K., Gangula, R., Chopra, A., Ram, R., Leary, S., Zic, J., Zwerner, J., Gibson, A. and Phillips, E. (2021) Single-cell immunopathology of systemic contact allergy associated with corticosteroids. Journal of Allergy and Clinical Immunology, 147 (2). AB31.

Hertzman, R.J., Deshpande, P., Gibson, A. and Phillips, E.J. (2021) Role of pharmacogenomics in T-cell hypersensitivity drug reactions. Current Opinion in Allergy & Clinical Immunology, 21 (4). pp. 327-334.

Hertzman, R.J., Deshpande, P., Leary, S., Li, Y., Ram, R., Chopra, A., Cooper, D., Watson, M.ORCID: 0000-0002-6438-9225, Palubinsky, A.M., Mallal, S., Gibson, A. and Phillips, E.J. (2021) Visual genomics analysis studio as a tool to analyze multiomic data. Frontiers in Genetics, 12 . Art. 642012.

Koo, G., Anvari, S., Friedman, D.L., Zarnegar-Lumley, S., Szafron, V., Kahwash, B.M., Onasch, K.M., Hall, L., Phillips, E.J. and Stone, C.A. (2021) mRNA COVID-19 vaccine safety in patients with previous immediate hypersensitivity to Pegaspargase. The Journal of Allergy and Clinical Immunology: In Practice, 10 (1). P322-P325.

Krantz, M.S., Stone, C.A., Abreo, A. and Phillips, E.J. (2021) Reply to ‘‘The safety and efficacy of direct oral challenge in trimethoprim-sulfamethoxazole antibiotic allergy”. The Journal of Allergy and Clinical Immunology: In Practice, 9 (10). pp. 3849-3850.

Leary, S., Gaudieri, S., Parker, M.D., Chopra, A., James, I., Pakala, S., Alves, E., John, M., Lindsey, B.B., Keeley, A.J., Rowland-Jones, S.L., Swanson, M.S., Ostrov, D.A., Bubenik, J.L., Das, S., Sidney, J., Sette, A., de Silva, T.I., Phillips, E. and Mallal, S. (2021) Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level. bioRxiv: The preprint server for Biology .

Leary, S., Gaudieri, S., Parker, M.D., Chopra, A., James, I., Pakala, S., Alves, E., John, M., Lindsey, B.B., Keeley, A.J., Rowland-Jones, S.L., Swanson, M.S., Ostrov, D.A., Bubenik, J.L., Das, S.R., Sidney, J., Sette, A., de Silva, T.I., Phillips, E. and Mallal, S. (2021) Generation of a novel SARS-CoV-2 Sub-genomic RNA due to the R203K/G204R variant in Nucleocapsid: Homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level. Pathogens and Immunity, 6 (2). pp. 27-49.

Li, C., Wang, J., Sun, X., Li, R., Chang, Y., Wang, Y., Zhong, X., Kermode, A.G., Mao, Z. and Qiu, W. (2021) The current situation of diagnosis and treatment of neuromyelitis optica spectrum disorder: Experience with 461 cases from a single centre in South China. Journal of Neuroimmunology, 353 . Art. 577506.

Li, Y., Deshpande, P., Hertzman, R.J., Palubinsky, A.M., Gibson, A. and Phillips, E.J. (2021) Genomic Risk Factors Driving Immune-Mediated Delayed Drug Hypersensitivity Reactions. Frontiers in Genetics, 12 . Art. 641905.

Luo, W., Li, R., Chang, Y., She, H., Kermode, A.G. and Qiu, W. (2021) Myelin oligodendrocyte glycoprotein antibody-associated disorders coexisting with ankylosing spondylitis: Potential association between demyelination and tumor necrosis factor inhibitors. Multiple Sclerosis and Related Disorders, 51 . Art. 102889.

Maltby, V.E., Lea, R.A., Monif, M., Fabis-Pedrini, M.J., Buzzard, K., Kalincik, T., Kermode, A.G., Taylor, B., Hodgkinson, S., McCombe, P., Butzkueven, H., Barnett, M. and Lechner-Scott, J. (2021) Efficacy of Cladribine Tablets as a treatment for people with Multiple Sclerosis: Protocol for the CLOBAS Study (Cladribine, a Multicenter, Long-term Efficacy and Biomarker Australian Study). JMIR Research Protocols, 10 (10). Art. e24969.

Nakkam, N., Trubiano, J., Gibson, A. and Phillips, E.J. (2021) Considerations for cross-reactivity between vancomycin and other glycopeptides. The Journal of Allergy and Clinical Immunology: In Practice, 9 (8). Art. 3233.

Paramalingam, S., Needham, M., Raymond, W., Mastaglia, F., Lightowler, D., Morin, N., Counsel, P. and Keen, H.I. (2021) Muscle shear wave elastography, conventional B mode and power doppler ultrasonography in healthy adults and patients with autoimmune inflammatory myopathies: A pilot cross-sectional study. BMC Musculoskeletal Disorders, 22 (1). Art. 537.

Parker, M.D., Lindsey, B.B., Leary, S., Gaudieri, S., Chopra, A., Wyles, M., Angyal, A., Green, L.R., Parsons, P., Tucker, R.M., Brown, R., Groves, D., Johnson, K., Carrilero, L., Heffer, J., Partridge, D.G., Evans, C., Raza, M., Keeley, A.J., Smith, N., Filipe, A.D., Shepherd, J.G., Davis, C., Bennett, S., Sreenu, V.B., Kohl, A., Aranday-Cortes, E., Tong, L., Nichols, J., Thomson, E.C., Wang, D., Mallal, S. and de Silva, T.I. (2021) Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data. Genome Research, 31 (4). pp. 645-658.

Pilkinton, M.A., McDonnell, W.J., Barnett, L., Chopra, A., Gangula, R., White, K.D., Leary, S., Currenti, J., Gaudieri, S., Mallal, S.A., Kalams, S.A. and Silvestri, G. (2021) In chronic infection, HIV Gag-Specific CD4+ T cell receptor diversity is higher than CD8+ T cell receptor diversity and is associated with Less HIV quasispecies diversity. Journal of Virology, 95 (8). Art. e02380-20.

Restuadi, R., Garton, F.C., Benyamin, B., Lin, T., Williams, K.L., Vinkhuyzen, A., van Rheenen, W., Zhu, Z., Laing, N.G., Mather, K.A., Sachdev, P.S., Ngo, S.T., Steyn, F.J., Wallace, L., Henders, A.K., Visscher, P.M., Needham, M., Mathers, S., Nicholson, G., Rowe, D.B., Henderson, R.D., McCombe, P.A., Pamphlett, R., Blair, I.P., Wray, N.R. and McRae, A.F. (2021) Polygenic risk score analysis for amyotrophic lateral sclerosis leveraging cognitive performance, educational attainment and schizophrenia. European Journal of Human Genetics .

Ruknarong, L., Boonthongkaew, C., Chuangchot, N., Jumnainsong, A., Leelayuwat, N., Jusakul, A., Gaudieri, S. and Leelayuwat, C. (2021) Vitamin C supplementation reduces expression of circulating miR-451a in subjects with poorly controlled type 2 diabetes mellitus and high oxidative stress. PeerJ, 9 . Art. e10776.

Seedat, F., James, I., Loubser, S., Waja, Z., Mallal, S., Hoffmann, C., Tiemessen, C.T., Chaisson, R.E. and Martinson, N.A. (2021) Human leukocyte antigen associations with protection against tuberculosis infection and disease in human immunodeficiency virus-1 infected individuals, despite household exposure and immune suppression. Tuberculosis, 126 . Art. 102023.

Shonhai, A. and Blatch, G.L. (2021) Heat shock proteins of malaria: Highlights and future prospects. In: Shonhai, A., Picard, D. and Blatch, G.L., (eds.) Heat Shock Proteins of Malaria. Springer, Cham, pp. 237-246.

Singhania, A., Dubelko, P., Kuan, R., Chronister, W.D., Muskat, K., Das, J., Phillips, E.J., Mallal, S.A., Seumois, G., Vijayanand, P., Sette, A., Lerm, M., Peters, B. and Lindestam Arlehamn, C. (2021) CD4+CCR6+ T cells dominate the BCG-induced transcriptional signature. EBioMedicine, 74 . Art. 103746.

Singhania, A., Pham, J., Dhanwani, R., Frazier, A., Rezende Dutra, J., Marder, K.S., Phillips, E., Mallal, S., Amara, A.W., Standaert, D.G., Sulzer, D., Peters, B., Sette, A. and Lindestam Arlehamn, C.S. (2021) The TCR repertoire of α-synuclein-specific T cells in Parkinson’s disease is surprisingly diverse. Scientific Reports, 11 (1). Art. 302.

Tarke, A., Sidney, J., Kidd, C.K., Dan, J.M., Ramirez, S.I., Yu, E.D., Mateus, J., da Silva Antunes, R., Moore, E., Rubiro, P., Methot, N., Phillips, E., Mallal, S., Frazier, A., Rawlings, S.A., Greenbaum, J.A., Peters, B., Smith, D.M., Crotty, S., Weiskopf, D., Grifoni, A. and Sette, A. (2021) Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. Cell Reports Medicine, 2 (2). Art. 100204.

Theunissen, F., Anderton, R.S., Mastaglia, F.L., Flynn, L.L., Winter, S.J., James, I., Bedlack, R., Hodgetts, S., Fletcher, S., Wilton, S.D., Laing, N.G., MacShane, M., Needham, M., Saunders, A., MacKay-Sim, A., Melamed, Z., Ravits, J., Cleveland, D.W. and Akkari, P.A. (2021) Novel STMN2 variant linked to amyotrophic lateral sclerosis risk and clinical phenotype. Frontiers in Aging Neuroscience, 13 . Art. 658226.

Tian, J.ORCID: 0000-0001-9887-7211, Adams, M.J.ORCID: 0000-0002-7743-4515, Tay, J.W.T., James, I., Powell, S., Hughes, Q.W., Gilmore, G., Baker, R.I. and Tiao, J.Y-H. (2021) Estradiol-responsive miR-365a-3p interacts with tissue factor 3′UTR to modulate tissue factor-initiated thrombin generation. Thrombosis and Haemostasis, 121 (11). pp. 1483-1496.

Trend, S., Leffler, J., Jones, A.P., Cha, L., Gorman, S., Brown, D.A., Breit, S.N., Kermode, A.G., French, M.A., Ward, N.C. and Hart, P.H. (2021) Associations of serum short-chain fatty acids with circulating immune cells and serum biomarkers in patients with multiple sclerosis. Scientific Reports, 11 (1). Art. 5244.

Wanjalla, C.N., McDonnell, W.J., Ram, R., Chopra, A., Gangula, R., Leary, S., Mashayekhi, M., Simmons, J.D., Warren, C.M., Bailin, S., Gabriel, C.L., Guo, L., Furch, B.D., Lima, M.C., Woodward, B.O., Hannah, L., Pilkinton, M.A., Fuller, D.T., Kawai, K., Virmani, R., Finn, A.V., Hasty, A.H., Mallal, S.A., Kalams, S.A. and Koethe, J.R. (2021) Single-cell analysis shows that adipose tissue of persons with both HIV and diabetes is enriched for clonal, cytotoxic, and CMV-specific CD4+ T cells. Cell Reports Medicine, 2 (2). Art. 100205.

Waters, S., Agostino, M., Lee, S., Ariyanto, I., Kresoje, N., Leary, S., Munyard, K., Gaudieri, S., Gaff, J., Irish, A., Keil, A.D., Price, P., Allcock, R.J.N. and Campos, S.K. (2021) Sequencing directly from clinical specimens reveals genetic variations in HCMV-Encoded Chemokine Receptor US28 that may influence antibody levels and interactions with human chemokines. Microbiology Spectrum, 9 (2). Art. e00020-21.

Wilson, Y.A., McIntyre, S., Waight, E., Thornton, M., van Otterloo, S., Marmont, S.R., Kruer, M., Baynam, G., Gecz, J. and Badawi, N. (2021) People with cerebral palsy and their family’s preferences about genomics research. Public Health Genomics . Online First.

Zhong, M., Van der Walt, A., Stankovich, J., Kalincik, T., Buzzard, K., Skibina, O., Boz, C., Hodgkinson, S., Slee, M., Lechner-Scott, J., Macdonell, R., Prevost, J., Kuhle, J., Laureys, G., Van Hijfte, L., Alroughani, R., Kermode, A.G., Butler, E., Barnett, M., Eichau, S., van Pesch, V., Grammond, P., McCombe, P., Karabudak, R., Duquette, P., Girard, M., Taylor, B., Yeh, W., Monif, M., Gresle, M., Butzkueven, H. and Jokubaitis, V.G. (2021) Prediction of multiple sclerosis outcomes when switching to ocrelizumab. Multiple Sclerosis Journal . Online First.

2020

Abed, A., Calapre, L., Lo, J., Correia, S., Bowyer, S., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, Khattak, M., Millward, M. and Gray, E. (2020) 301MO Genomic HLA as a predictive biomarker for survival among non-small cell lung cancer patient treated with single agent immunotherapy. Annals of Oncology, 31 (Supp. 6). S1359-S1360.

Abed, A., Calapre, L., Lo, J., Correia, S., Bowyer, S., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, Khattak, M.A., Millward, M. and Gray, E.S. (2020) Prognostic value of HLA-I homozygosity in patients with non-small cell lung cancer treated with single agent immunotherapy. Journal for ImmunoTherapy of Cancer, 8 (2). Art. e001620.

Ashton, C., Banham, N. and Needham, M. (2020) Acute spontaneous spinal cord infarction: Utilisation of hyperbaric oxygen treatment, cerebrospinal fluid drainage and pentoxifylline. Diving and Hyperbaric Medicine Journal, 50 (4). pp. 325-331.

Barakat, L., Torres, M.J., Phillips, E.J., Caminati, M., Chang, Y-S, Caimmi, D., Sanchez-Borges, M., Rosenwasser, L., Didier, A., de Blay, F., Fontaine, J-F, Bosse, I., Lefevre, S., Bassani, C., De Filippo, M., Ansotegui, I., Morais-Almeida, M., Ebisawa, M., Martin, B., Yu-Hor Thong, B., Demoly, P. and Tanno, L.K. (2020) Biological treatments in allergy: Prescribing patterns and management of hypersensitivity reactions. The Journal of Allergy and Clinical Immunology: In Practice, 9 (3). 1396-1399.e2.

Blumenthal, K.G., Harkness, T., Phillips, E.J., Ramsey, A., Banerji, A., Samarakoon, U., Stone, C., Fu, X., Khan, D.A., Otani, I., Camargo, C.A., Zhang, Y. and Donelan, K. (2020) Patient characteristics and concerns about drug allergy: A report from the United States drug allergy registry. The Journal of Allergy and Clinical Immunology: In Practice, 8 (9). pp. 2958-2967.

Blumenthal, K.G. and Phillips, E. (2020) Positioning drug allergy delabeling as a critical tool for precision medicine, quality improvement, and public health. The Journal of Allergy and Clinical Immunology: In Practice, 8 (9). pp. 2916-2919.

Broadley, S.A., Bukhari, W., Khalilidehkordi, E., Mason, F., Barnett, M.H., Taylor, B.V., Fabis-Pedrini, M., Kermode, A.G., Subramanian, S. and Waters, P. (2020) Prevalence of NMOSD and MS in the indigenous populations of Australia and New Zealand. Multiple Sclerosis Journal, 26 (9). NP44.

Chang, W-C, Abe, R., Anderson, P., Anderson, W., Ardern-Jones, M.R., Beachkofsky, T.M., Bellón, T., Biala, A.K., Bouchard, C., Cavalleri, G.L., Chapman, N., Chodosh, J., Choi, H.K., Cibotti, R.R., Divito, S.J., Dewar, K., Dehaeck, U., Etminan, M., Forbes, D., Fuchs, E., Goldman, J.L., Holmes, J.H., Hope, E.A., Hung, S-I, Hsieh, C-L, Iovieno, A., Jagdeo, J., Kim, M.K., Koelle, D.M., Lacouture, M.E., Le Pallec, S., Lehloenya, R.J., Lim, R., Lowe, A., McCawley, J., McCawley, J., Micheletti, R.G., Mockenhaupt, M., Niemeyer, K., Norcross, M.A., Oboh, D., Olteanu, C., Pasieka, H.B., Peter, J., Pirmohamed, M., Rieder, M., Saeed, H.N., Shear, N.H., Shieh, C., Straus, S., Sukasem, C., Sung, C., Trubiano, J.A., Tsou, S-Y, Ueta, M., Volpi, S., Wan, C., Wang, H., Wang, Z-Q, Weintraub, J., Whale, C., Wheatley, L.M., Whyte-Croasdaile, S., Williams, K.B., Wright, G., Yeung, S.N., Zhou, L., Chung, W-H, Phillips, E.J. and Carleton, B.C. (2020) SJS/TEN 2019: From Science to Translation. Journal of Dermatological Science, 98 (1). pp. 2-12.

Chen, C., Wu, Y., Cui, C., Zhao, Y., Sun, X., Wang, Y., Liu, C., Wu, H., Zhong, X., Kermode, A.G., Peng, L. and Qiu, W. (2020) Identification of a Distinct Exosomal microRNA Profile in Neuromyelitis Optica Spectrum Disorders by Next-generation Sequencing. Multiple Sclerosis Journal, 26 (9). NP75-NP76.

Chen, C., Wu, Y., Li, M., Cui, C., Zhao, Y., Sun, X., Wang, Y., Liu, C., Wu, H., Zhong, X., Kermode, A.G., Peng, L. and Qiu, W. (2020) Different exosomal microRNA profile in Aquaporin-4 Antibody Positive Neuromyelitis Optica Spectrum Disorders. Frontiers in Immunology, 11 . Art. 1064.

Chua, K.Y.L., Vogrin, S., Bury, S., Douglas, A., Holmes, N.E., Tan, N., Brusco, N.K., Hall, R., Lambros, B., Lean, J., Stevenson, W., Devchand, M., Garrett, K., Thursky, K., Grayson, M.L., Slavin, M.A., Phillips, E.J. and Trubiano, J.A. (2020) The penicillin allergy delabeling program: A Multicenter Whole-of-Hospital health services intervention and comparative effectiveness study. Clinical Infectious Diseases, 73 (3). pp. 487-496.

Cimino, C., Allos, B.M. and Phillips, E.J. (2020) A Review of β-Lactam–Associated Neutropenia and Implications for Cross-reactivity. Annals of Pharmacotherapy, 55 (8). pp. 1037-1049.

Coleman, D.T., Stone, C.A., Wei, W-Q and Phillips, E.J. (2020) Penicillin allergy labels drive perioperative prophylactic antibiotic selection in orthopedic procedures. The Journal of Allergy and Clinical Immunology: In Practice . In Press.

Coleman, D.T., Stone, C.A., Wei, W-Q and Phillips, E.J. (2020) Readiness for PENicillin allergy testing: Perception of Allergy Label (PEN-PAL) Survey. The Journal of Allergy and Clinical Immunology: In Practice, 8 (9). 3180-3182.e4.

Copaescu, A., Rose, M., Mouhtouris, E., Chua, K.Y., Holmes, N.E., Phillips, E.J. and Trubiano, J.A. (2020) Delayed hypersensitivity associated with amoxicillin‐clavulanate. Allergy . Early View.

Copaescu, A., Smibert, O., Gibson, A., Phillips, E.J. and Trubiano, J.A. (2020) The role of IL-6 and other mediators in the cytokine storm associated with SARS-CoV-2 infection. Journal of Allergy and Clinical Immunology, 146 (3). 518-534.e1.

Deshpande, P., Bundell, C., McKinnon, E., Hellard, M., Ffrench, R., Wilkinson, A.L., Drummer, H., Gaudieri, S. and Lucas, M. (2020) Frequent occurrence of low-level positive autoantibodies in chronic hepatitis C. Pathology, 52 (5). pp. 576-583.

Dutta, T., Singh, H., Gestwicki, J.E. and Blatch, G.L. (2020) Exported plasmodial J domain protein, PFE0055c, and PfHsp70-x form a specific co-chaperone-chaperone partnership. Cell Stress and Chaperones .

Esfandiary, T., Park, J.K., Alexanderson, H., Regardt, M., Needham, M., de Groot, I., Sarver, C., Lundberg, I.E., de Visser, M., Song, Y.W., DiRenzo, D., Bingham, C.O., Christopher-Stine, L. and Mecoli, C.A. (2020) Assessing the content validity of patient-reported outcome measures in adult myositis: A report from the OMERACT myositis working group. Seminars in Arthritis and Rheumatism, 50 (5). pp. 943-948.

Fuller-Carter, P.I., Brunet, A., Carter, K., Chopra, A., Hunt, D. and Carvlho, L. (2020) Comparative transcriptome analysis of cone photoreceptors from inherited retinal degeneration mouse models using single cell RNA-seq. Investigative Ophthalmology & Visual Science, 61 (7). Art. 726.

Habermann, A.C., Gutierrez, A.J., Bui, L.T., Yahn, S.L., Winters, N.I., Calvi, C.L., Peter, L., Chung, M-I, Taylor, C.J., Jetter, C., Raju, L., Roberson, J., Ding, G., Wood, L., Sucre, J.M.S., Richmond, B.W., Serezani, A.P., McDonnell, W.J., Mallal, S., Bacchetta, M.J., Loyd, J.E., Shaver, C.M., Ware, L.B., Bremner, R., Walia, R., Blackwell, T.S., Banovich, N.E. and Kropski, J.A. (2020) Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis. Science Advances, 6 (28). Art. eaba1972.

Kidman, J., Principe, N., Watson, M.ORCID: 0000-0002-6438-9225, Lassmann, T., Holt, R.A., Nowak, A.K., Lesterhuis, W.J., Lake, R.A. and Chee, J. (2020) Characteristics of TCR repertoire associated with successful immune checkpoint therapy responses. Frontiers in Immunology, 11 . Art. 587014.

Krantz, M.S., Stone, C.A., Yu, R., Adams, S.N. and Phillips, E.J. (2020) Criteria for intradermal skin testing and oral challenge in patients labeled as fluoroquinolone allergic. The Journal of Allergy and Clinical Immunology: In Practice, 9 (2). 1024-1028.e3.

Krebs, K., Bovijn, J., Zheng, N., Lepamets, M., Censin, J.C., Jürgenson, T., Särg, D., Abner, E., Laisk, T., Luo, Y., Skotte, L., Geller, F., Feenstra, B., Wang, W., Auton, A., Raychaudhuri, S., Esko, T., Metspalu, A., Laur, S., Roden, D.M., Wei, W-Q, Holmes, M.V., Lindgren, C.M., Phillips, E.J., Mägi, R., Milani, L., Fadista, J., Agee, M., Aslibekyan, S., Bell, R.K., Bryc, K., Clark, S.K., Elson, S.L., Fletez-Brant, K., Fontanillas, P., Furlotte, N.A., Gandhi, P.M., Heilbron, K., Hicks, B., Hinds, D.A., Huber, K.E., Jewett, E.M., Jiang, Y., Kleinman, A., Lin, K-H, Litterman, N.K., Luff, M.K., McCreight, J.C., McIntyre, M.H., McManus, K.F., Mountain, J.L., Mozaffari, S.V., Nandakumar, P., Noblin, E.S., Northover, C.A.M., O’Connell, J., Petrakovitz, A.A., Pitts, S.J., Poznik, G.D., Sathirapongsasuti, J.F., Shastri, A.J., Shelton, J.F., Shringarpure, S., Tian, C., Tung, J.Y., Tunney, R.J., Vacic, V., Wang, X. and Zare, A.S. (2020) Genome-wide study identifies association between HLA-B∗55:01 and Self-Reported Penicillin Allergy. The American Journal of Human Genetics, 107 (4). pp. 612-621.

Learmonth, Y.C.ORCID: 0000-0002-4857-8480, Chan, Z., Correia, H.ORCID: 0000-0003-2717-2294, Hathorn, D., Kermode, A., Smith, C. and Walker, D. (2020) Exercise participation and promotion in the multiple sclerosis community; perspectives across varying socio-ecological levels. Disability and Rehabilitation . Latest Article.

Learmonth, Y.C.ORCID: 0000-0002-4857-8480, Chan, Z., Scholes-Robertson, E., Correia, H.ORCID: 0000-0003-2717-2294, Hathorn, D., Kermode, A., Smith, C. and Walker, D. (2020) Motivation to engage in and promote exercise is driven by availability and education; Perspectives of the multiple sclerosis community. Multiple Sclerosis Journal, 26 (3). NP1-NP35.

Lehloenya, R.J., Peter, J.G., Copascu, A., Trubiano, J.A. and Phillips, E.J. (2020) Delabeling delayed drug hypersensitivity: How far can you safely go? The Journal of Allergy and Clinical Immunology: In Practice, 8 (9). 2878-2895.e6.

Li, R., Wang, J., Li, J., Wang, Y., Wu, H., Fan, P., Lau, A.Y., Kermode, A.G. and Qiu, W. (2020) Treatment patterns of patients with multiple sclerosis in Guangzhou, China. Neurology Asia, 25 (2). pp. 173-182.

Li, R., Wang, J., Li, J., Wang, Y., Wu, H., Fan, P., Zhong, X., Lau, A.Y., Kermode, A.G. and Qiu, W. (2020) Treatment patterns of patients with multiple sclerosis in China: A single-center experience. Multiple Sclerosis Journal, 26 (9). NP45-NP46.

Lindestam Arlehamn, C.S., Dhanwani, R., Pham, J., Kuan, R., Frazier, A., Rezende Dutra, J., Phillips, E., Mallal, S., Roederer, M., Marder, K.S., Amara, A.W., Standaert, D.G., Goldman, J.G., Litvan, I., Peters, B., Sulzer, D. and Sette, A. (2020) α-Synuclein-specific T cell reactivity is associated with preclinical and early Parkinson’s disease. Nature Communications, 11 (1). pp. 1-11.

Ma, X., Kermode, A.G., Hu, X. and Qiu, W. (2020) NMOSD acute attack: Understanding, treatment and innovative treatment prospect. Journal of Neuroimmunology, 348 . Art. 577387.

Ma, X., Kermode, A.G., Hu, X. and Qiu, W. (2020) Risk of relapse in patients with neuromyelitis optica spectrum disorder: Recognition and preventive strategy. Multiple Sclerosis and Related Disorders, 46 . Art. 102522.

Mangan, B.L., McAlister, R.K., Balko, J.M., Johnson, D.B., Moslehi, J.J., Gibson, A. and Phillips, E.J. (2020) Evolving insights into the mechanisms of toxicity associated with immune checkpoint inhibitor therapy. British Journal of Clinical Pharmacology . Early View.

Marsh‐Wakefield, F., Ashhurst, T., Trend, S., McGuire, H.M., Juillard, P., Zinger, A., Jones, A.P., Kermode, A.G., Hawke, S., Grau, G.E., Hart, P.H. and Byrne, S.N. (2020) IgG 3 + B cells are associated with the development of multiple sclerosis. Clinical & Translational Immunology, 9 (5).

Mateus, J., Grifoni, A., Tarke, A., Sidney, J., Ramirez, S.I., Dan, J.M., Burger, Z.C., Rawlings, S.A., Smith, D.M., Phillips, E., Mallal, S., Lammers, M., Rubiro, P., Quiambao, L., Sutherland, A., Yu, E.D., da Silva Antunes, R., Greenbaum, J., Frazier, A., Markmann, A.J., Premkumar, L., de Silva, A., Peters, B., Crotty, S., Sette, A. and Weiskopf, D. (2020) Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. Science, 370 (6512). pp. 89-94.

Mateus, J., Grifoni, A., Voic, H., Angelo, M.A., Phillips, E., Mallal, S., Sidney, J., Sette, A. and Weiskopf, D. (2020) Identification of novel yellow fever Class II epitopes in YF-17D vaccinees. Viruses, 12 (11). Article 1300.

Mathew, V., Wencel, M., Habib, A.A., Goyal, N.A., Needham, M. and Mozaffar, T. (2020) Attitudes toward non-interventional observational studies in US and Australian patients with sporadic inclusion body myositis. Journal of Clinical Neuromuscular Disease, 21 (4). pp. 246-247.

Mohannak, N., Pattison, G., Radich, B., Hird, K., Godecke, E., Mastaglia, F. and Needham, M. (2020) Exploring the efficacy of the expiratory muscle strength trainer to improve swallowing in inclusion body myositis: A pilot study. Neuromuscular Disorders, 30 (4). pp. 294-300.

Morgan, W.H., Khoo, Y.J., Kermode, A.G., Lind, C.R., Hazelton, M.L.., Parsons, K.E. and Yu, D.Y. (2020) Utilisation of retinal vein photoplethysmography to measure intracranial pressure. Journal of Neurology, Neurosurgery & Psychiatry, 92 (1). pp. 104-106.

Nabais, M.F., Lin, T., Benyamin, B., Williams, K.L., Garton, F.C., Vinkhuyzen, A.A.E., Zhang, F., Vallerga, C.L., Restuadi, R., Freydenzon, A., Zwamborn, R.A.J., Hop, P.J., Robinson, M.R., Gratten, J., Visscher, P.M., Hannon, E., Mill, J., Brown, M.A., Laing, N.G., Mather, K.A., Sachdev, P.S., Ngoh, S.T., Steyn, F.J., Wallace, L., Henders, A.K., Needham, M., Veldink, J.H., Mathers, S., Nicholson, G., Rowe, D.B., Henderson, R.D., McCombe, P.A., Pamphlett, R., Yang, J., Blair, I.P., McRae, A.F. and Wray, N.R. (2020) Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis. Genomic Medicine, 5 (1). Art. 10.

Naisbitt, D.J., Park, B.K., Sakatis, M.Z., Hillegas, A., Gibson, A., Faulkner, L., Lister, A., Watkinson, J. and Ogese, M.O. (2020) Development of an Improved T-cell assay to assess the intrinsic immunogenicity of haptenic compounds. Toxicological Sciences, 175 (2). pp. 266-278.

Nakkam, N., Gibson, A., Mouhtouris, E., Konvinse, K., Holmes, N., Chua, K.Y., Deshpande, P., Li, D., Ostrov, D.A., Trubiano, J. and Phillips, E.J. (2020) Cross-reactivity between vancomycin, teicoplanin and telavancin in HLA-A*32:01 positive vancomycin DRESS patients sharing an HLA-Class II haplotype. Journal of Allergy and Clinical Immunology, 147 (1). P403-P405.

Nicoletti, P., Carr, D.F., Barrett, S., McEvoy, L., Friedmann, P.S., Shear, N.H., Nelson, M.R., Chiriac, A.M., Blanca-López, N., Cornejo, J.A., Gaeta, F., Nakonechna, A., Torres, M.J., Caruso, C., Valluzzi, R.L., Floratos, A., Shen, Y., Pavlos, R.K., Phillips, E.J., Demoly, P., Romano, A., Blanca, M. and Pirmohamed, M. (2020) Beta-lactam-induced immediate hypersensitivity reactions: A genome-wide association study of a deeply phenotyped cohort. Journal of Allergy and Clinical Immunology, 147 (5). 1830-1837.e15.

Pavlos, R., Deshpande, P., Chopra, A., Leary, S., Strautins, K., Nolan, D., Thorborn, D., Shaefer, M., Rauch, A., Dunn, D., Montaner, J., Rachlis, A., Almeida, C.M., Choo, L., James, I., Redwood, A.J., Li, Y., Gaudieri, S., Mallal, S.A. and Phillips, E.J. (2020) New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals. Human Immunology, 81 (6). pp. 300-304.

Principe, N., Kidman, J., Goh, S., Tilsed, C.M., Fisher, S.A., Fear, V.S., Forbes, C.A., Zemek, R.M., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, Dick, I.M., Boon, L., Holt, R.A., Lake, R.A., Nowak, A.K., Lesterhuis, W.J., McDonnell, A.M. and Chee, J. (2020) Tumor infiltrating effector memory Antigen-Specific CD8+ T Cells predict response to immune checkpoint therapy. Frontiers in Immunology, 11 . Art. 584423.

Pytte, J., Anderton, R.S., Flynn, L.L., Theunissen, F., Jiang, L., Pitout, I., James, I., Mastaglia, F.L., Saunders, A.M., Bedlack, R., Siddique, T., Siddique, N. and Akkari, P.A. (2020) Association of a structural variant within the SQSTM1 gene with amyotrophic lateral sclerosis. Neurology Genetics, 6 (2). Art. e406.

Pytte, J., Flynn, L.L., Anderton, R.S., Mastaglia, F.L., Theunissen, F., James, I., Pfaff, A.ORCID: 0000-0002-2231-9800, Kõks, S., Saunders, A.M., Bedlack, R., Burns, D.K., Lutz, M.W., Siddique, N., Siddique, T., Roses, A.D. and Akkari, P.A. (2020) Disease-modifying effects of an SCAF4 structural variant in a predominantly SOD1 ALS cohort. Neurology Genetics, 6 (4). e470.

Redwood, A.J., Masters, L.L., Chan, B., Leary, S., Forbes, C., Jonjic, S., Juranić Lisnić, V., Lisnić, B., Smith, L.M. and Jung, J.U. (2020) Repair of an attenuated low-passage murine cytomegalovirus bacterial artificial chromosome identifies a novel spliced gene essential for salivary gland tropism. Journal of Virology, 94 (22). Art. e01456-20.

Stone, C.A., Stollings, J.L., Lindsell, C. J., Dear, M.L., Buie, R.B., Rice, T.W. and Phillips, E.J. (2020) Risk-stratified Management to Remove Low-Risk Penicillin Allergy Labels in the ICU. American Journal of Respiratory and Critical Care Medicine, 201 (12). pp. 1572-1575.

Stone, C.A., Trubiano, J., Coleman, D.T., Rukasin, C.R.F. and Phillips, E.J. (2020) The challenge of de‐labeling penicillin allergy. Allergy, 75 (2). pp. 273-288.

Stone, C.A., Trubiano, J.A. and Phillips, E.J. (2020) Testing strategies and predictors for evaluating immediate and delayed reactions to cephalosporins. The Journal of Allergy and Clinical Immunology: In Practice, 9 (1). 435-444.e13.

Sun, X., Qiu, W., Wang, J., Wang, S., Wang, Y., Zhong, X., Liu, C., Cui, C., Hong, H., Yang, H., Li, X-J, Lu, Z., Hu, X., Kermode, A.G. and Peng, L. (2020) Myelin oligodendrocyte glycoprotein-associated disorders are associated with HLA subtypes in a Chinese paediatric-onset cohort. Journal of Neurology, Neurosurgery & Psychiatry, 91 (7). pp. 733-739.

Sun, X., Wang, S., Wang, J., Wang, Y., Zhong, X., Liu, C., Cui, C., Hong, H., Yang, H., Li, X., Lu, Z., Hu, X., Kermode, A.G., Peng, L. and Qiu, W. (2020) Myelin oligodendrocyte glycoprotein encephalomyelitis is associated with HLA subtypes in a Chinese paediatric-onset cohort. Multiple Sclerosis Journal, 26 (9). NP87.

Sutton, E., De Santis, D., Hay, L., McKinnon, E., D'Orsogna, L. and Joske, D. (2020) Correlating HLA associations with follicular lymphoma in an Australian data set: A pilot study. HLA . Early View.

Tchan, M., Henderson, R., Kornberg, A., Kairaitis, K., Fuller, M., Davis, M., Ellaway, C., Reardon, K., Corbett, A., Needham, M. and McKelvie, P. (2020) Is it Pompe Disease? Australian diagnostic considerations. Neuromuscular Disorders, 30 (5). P389-P399.

Trend, S., Jones, A.P., Fabis-Pedrini, M.J., Carroll, W.M., Booth, D.R., Lucas, R.M., French, M., Byrne, S.N., Kermode, A.G. and Hart, P.H. (2020) Narrowband UVB phototherapy alters peripheral blood immune cell frequencies in people with clinically isolated syndrome. Multiple Sclerosis Journal, 26 (9). NP52-NP53.

Trend, S., Jones, A.P., Fabis-Pedrini, M.J., Carroll, W.M., Booth, D.R., Lucas, R.M., French, M.A., Byrne, S.N., Kermode, A.G. and Hart, P.H. (2020) Narrowband UVB phototherapy alters peripheral blood immune cell frequencies in people with clinically isolated syndrome. Multiple Sclerosis Journal, 26 (3). NP16-NP17.

Trend, S., Leffler, J., Cooper, M.N., Byrne, S.N., Kermode, A.G., French, M.A. and Hart, P.H. (2020) Narrowband UVB phototherapy reduces TNF production by B‐cell subsets stimulated via TLR7 from individuals with early multiple sclerosis. Clinical & Translational Immunology, 9 (10).

Triplett, J.D., Vijayan, S., Rajanayagam, S., Tuch, P. and Kermode, A.G. (2020) Pregnancy outcomes amongst multiple sclerosis females with third trimester natalizumab use. Multiple Sclerosis and Related Disorders, 40 . Art. 101961.

Trubiano, J.A., Vogrin, S., Chua, K.Y.L., Bourke, J., Yun, J., Douglas, A., Stone, C.A., Yu, R., Groenendijk, L., Holmes, N.E. and Phillips, E.J. (2020) Development and validation of a penicillin allergy clinical decision rule. JAMA Internal Medicine, 180 (5). pp. 745-752.

Trubiano, J.A., Vogrin, S., Chua, K.Y.L., Bourke, J., Yun, J., Douglas, A., Stone, C.A., Yu, R., Groenendijk, L., Holmes, N.E., Phillips, E.J. and Resnick, M.J. (2020) Re: Development and validation of a penicillin allergy clinical decision rule. Journal of Urology, 204 (4). p. 869.

Valenzuela, J.L., Lloyd, S.S.ORCID: 0000-0002-0118-3094, Mastaglia, F.L. and Dawkins, R.L. (2020) Adipose invasion of muscle in Wagyu cattle: Monitoring by histology and melting temperature. Meat Science, 163 . Article 108063.

Vethody, C., Yu, R., Keck, J.M., Onasch, M.K., Stone, C.A. and Phillips, E.J. (2020) Safety, efficacy and effectiveness of delabeling in patients with multiple drug allergy labels. The Journal of Allergy and Clinical Immunology: In Practice, 9 (2). pp. 922-928.

Voic, H., de Vries, R.D., Sidney, J., Rubiro, P., Moore, E., Phillips, E., Mallal, S., Schwan, B., Weiskopf, D., Sette, A., Grifoni, A. and Goodrum, F. (2020) Identification and characterization of CD4+ T cell epitopes after Shingrix vaccination. Journal of Virology, 94 (24).

Vucic, S., Ryder, J., Mekhael, L., Henderson, R.D., Mathers, S., Needham, M., Schultz, D.W. and Kiernan, M.C. (2020) Phase 2 randomized placebo controlled double blind study to assess the efficacy and safety of tecfidera in patients with amyotrophic lateral sclerosis (TEALS Study). Medicine, 99 (6). e18904.

2019

Abed, A., Khattak, A., Millward, M., Chopra, A. and Gray, E. (2019) Genomic HLA heterozygosity as a predictive marker for survival in lung cancer patients post immunotherapy. Asia-Pacific Journal of Clinical Oncology, 15 (S9). pp. 161-162.

Almeida, C-A, van Miert, P., O’Driscoll, K., Zoet, Y.M., Chopra, A., Witt, C., John, M., Claas, F.H.J. and D’Orsogna, L.J. (2019) Virus-specific T cell clonotypes may contribute to drug hypersensitivity reactions via heterologous immunity. Journal of Allergy and Clinical Immunology, 144 (2). 608-611.e4.

Avila-Rios, S., Carlson, J.M., John, M., Mallal, S. and Brumme, Z.L. (2019) Clinical and evolutionary consequences of HIV adaptation to HLA: implications for vaccine and cure. Current Opinion in HIV and AIDS, 14 (3). pp. 194-204.

Blumenthal, K.G., Peter, J.G., Trubiano, J.A. and Phillips, E.J. (2019) Antibiotic allergy. The Lancet, 393 (10167). pp. 183-198.

Cheng, H., Capponi, S., Wakeling, E., Marchi, E., Li, Q., Zhao, M., Weng, C., Stefan, P.G., Ahlfors, H., Kleyner, R., Rope, A., Lumaka, A., Lukusa, P., Devriendt, K., Vermeesch, J., Posey, J.E., Palmer, E.E., Murray, L., Leon, E., Diaz, J., Worgan, L., Mallawaarachchi, A., Vogt, J., Munnik, S.A., Dreyer, L., Baynam, G., Ewans, L., Stark, Z., Lunke, S., Gonçalves, A.R., Soares, G., Oliveira, J., Fassi, E., Willing, M., Waugh, J.L., Faivre, L., Riviere, J‐B, Moutton, S., Mohammed, S., Payne, K., Walsh, L., Begtrup, A., Guillen Sacoto, M.J., Douglas, G., Alexander, N., Buckley, M.F., Mark, P.R., Adès, L.C., Sandaradura, S.A., Lupski, J.R., Roscioli, T., Agrawal, P.B., Kline, A.D., Wang, K., Timmers, H.T.M. and Lyon, G.J. (2019) Missense variants in TAF1 and developmental phenotypes: Challenges of determining pathogenicity. Human Mutation . Early View.

Currenti, J., Chopra, A., John, M., Leary, S., McKinnon, E., Alves, E., Pilkinton, M., Smith, R., Barnett, L., McDonnell, W.J., Lucas, M., Noel, F., Mallal, S., Conrad, J.A., Kalams, S.A. and Gaudieri, S. (2019) Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV. PLoS Pathogens, 15 (12).

D'Orsogna, L., Almeida, C., van Miert, P., Zoet, Y., Anholts, J., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, Witt, C., John, M. and Claas, F. (2019) Drug induced alloreactivity: A new paradigm for allorecognition. American Journal of Transplantation, 19 (9). pp. 2606-2613.

Fabis-Pedrini, M.J., Kuhle, J., Michalak, Z., Walters, S., Trend, S., Jones, A.P., Carroll, W.M., Lucas, R., Hart, P.H. and Kermode, A.G. (2019) Serum neurofilament light chain levels among patients with clinically isolated syndrome. In: PACTRIMS 2019, 13 - 15 November 2019, Singapore

Gaudieri, S., Currenti, J., John, M., McKinnon, E., Leary, S., Chopra, A., Pilkington, M., Smith, R., Barnett, L., McDonnell, W., Lucas, M., Mallal, S., Conrad, J. and Kalams, S. (2019) Deep sequence analysis of HIV adaptation following vertical transmission: Importance of human leucocyte antigen-driven selection on the evolution of HIV. Journal of the International AIDS Society, 22 (S5). p. 39.

Grifoni, A., Moore, E., Voic, H., Sidney, J., Phillips, E., Jadi, R., Mallal, S., De Silva, A.D., De Silva, A.M., Peters, B., Weiskopf, D. and Sette, A. (2019) Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses. Frontiers in Immunology, 10 .

Hanajiri, R., Sani, G.M., Saunders, D., Hanley, P.J., Chopra, A., Mallal, S.A., Sosnovtsev, S.V., Cohen, J.I., Green, K.Y., Bollard, C.M. and Keller, M.D. (2019) Generation of Norovirus-Specific T cells from Human Donors with extensive Cross-Reactivity to variant sequences: implications for Immunotherapy. The Journal of Infectious Diseases, 221 (4). pp. 578-588.

Hanna, M.G., Badrising, U.A., Benveniste, O., Lloyd, T.E., Needham, M., Chinoy, H., Aoki, M., Machado, P.M., Liang, C., Reardon, K.A., de Visser, M., Ascherman, D.P., Barohn, R.J., Dimachkie, M.M., Miller, J.A.L., Kissel, J.T., Oskarsson, B., Joyce, N.C., Van den Bergh, P., Baets, J., De Bleecker, J.L., Karam, C., David, W.S., Mirabella, M., Nations, S.P., Jung, H. H., Pegoraro, E., Maggi, L., Rodolico, C., Filosto, M., Shaibani, A.I., Sivakumar, K., Goyal, N.A., Mori-Yoshimura, M., Yamashita, S., Suzuki, N., Katsuno, M., Murata, K., Nodera, H., Nishino, I., Romano, C.D., Williams, V.S.L., Vissing, J., Auberson, L.Z., Wu, M., de Vera, A., Papanicolaou, D.A. and Amato, A.A. (2019) Safety and efficacy of intravenous bimagrumab in inclusion body myositis (RESILIENT): a randomised, double-blind, placebo-controlled phase 2b trial. The Lancet Neurology, 18 (9). pp. 834-844.

James, T., Salman, S., Stevenson, B., Bundell, C., Kelly, G., Nolan, D. and John, M. (2019) IgE blockade in autoimmunity: Omalizumab induced remission of bullous pemphigoid. Clinical Immunology, 198 . pp. 54-56.

Joshi, S. and Kermode, A.G. (2019) Harding’s disease: an important MS mimic. BMJ Case Reports, 12 (3).

Karnes, J.H., Miller, M.A., White, K.D., Konvinse, K.C., Pavlos, R.K., Redwood, A.J., Peter, J.G., Lehloenya, R., Mallal, S.A. and Phillips, E.J. (2019) Applications of Immunopharmacogenomics: Predicting, Preventing, and Understanding Immune-Mediated Adverse Drug Reactions. Annual Review of Pharmacology and Toxicology, 59 (1). pp. 463-486.

Konvinse, K.C., Trubiano, J.A., Pavlos, R., James, I., Shaffer, C.M., Bejan, C.A., Schutte, R.J., Ostrov, D.A., Pilkinton, M.A., Rosenbach, M., Zwerner, J.P., Williams, K.B., Bourke, J., Martinez, P., Rwandamuriye, F., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, Redwood, A.J., White, K.D., Mallal, S.A. and Phillips, E.J. (2019) HLA-A*32:01 is strongly associated with vancomycin-induced drug reaction with eosinophilia and systemic symptoms. Journal of Allergy and Clinical Immunology, 144 (1). pp. 183-192.

Krantz, M.S., Stone, C.A., Abreo, A. and Phillips, E.J. (2019) Oral Challenge with Trimethoprim-Sulfamethoxazole in Patients with “Sulfa” Antibiotic Allergy. The Journal of Allergy and Clinical Immunology: In Practice, 8 (2). pp. 757-760.

Lammert, C., McKinnon, E.J., Chalasani, N. and Phillips, E.J. (2019) Novel HLA Class I Alleles Outside the Extended DR3 Haplotype Are Protective against Autoimmune Hepatitis. Clinical and Translational Gastroenterology, 10 (6).

Lindestam Arlehamn, C.S., Pham, J., Alcalay, R.N., Frazier, A., Shorr, E., Carpenter, C., Sidney, J., Dhanwani, R., Agin-Liebes, J., Garretti, F., Amara, A.W., Standaert, D.G., Phillips, E.J., Mallal, S.A., Peters, B., Sulzer, D. and Sette, A. (2019) Widespread Tau-Specific CD4 T Cell Reactivity in the General Population. The Journal of Immunology, 203 (1). pp. 84-92.

Mellough, C.M., Ackerman, M., Thompson, J.A., De Roach, J., McLaren, T., Lamey, T., Akkari, A., Ram, R., Leary, S., Chopra, A., Chen, S.C., Zhang, D., McLenachan, S. and Chen, F.K. (2019) Utilising patient-specific retinal organoids to investigate the role of SNRNP200 variants of unknown significance in severe early onset retinitis pigmentosa. Investigative Ophthalmology and Visual Science, 60 (9). p. 2868.

Mohannak, N., Pattison, G., Hird, K. and Needham, M. (2019) Dysphagia in patients with sporadic inclusion body myositis: Management challenges. International Journal of General Medicine, Volume 12 . pp. 465-474.

Nutalai, R., Gaudieri, S., Jumnainsong, A. and Leelayuwat, C. (2019) Regulation of KIR3DL3 Expression via miRNA. Genes, 10 (8). p. 603.

Pan, R-Y, Chu, M-T, Wang, C-W, Lee, Y-S, Lemonnier, F, Michels, A.W., Schutte, R., Ostrov, D.A., Chen, C-B, Phillips, E.J., Mallal, S.A., Mockenhaupt, M., Bellón, T., Tassaneeyakul, W., White, K.D., Roujeau, J-C, Chung, W-H and Hung, S-L (2019) Identification of drug-specific public TCR driving severe cutaneous adverse reactions. Nature Communications, 10 (1). art. no. 3569.

Paramalingam, S., Counsel, P., Mastaglia, F.L., Keen, H. and Needham, M. (2019) Imaging in the diagnosis of idiopathic inflammatory myopathies; indications and utility. Expert Review of Neurotherapeutics, 19 (2). pp. 173-184.

Peng, L., Zhong, X., Sun, X., Shi, Z., Wang, Y., Chang, Y., Chen, C., Wang, J., Hu, X., Kermode, A.G., Zhou, H., Lu, Z. and Qiu, W. (2019) Whole Exome sequencing reveals the major genetic contributors to Chinese patients with NMOSD seropositive for AQP4-IgG. Multiple Sclerosis Journal, 26 (9). NP76.

Redwood, A.J., Rwandamuriye, F., Chopra, A., Leary, S., Ram, R., McDonnell, W., Konvinse, K., White, K., Pavlos, R., Koelle, D.M., Mallal, S. and Phillips, E. (2019) Single cell transcriptomics reveal polyclonal memory T cell responses in abacavir patch test positive skin. Journal of Allergy and Clinical Immunology, 144 (5). 1413-1416.e7.

Rukasin, C.R.F., Phillips, E.J. and Norton, A.E. (2019) Slow graded reintroduction of oxcarbazepine for delayed maculopapular eruption. Annals of Allergy, Asthma & Immunology, 123 (4). pp. 411-412.

Rwandamuriye, F.X., Chopra, A., Konvinse, K.C., Choo, L., Trubiano, J.A., Shaffer, C.M., Watson, M.ORCID: 0000-0002-6438-9225, Mallal, S.A. and Phillips, E.J. (2019) A rapid allele-specific assay for HLA-A*32:01 to identify patients at risk for vancomycin-induced Drug Reaction with Eosinophilia and systemic symptoms. The Journal of Molecular Diagnostics, 21 (5). pp. 782-789.

Saeed, H.N., Bouchard, C., Shieh, C., Phillips, E. and Chodosh, J. (2019) Highlights from the 2nd Biennial Stevens Johnson syndrome symposium 2019: SJS/TEN from Science to Translation. The Ocular Surface, 18 (3). pp. 483-486.

Sneddon, S., Rive, C.M., Ma, S., Dick, I.M., Allcock, R.J.N., Brown, S.D., Holt, R.A., Watson, M.ORCID: 0000-0002-6438-9225, Leary, S., Lee, Y.C.G., Robinson, B.W.S. and Creaney, J. (2019) Identification of a CD8+ T-cell response to a predicted neoantigen in malignant mesothelioma. OncoImmunology, 9 (1). Art. 1684713.

Somogyi, A.A., Barratt, D.T., Phillips, E.J., Moore, K., Ilyas, F. and Gabb, G.M. (2019) High and variable population prevalence of HLA‐B*56:02 in indigenous Australians and relation to phenytoin‐associated drug reaction with eosinophilia and systemic symptoms. British Journal of Clinical Pharmacology . Early View.

Stevenson, B.R., Thompson, G.A., Watson, M.C., Bundell, C.S., Klinken, E.M., John, M., Lake, F.R. and McLean-Tooke, A.P. (2019) Autoantibodies in interstitial lung diseases. Pathology, 51 (5). pp. 518-523.

Stone, C.A., Choudhary, S., Patterson, M.F., Rukasin, C.R.F., Coleman, D.T., Phillips, E.J. and Commins, S.P. (2019) Tolerance of porcine pancreatic enzymes despite positive skin testing in Alpha-gal allergy. The Journal of Allergy and Clinical Immunology: In Practice . In Press.

Tian, Y., Babor, M., Lane, J., Seumois, G., Liang, S., Goonawardhana, N.D.S., De Silva, A.D., Phillips, E.J., Mallal, S.A., da Silva Antunes, R., Grifoni, A., Vijayanand, P., Weiskopf, D., Peters, B. and Sette, A. (2019) Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles. Journal of Clinical Investigation, 129 (4). pp. 1727-1741.

Trend, S., Jones, A.P., Cha, L., Cooper, M.N., Geldenhuys, S., Fabis-Pedrini, M.J., Carroll, W.M., Cole, J.M., Booth, D.R., Lucas, R.M., French, M.A., Byrne, S.N., Kermode, A.G. and Hart, P.H. (2019) Short-term changes in frequencies of circulating leukocytes associated with narrowband UVB phototherapy in people with clinically isolated syndrome. Scientific Reports, 9 (1).

Triplett, J., Vijayan, S., Prince, R. and Kermode, A. (2019) Dimethyl fumarate–associated transient bone marrow oedema syndrome. Multiple Sclerosis Journal, 25 (6). pp. 876-879.

Triplett, J.D., Khor, T.S. and Kermode, A.G. (2019) Recurrent upper limb neuropathies secondary to an epithelioid haemangioendothelioma – A rare mimic of nerve tumours. Journal of Clinical Neuroscience, 73 . pp. 326-328.

Trubiano, J.A., Chua, K.Y.L., Holmes, N.E., Douglas, A., Mouthoris, E., Goh, M. and Phillips, E.J. (2019) Safety of cephalosporins in penicillin class severe delayed hypersensitivity reactions. The Journal of Allergy and Clinical Immunology: In Practice, 8 (3). 1142-1146.e4.

Trubiano, J.A., Devchand, M. and Phillips, E.J. (2019) Reply. The Journal of Allergy and Clinical Immunology: In Practice, 7 (6). pp. 2095-2096.

Trubiano, J.A., Gordon, C.L., Castellucci, C., Christo, S.N., Park, S.L., Mouhtouris, E., Konvinse, K., Rose, M., Goh, M., Boyd, A.S., Phillips, E.J. and Mackay, L.K. (2019) Analysis of Skin-Resident memory T Cells following drug hypersensitivity reactions. Journal of Investigative Dermatology, 140 (7). P1442-1445.

Trubiano, J.A., Ostrov, D.A. and Phillips, E. (2019) Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis Associated with Carbonic Anhydrase Inhibitors: Epidemiology, Genetics, and Insights into Mechanisms. Journal of Allergy and Clinical Immunology: In Practice, 7 (8). pp. 2854-2856.

Trubiano, J.A., Slavin, M.A., Thursky, K.A., Grayson, M.L. and Phillips, E.J. (2019) Beta-Lactam and sulfonamide allergy testing should be a standard of care in immunocompromised host. The Journal of Allergy and Clinical Immunology: In Practice, 7 (7). pp. 2151-2153.

Wanjalla, C.N., McDonnell, W.J., Barnett, L., Simmons, J.D., Furch, B.D., Lima, M.C., Woodward, B.O., Fan, R., Fei, Y., Baker, P.G., Ram, R., Pilkinton, M.A., Mashayekhi, M., Brown, N.J., Mallal, S.A., Kalams, S.A. and Koethe, J.R. (2019) Adipose tissue in persons with HIV is enriched for CD4+ T effector memory and T effector memory RA+ cells, which show higher CD69 expression and CD57, CX3CR1, GPR56 Co-expression With Increasing Glucose Intolerance. Frontiers in Immunology, 10 .

Woodward, K.J., Stampalia, J., Vanyai, H., Rijhumal, H., Potts, K., Taylor, F., Peverall, J., Grumball, T., Sivamoorthy, S., Alinejad-Rokny, H., Wray, J., Whitehouse, A., Nagarajan, L., Scurlock, J., Afchani, S., Edwards, M., Murch, A., Beilby, J., Baynam, G., Kiraly-Borri, C., McKenzie, F. and Heng, J.I.T. (2019) Atypical nested 22q11.2 duplications between LCR22B and LCR22D are associated with neurodevelopmental phenotypes including autism spectrum disorder with incomplete penetrance. Molecular Genetics & Genomic Medicine, 7 (2).

Zhong, X., Chang, Y., Tan, S., Wang, J., Sun, X., Wu, A., Peng, L., Lau, A.Y., Kermode, A.G. and Qiu, W. (2019) Relapsing optic neuritis and meningoencephalitis in a child: case report of delayed diagnosis of MOG-IgG syndrome. BMC Neurology, 19 (1). Article number 94.

Zhong, X., Zhou, Y., Chang, Y., Wang, J., Shu, Y., Sun, X., Peng, L., Lau, A.Y., Kermode, A.G. and Qiu, W. (2019) Seizure and myelin oligodendrocyte glycoprotein antibody-associated encephalomyelitis in a retrospective cohort of Chinese patients. Frontiers in Neurology, 10 .

Zhong, X.N., Zhou, Y.F., Chang, Y.Y., Wang, J.Q., Shu, Y.Q., Sun, X.B., Peng, L.S., Lau, A.Y., Kermode, A.G. and Qiu, W. (2019) Seizures in Chinese Patients with Myelin Oligodendrocyte Glycoprotein Encephalomyelitis: A retrospective study in single center. Multiple Sclerosis Journal, 25 (3). p. 481.

Zhou, Y., Zhong, X., Shu, Y., Cui, C., Wang, J., Wang, Y., Li, X., Chen, Z., Peng, L., Kermode, A. and Qiu, W. (2019) Clinical course, treatment responses and outcomes in Chinese paediatric neuromyelitis optica spectrum disorder. Multiple Sclerosis and Related Disorders, 28 . pp. 213-220.

2018

Adams, S.N., McKinnon, E. and Phillips, E.J. (2018) Testing strategies for patients labeled as allergic To fluoroquinolones. Journal of Allergy and Clinical Immunology, 141 (2).

Ali, S.B., Jeelall, Y., Pennell, C.E., Hart, R., McLean-Tooke, A. and Lucas, M. (2018) The role of immunological testing and intervention in reproductive medicine: A fertile collaboration? American Journal of Reproductive Immunology, 79 (3). e12784.

Arnold, A., Sommerfield, A., Ramgolam, A., Rueter, K., Muthusamy, S., Noble, V., von Ungern-Sternberg, B.S. and Lucas, M. (2018) The role of skin testing and extended antibiotic courses in assessment of children with penicillin allergy: An Australian experience. Journal of Paediatrics and Child Health, 55 (4). pp. 428-432.

Bilkey, G.A., Baynam, G. and Molster, C. (2018) Changes to the employers' use of genetic information and Non-discrimination for health insurance in the USA: Implications for Australians. Frontiers in Public Health, 6 .

Cha, L., Jones, A.P., Trend, S., Byrne, S.N., Fabis-Pedrini, M.J., Carroll, W.M., Lucas, R.M., Cole, J.M., Booth, D.R., Kermode, A.G. and Hart, P.H. (2018) Tryptophan and arginine catabolic enzymes and regulatory cytokines in clinically isolated syndrome and multiple sclerosis. Clinical & Translational Immunology, 7 (8).

Chang, Y., Shu, Y., Sun, X., Lu, T., Chen, C., Fang, L., He, D., Xu, C., Lu, Z., Hu, X., Peng, L., Kermode, A.G. and Qiu, W. (2018) Study of the placentae of patients with neuromyelitis optica spectrum disorder. Journal of the Neurological Sciences, 387 . pp. 119-123.

Chang, Y., Shu, Y., Sun, X., Xu, C., He, D., Fang, L., Chen, C., Hu, X., Kermode, A. and Qiu, W. (2018) Ectrodactyly in a Chinese patient born to a mother with neuromyelitis optica spectrum disorder. Multiple Sclerosis and Related Disorders, 19 . pp. 70-72.

Chang, Y.Y., Shu, Y.Q., Sun, X.B., Lu, T.T., Chen, C., Fang, L., He, D., Xu, C.F., Lu, Z.Q., Hu, H.Q., Peng, L.S., Kermode, A.G. and Qui, W. (2018) Study of The Placentae of Patients with Neuromyelitis Optica Spectrum Disorder. Multiple Sclerosis Journal, 24 (3). p. 409.

Chang, Y.Y., Shu, Y.Q., Sun, X.B., Xu, C.F., He, D., Fang, L., Chen, C., Hu, X.Q., Kermode, A. and Wei, Q. (2018) Ectrodactyly in A Chinese Patient Born to A Mother with Neuromyelitis Optica Spectrum Disorder. Multiple Sclerosis Journal, 24 (3). pp. 418-419.

Chatterjee, P., Goozee, K., Lim, C.K., James, I., Shen, K., Jacobs, K.R., Sohrabi, H.R.ORCID: 0000-0001-8017-8682, Shah, T., Asih, P.R., Dave, P., ManYan, C., Taddei, K., Lovejoy, D.B., Chung, R., Guillemin, G.J. and Martins, R.N. (2018) Alterations in serum kynurenine pathway metabolites in individuals with high neocortical amyloid-β load: A pilot study. Scientific Reports, 8 . Article number: 8008.

Chee, J., Watson, M.W.ORCID: 0000-0002-6438-9225, Chopra, A., Nguyen, B., Cook, A.M., Creaney, J., Lesterhuis, W.J., Robinson, B.W., Lee, Y.C.G., Nowak, A.K., Lake, R.A. and McDonnell, A.M. (2018) Tumour associated lymphocytes in the pleural effusions of patients with mesothelioma express high levels of inhibitory receptors. BMC Research Notes, 11 (1).

Cook, K.M., Gillon, J., Grisso, A.G., Banerjee, R., Jimenez-Truque, N., Phillips, E.J. and Van Driest, S.L. (2018) Incidence of Nephrotoxicity Among Pediatric Patients Receiving Vancomycin With Either Piperacillin–Tazobactam or Cefepime: A Cohort Study. Journal of the Pediatric Infectious Diseases Society . In Press.

Coote, D., Davis, M.R., Cabrera, M., Needham, M., Laing, N.G. and Nowak, K.J. (2018) Clinical Utility Gene Card for: Becker muscular dystrophy. European Journal of Human Genetics, 26 . pp. 1065-1071.

Derrick, M.I.P., Williams, K.B., Shade, L.M and Phillips, E.J. (2018) A survey of drug allergy training opportunities in the United States. The Journal of Allergy and Clinical Immunology: In Practice, 6 (1). pp. 302-304.

Dhillon, S., McKinnon, E., Wrobel, J., Lavender, M., Lawrence, S., Gabbay, E. and Musk, M. (2018) Lung transplant: the Western Australian experience. Internal Medicine Journal, 48 (11). pp. 1337-1345.

Edkins, A.L., Price, J.T., Pockley, A.G. and Blatch, G.L. (2018) Heat shock proteins as modulators and therapeutic targets of chronic disease: An integrated perspective. Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1738).

Fabis-Pedrini, M.J., Bundell, C., Wee, C-K, Lucas, M., McLean-Tooke, A., Mastaglia, F.L., Carroll, W.M. and Kermode, A.G. (2018) Prevalence of anti-aquaporin 4 antibody in a diagnostic cohort of patients being investigated for possible neuromyelitis optica spectrum disorder in Western Australia. Journal of Neuroimmunology, 324 . pp. 76-80.

Fabis-Pedrini, M.J., Bundell, C., Wee, C.K., Qui, W., Lucas, M., Carroll, W.M. and Kermode, A.G. (2018) Low Prevalence of Anti Aquaporin 4 Antibody in Neuromyelitis Optica Spectrum Disorder and Multiple Sclerosis in Western Australia. Multiple Sclerosis Journal, 24 (3). pp. 404-405.

Fabis-Pedrini, M.J., Carroll, W.M. and Kermode, A.G. (2018) Efficacy and safety of mitoxantrone use in aggressive Multiple Sclerosis (P3.414). Neurology, 90 (15 Supp).

Fabis-Pedrini, M.J., James, I., Seewann, A., Yau, W.Y., van de Bovenkamp, A.A., Sanders, F.R.K., Qiu, W., Burton, J., Mastaglia, F.L., Carroll, W.M. and Kermode, A.G. (2018) Natural history of benign multiple sclerosis: Clinical and HLA correlates in a Western Australian cohort. Journal of the Neurological Sciences, 388 . pp. 12-18.

Fabis-Pedrini, M.J., Jeereddy, S., Carroll, W.M. and Kermode, A.G. (2018) Serum Anti-JCV antibody status in Western Australian patients with multiple sclerosis. Multiple Sclerosis Journal, 25 (3). p. 450.

Ghaly, S., Bliuc, D., Centre, J., Clarke, M.W., Jones, A.P., Trend, S., Kermode, A.G., Neale, R.E. and Hart, P.H. (2018) Vitamin D C3-epimer levels are proportionally higher with oral vitamin D supplementation compared to ultraviolet irradiation of skin in mice but not humans. The Journal of Steroid Biochemistry and Molecular Biology, 186 . pp. 110-116.

Goozee, K., Chatterjee, P., James, I., Shen, K., Sohrabi, H.R.ORCID: 0000-0001-8017-8682, Asih, P.R., Dave, P., ManYan, C., Taddei, K., Ayton, S.J., Garg, M.L., Kwok, J.B., Bush, A.I., Chung, R., Magnussen, J.S. and Martins, R.N. (2018) Elevated plasma ferritin in elderly individuals with high neocortical amyloid-β load. Molecular Psychiatry, 23 (8). pp. 1807-1812.

Grifoni, A., Sidney, J., Carpenter, C., Phillips, E., Mallal, S., Scriba, T.J., Sette, A. and Lindestam Arlehamn, C.S. (2018) Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 159 individuals from the Worcester region of the Western Cape province of South Africa. Human Immunology, 79 (3). pp. 143-144.

Gu, J., Hardy, J., Boo, I., Vietheer, P., McCaffrey, K., Alhammad, Y., Chopra, A., Gaudieri, S., Poumbourios, P., Coulibaly, F., Drummer, H.E. and Diamond, M.S. (2018) Escape of Hepatitis C virus from Epitope I neutralization increases sensitivity of other neutralization epitopes. Journal of Virology, 92 (9). e02066-17.

Hart, P.H., Jones, A.P., Trend, S., Cha, L., Fabis-Pedrini, M.J., Cooper, M.N., d’Este, C., Geldenhuys, S., Carroll, W.M., Byrne, S.N., Booth, D.R., Cole, J.M., Lucas, R.M. and Kermode, A.G. (2018) A randomised, controlled clinical trial of narrowband UVB phototherapy for clinically isolated syndrome: The PhoCIS study. Multiple Sclerosis Journal - Experimental, Translational and Clinical, 4 (2).

Hatleberg, C.I., Ryom, L., El-Sadr, W., Mocroft, A., Reiss, P., De Wit, S., Dabis, F., Pradier, C., D'Arminio Monforte, A., Kovari, H., Law, M., Lundgren, J.D., Sabin, C.A. and Nolan, D. (2018) Gender differences in the use of cardiovascular interventions in HIV-positive persons; the D:A:D Study. Journal of the International AIDS Society, 21 (3).

Huang, K., Li, Q.X., Bi, F.F., Duan, H-Q, Mastaglia, F., Luo, Y.B. and Yang, H. (2018) Comparative immunoprofiling of polymyositis and dermatomyositis muscles. International Journal of Clinical and Experimental Pathology, 11 (8). pp. 3984-3993.

Kamien, B., Ronan, A., Poke, G., Sinnerbrink, I., Baynam, G., Ward, M., Gibson, W.T., Dudding-Byth, T. and Scott, R.J. (2018) A clinical review of generalized overgrowth syndromes in the era of massively parallel sequencing. Molecular Syndromology, 9 (2). pp. 70-82.

Kermode, A. (2018) The Microbiota and MS. Multiple Sclerosis Journal, 24 (3). p. 368.

Kermode, A.G., Hart, P.H., Fabis-Pedrini, M.J., Lucas, R.M., Booth, D.R., Carroll, W.M., Nolan, D., Cole, J.M., Jones, A.P. and Trend, S. (2018) Narrowband UVB Phototherapy for Clinically Isolated Syndrome: Delivering the Benefits of All UVB-Induced Molecules. Multiple Sclerosis Journal, 24 (3). pp. 376-377.

Kermode, A.G. and Triplett, J.D. (2018) Chronic HPV associated lesions associated with Fingolimod use. Multiple Sclerosis Journal, 25 (3). pp. 460-461.

Kermode, A.G., Triplett, J.D., Vijayan, S. and Prince, R. (2018) Transient bone marrow oedema syndrome following Dimethyl Fumarate use. Multiple Sclerosis Journal, 25 (3). p. 458.

Kim, W.B., Worley, B., Holmes, J., Phillips, E.J. and Beecker, J. (2018) Minimal clinically important differences for measures of treatment efficacy in Stevens-Johnson syndrome and toxic epidermal necrolysis. Journal of the American Academy of Dermatology, 79 (6). pp. 1150-1152.

Köhler, S., Carmody, L., Vasilevsky, N., Jacobsen, J.O.B, Danis, D., Gourdine, J-P, Gargano, M., Harris, N.L, Matentzoglu, N., McMurry, J.A., Osumi-Sutherland, D., Cipriani, V., Balhoff, J.P., Conlin, T., Blau, H., Baynam, G., Palmer, R., Gratian, D., Dawkins, H., Segal, M., Jansen, A.C., Muaz, A., Chang, W.H., Bergerson, J., Laulederkind, S.J.F., Yüksel, Z., Beltran, S., Freeman, A.F., Sergouniotis, P.I., Durkin, D., Storm, A.L., Hanauer, M., Brudno, M., Bello, S.M., Sincan, M., Rageth, K., Wheeler, M.T., Oegema, R., Lourghi, H., Della Rocca, M.G., Thompson, R., Castellanos, F., Priest, J., Cunningham-Rundles, C., Hegde, A., Lovering, R.C., Hajek, C., Olry, A., Notarangelo, L., Similuk, M., Zhang, X.A., Gómez-Andrés, D., Lochmüller, H., Dollfus, H., Rosenzweig, S., Marwaha, S., Rath, A., Sullivan, K., Smith, C., Milner, J.D., Leroux, D., Boerkoel, C.F., Klion, A., Carter, M.C., Groza, T., Smedley, D., Haendel, M.A, Mungall, C. and Robinson, P.N. (2018) Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Research, 47 (D1). D1018-D1027.

Li, R., Sun, X., Shu, Y., Wang, Y., Xiao, L., Wang, Z., Hu, X., Kermode, A.G. and Qui, W. (2018) Serum CCL20 and Its Association with SIRT1 Activity in Multiple Sclerosis Patients. Multiple Sclerosis Journal, 24 (3). p. 390.

Lu, T., Shu, Y., Dai, Y., Liu, X., Chang, Y., Huang, Q., Kermode, A.G. and Qiu, W. (2018) B cell depleting therapy for multiple sclerosis overlapping with neuromyelitis optica spectrum disorder. Multiple Sclerosis and Related Disorders, 22 . pp. 83-85.

Lu, T.T., Shu, Y.Q., Dai, Y.Q., Liu, X., Chang, Y.Y., Huang, Q., Kermode, A. and Qui, W. (2018) B Cell Depleting Therapy for Multiple Sclerosis Overlapping with Neuromyelitis Optica Spectrum Disorder. Multiple Sclerosis Journal, 24 (3). p. 420.

Lucas, M., Arnold, A., Sommerfield, A., Trevenen, M., Braconnier, L., Schilling, A., Abass, F., Slevin, L., Knezevic, B., Blyth, C., Murray, K., von Ungern-Sternberg, B. and Rueter, K. (2018) Antibiotic allergy labels in children are associated with adverse clinical outcomes. The Journal of Allergy and Clinical Immunology: In Practice, 7 (3). pp. 975-982.

Lucas, M., Deshpande, P., James, I., Rauch, A., Pfafferott, K., Gaylard, E., Merani, S., Plauzolles, A., Lucas, A., McDonnell, W., Kalams, S., Pilkinton, M., Chastain, C., Barnett, L., Prosser, A., Mallal, S., Fitzmaurice, K., Drummer, H., Ansari, M.A., Pedergnana, V., Barnes, E., John, M., Kelleher, D., Klenerman, P. and Gaudieri, S. (2018) Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome. Scientific Reports, 8 . Article number: 7224.

MacLennan, A.H, Kruer, M.C, Baynam, G., Moreno-De-Luca, A., Wilson, Y.A., Zhu, C., Wintle, R.F. and Gecz, J. (2018) Cerebral palsy and genomics: an international consortium. Developmental Medicine & Child Neurology, 60 (2). pp. 209-210.

Martinez, K.A., Romano-Keeler, J., Zackular, J.P., Moore, D.J., Brucker, R.M., Hooper, C., Meng, S., Brown, N., Mallal, S., Reese, J., Aronoff, D.M., Shin, H., Dominguez-Bello, M.G. and Weitkamp, J-H (2018) Bacterial DNA is present in the fetal intestine and overlaps with that in the placenta in mice. PLoS ONE, 13 (5).

McDonnell, W.J., Koethe, J.R., Mallal, S.A., Pilkinton, M.A., Kirabo, A., Ameka, M.K., Cottam, M.A., Hasty, A.H. and Kennedy, A.J. (2018) High CD8 T-cell receptor clonality and altered CDR3 properties are associated with elevated isolevuglandins in adipose tissue during diet-induced obesity. Diabetes, 67 (11). pp. 2361-2376.

Mitchell, T., McKinnon, E., Ayonrinde, O.T., Adams, L.A., Trinder, D., Chua, A., Newton, R., Strakers, L. and Olynyk, J.K. (2018) Decreased physical working capacity in adolescents with Non-Alcoholic fatty liver disease reflects reduced iron bioavailability. Hepatology, 68 . 1317A-1318A.

Moore, E., Grifoni, A., Weiskopf, D., Schulten, V., Arlehamn, C.S.L., Angelo, M., Pham, J., Leary, S., Sidney, J., Broide, D., Frazier, A., Phillips, E., Mallal, S., Mack, S.J. and Sette, A. (2018) Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA. Human Immunology, 79 (12). pp. 821-822.

Morabito, K.M., Ruckwardt, T.J., Bar-Haim, E., Nair, D., Moin, S.M., Redwood, A.J., Price, D.A. and Graham, B.S. (2018) Memory Inflation Drives Tissue-Resident Memory CD8+ T Cell Maintenance in the Lung After Intranasal Vaccination With Murine Cytomegalovirus. Frontiers in Immunology, 9 .

Norton, A.E., Konvinse, K., Phillips, E.J. and Broyles, A.D. (2018) Antibiotic allergy in pediatrics. Pediatrics, 141 (5).

Nowak, K.J., Bauskis, A., Dawkins, H.J. and Baynam, G. (2018) Incidental inequity. European Journal of Human Genetics, 26 . pp. 616-617.

Pavlos, R., Karnes, J., Trubiano, J., Peters, J. and Phillips, E. (2018) Pharmacogenomics of Drug Allergy. In: Khan, D.A. and Banerji, A., (eds.) Drug Allergy Testing. Elsevier Inc., pp. 39-51.

Philip, M., Pilkinton, M., Ramesh, R., McDonnell, W.J., Gangula, R.D., Camara, S., Chopra, A., Schietinger, A. and Mallal, S.A. (2018) Population dynamics of tumor-specific CD8 T cell differentiation from plastic to fixed dysfunctional states. Journal of immunology, 200 (Supp. 1).

Phillips, E.J. and Mallal, S.A. (2018) Active suppression rather than ignorance: Tolerance to abacavir-induced HLA-B*57:01 peptide repertoire alteration. Journal of Clinical Investigation, 128 (7). pp. 2746-2749.

Phillips, E.J., Sukasem, C., Whirl-Carrillo, M., Müller, D.J., Dunnenberger, H.M., Chantratita, W., Goldspiel, B., Chen, Y-T, Carleton, B.C., George, A.L., Mushiroda, T., Klein, T., Gammal, R.S. and Pirmohamed, M. (2018) Clinical Pharmacogenetics Implementation Consortium Guideline for HLA Genotype and Use of Carbamazepine and Oxcarbazepine: 2017 Update. Clinical Pharmacology & Therapeutics, 103 (4). pp. 574-581.

Redwood, A., Trubiano, J. and Phillips, E. (2018) Prevention and diagnosis of severe T-Cell-Mediated adverse drug reactions: Are we there yet? Journal of Allergy and Clinical Immunology: In Practice, 7 (1). pp. 228-230.

Riley, M., Bakeberg, M., Byrnes, M., Jefferson, A., Ghosh, S., Stell, R., Mastaglia, F.L., Hince, D. and Anderton, R.S. (2018) Demographic and clinical predictors of trait impulsivity in Parkinson’s disease patients. Parkinson's Disease, 2018 . pp. 1-7.

Rueter, K., Ta, B., Bear, N., Lucas, M., Borland, M.L. and Prescott, S.L. (2018) Increased Use of Adrenaline in the Management of Childhood Anaphylaxis Over the Last Decade. The Journal of Allergy and Clinical Immunology: In Practice, 6 (5). pp. 1545-1552.

Rueter, K., Ta, B., Bear, N., Lucas, M., Borland, M.L. and Prescott, S.L. (2018) More adrenaline for anaphylaxis over the last decade? Internal Medicine Journal, 48 (S6). p. 15.

Salman, S., James, T., Stevenson, B., Bundell, C., Kelly, G., Nolan, D. and John, M. (2018) P68: The pathogenic role of autoreactive IGE in bullous pemphigoid: A unique case supporting conclusions from experimental data. Internal Medicine Journal, 48 (S6). pp. 24-25.

Setliff, Ian, McDonnell, W.J., Raju, N., Bombardi, R.G., Murji, A.A., Scheepers, C., Ziki, R., Mynhardt, C., Shepherd, B.E., Mamchak, A.A., Garrett, N., Karim, S.A., Mallal, S.A., Crowe, J.E., Morris, L. and Georgiev, I.S. (2018) Multi-Donor longitudinal antibody repertoire sequencing reveals the existence of public antibody clonotypes in HIV-1 infection. Cell Host & Microbe, 23 (6). pp. 845-854.

Sommerfield, D.L., Sommerfield, A., Schilling, A., Slevin, L., Lucas, M., von Ungern-Sternberg, B.S. and Thomas, M. (2018) Allergy alerts - The incidence of parentally reported allergies in children presenting for general anesthesia. Pediatric Anesthesia, 29 (2). pp. 153-160.

Sooben, S., Thin, L., Picardo, S., Mckinnon, B., Ryan, J. and Wallace, M.H. (2018) A high CRP before surgery and early medical prophylaxis predict postoperative endoscopic Crohn’s disease recurrence. Journal of Crohn's and Colitis, 12 (Supp. 1). S465-S466.

Stone, C.A., Commins, S.P., Choudhary, S., Vethody, C., Heavrin, J.L., Wingerter, J., Hemler, J.A., Babe, K., Phillips, E.J. and Norton, A.E. (2018) Anaphylaxis after vaccination in a pediatric patient: further implicating Alpha-Gal allergy. The Journal of Allergy and Clinical Immunology: In Practice, 7 (1). pp. 322-324.

Stone, C.A., Hemler, J.A., Commins, S.P., Schuyler, A.J., Phillips, E.J., Peebles, R.S. and Fahrenholz, J.M. (2018) Reply. Journal of Allergy and Clinical Immunology, 141 (5). pp. 1957-1958.

Tan, E., Chan, J. and Lucas, M. (2018) Biologic therapy-induced psoriasis: An illustrative case. Internal Medicine Journal, 48 (S6). p. 25.

Tan, E., Thompson, G., Ekstrom, C. and Lucas, M. (2018) Non-immediate heparin and heparinoid cutaneous allergic reactions: a role for fondaparinux. Internal Medicine Journal, 48 (1). pp. 73-77.

Thompson, G., Boan, P., Baumwol, J., Chakera, A., MacQuillan, G., Swaminathan, S., Lavender, M., Flexman, J., James, I. and John, M. (2018) Analysis of the QuantiFERON-CMV assay, CMV viraemia and antiviral treatment following solid organ transplantation in Western Australia. Pathology, 50 (5). pp. 554-561.

Triplett, J., Hee, G., McLean-Tooke, A. and Lucas, M. (2018) Long-term control of laryngeal plasma cell mucositis with systemic immunosuppression. BMJ Case Reports, 2018 .

Triplett, J., Kermode, A.G., Corbett, A. and Reddel, S.W. (2018) Warts and all: Fingolimod and unusual HPV-associated lesions. Multiple Sclerosis Journal . Online First.

Trubiano, J.A, Grayson, M.L., Phillips, E.J., Stewardson, A.J., Thursky, K.A. and Slavin, M.A. (2018) Antibiotic allergy testing improves antibiotic appropriateness in patients with cancer. Journal of Antimicrobial Chemotherapy, 73 . pp. 3209-3211.

Trubiano, J.A., Douglas, A.P., Goh, M., Slavin, M.A. and Phillips, E.J. (2018) The safety of antibiotic skin testing in severe T-cell-mediated hypersensitivity of immunocompetent and immunocompromised hosts. The Journal of Allergy and Clinical Immunology: In Practice, 7 (4). pp. 1341-1343.

Trubiano, J.A., Grayson, M.L., Thursky, K.A., Phillips, E.J. and Slavin, M.A. (2018) How antibiotic allergy labels may be harming our most vulnerable patients. The Medical Journal of Australia, 208 (11). pp. 469-470.

Trubiano, J.A., Strautins, K., Redwood, A.J., Pavlos, R., Konvinse, K.C., Aung, A.K., Slavin, M.A., Thursky, K.A., Grayson, M.L. and Phillips, E.J. (2018) The combined utility of Ex Vivo IFN-γ release Enzyme-Linked ImmunoSpot assay and In Vivo skin testing in patients with Antibiotic-Associated severe cutaneous adverse reactions. The Journal of Allergy and Clinical Immunology: In Practice, 6 (4). pp. 1287-1296.

Vyles, D., Chiu, A., Routes, J., Castells, M., Phillips, E.J., Kibicho, J. and Brousseau, D.C. (2018) Antibiotic use after removal of penicillin allergy label. Pediatrics, 141 (5).

Weiskopf, D., Grifoni, A., Arlehamn, C.S.L., Angelo, M., Leary, S., Sidney, J., Frazier, A., Mack, S.J., Phillips, E., Mallal, S., Cerpas, C., Balmaseda, A., Harris, E. and Sette, A. (2018) Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 339 adults from Managua, Nicaragua. Human Immunology, 79 (1). pp. 1-2.

White, K.D., Abe, R., Ardern-Jones, M., Beachkofsky, T., Bouchard, C., Carleton, B., Chodosh, J., Cibotti, R., Davis, R., Denny, J.C., Dodiuk-Gad, R.P., Ergen, E.N., Goldman, J.L., Holmes, J.H., Hung, S-L, Lacouture, M.E., Lehloenya, R.J., Mallal, S., Manolio, T.A., Micheletti, R.G., Mitchell, C.M., Mockenhaupt, M., Ostrov, D.A., Pavlos, R., Pirmohamed, M., Pope, E., Redwood, A., Rosenbach, M., Rosenblum, M.D., Roujeau, J-C, Saavedra, A.P., Saeed, H.N., Struewing, J.P., Sueki, H., Sukasem, C., Sung, C., Trubiano, J.A., Weintraub, J., Wheatley, L.M., Williams, K.B., Worley, B., Chung, W-H, Shear, N.H. and Phillips, E.J. (2018) SJS/TEN 2017: Building multidisciplinary networks to drive science and translation. The Journal of Allergy and Clinical Immunology: In Practice, 6 (1). pp. 38-69.

White, K.D., Konvinse, K.C., Pilkinton, M.A., Redwood, A., Trubiano, J.A., Peter, J.G., Lehloenya, R., Chung, W-H, Hung, S-L, Pan, R-Y, Chopra, A., Barnett, L., Gangula, R., Mallal, S.A. and Phillips, E.J. (2018) Single cell approaches to define the pathogenic immune cells that mediate drug hypersensitivity. Journal of Allergy and Clinical Immunology, 141 (2). AB88.

Zahedi, A.ORCID: 0000-0002-0165-3797, Gofton, A., Greay, T., Monis, P., Oskam, C., Ball, A., Bath, A., Watkinson, A., Robertson, I.ORCID: 0000-0002-4255-4752 and Ryan, U.ORCID: 0000-0003-2710-9324 (2018) Metagenomic analysis of Cryptosporidium species and genotypes in wastewater treatment plants. In: 14th International Congress of Parasitology (ICOPA) 2018, 19 - 24 August 2018, Daegu, South Korea

Zahedi, A.ORCID: 0000-0002-0165-3797, Gofton, A., Greay, T., Monis, P., Oskam, C., Ball, A., Bath, A., Watkinson, A., Robertson, I.ORCID: 0000-0002-4255-4752 and Ryan, U.ORCID: 0000-0003-2710-9324 (2018) Profiling the diversity of Cryptosporidium species and genotypes in wastewater treatment plants in Australia using next generation sequencing. In: The West Coast Microbiome Network (WCMN). Annual Symposium - Global Microbiome 2018, 17th August 2018, Harry Perkins Institute, Nedlands, Western Australia.

Zhong, X., Chang, Y., Tan, S., Wang, J., Sun, X., Wu, A., Peng, L., Lau, A.Y., Kermode, A.G. and Qiu, W. (2018) Relapsing optic neuritis and meningoencephalitis in a Child-Delayed diagnosis of MOG-IgG syndrome. Multiple Sclerosis Journal, 25 (3). p. 490.

Zhou, Y., Jia, X., Yang, H., Chen, C., Sun, X., Peng, L., Kermode, A.G. and Qiu, W. (2018) Myelin oligodendrocyte glycoprotein antibody-associated demyelination: comparison between onset phenotypes. European Journal of Neurology, 26 (1). pp. 175-183.

da Silva Antunes, R., Pham, J., McMurtrey, C., Hildebrand, W.H., Phillips, E., Mallal, S., Sidney, J., Busse, P., Peters, B., Schulten, V. and Sette, A. (2018) Urinary peptides as a novel source of T Cell allergen epitopes. Frontiers in Immunology, 9 .

2017

Abana, C.O., Pilkinton, M.A., Gaudieri, S., Chopra, A., McDonnell, W.J., Wanjalla, C., Barnett, L., Gangula, R., Hager, C., Jung, D.K., Engelhardt, B.G., Jagasia, M.H., Klenerman, P., Phillips, E.J., Koelle, D.M., Kalams, S.A. and Mallal, S.A. (2017) Cytomegalovirus (CMV) Epitope–Specific CD4 + T Cells Are Inflated in HIV + CMV + Subjects. The Journal of Immunology, 199 (9). pp. 3187-3201.

Adland, E., Hill, M., Lavandier, N., Csala, A., Edwards, A., Chen, F., Radkowski, M., Kowalska, J.D., Paraskevis, D., Hatzakis, A., Valenzuela-Ponce, H., Pfafferott, K., Williams, I., Pellegrino, P., Borrow, P., Mori, M., Rockstroh, J., Prado, J.G., Mothe, B., Dalmau, J., Martinez-Picado, J., Tudor-Williams, G., Frater, J., Stryhn, A., Buus, S., Reyes Teran, G., Mallal, S., John, M., Buchbinder, S., Kirk, G., Martin, J., Michael, N., Fellay, J., Deeks, S., Walker, B.ORCID: 0000-0002-8506-6740, Avila-Rios, S., Cole, D., Brander, C., Carrington, M. and Goulder, P. (2017) Differential immunodominance hierarchy OF CD8+ T cell responses in HLA-B*27:05 AND B*27:02-mediated control of HIV-1 infection. Journal of Virology, 82 (4). e01685-e016817.

Adler, N.R., Aung, A.K., Ergen, E.N., Trubiano, J., Goh, M.S.Y. and Phillips, E.J. (2017) Recent advances in the understanding of severe cutaneous adverse reactions. British Journal of Dermatology, 177 (5). pp. 1234-1247.

Almeida, C., van Miert, P., O'Driscoll, K., Zoet, Y.M., Chopra, A., Watson, M.ORCID: 0000-0002-6438-9225, de Santis, D., Witt, C., John, M., Claas, F.H.J. and D'Orsogna, L.J. (2017) Stimulation of HIV-specific T cell clonotypes using allogeneic HLA. Cellular Immunology, 316 . pp. 32-40.

Altmüller, F., Lissewski, C., Bertola, D., Flex, E., Stark, Z., Spranger, S., Baynam, G., Buscarilli, M., Dyack, S., Gillis, J., Yntema, H.G., Pantaleoni, F., van Loon, R.L.E., MacKay, S., Mina, K., Schanze, I., Tan, T.Y., Walsh, M., White, S.M., Niewisch, M.R., García-Miñaúr, S., Plaza, D., Ahmadian, M.R., Cavé, H., Tartaglia, M. and Zenker, M. (2017) Genotype and phenotype spectrum of NRAS germline variants. European Journal of Human Genetics, 25 (7). pp. 823-831.

Anderton, R.S., Hill, L.R., Morris, R., Mastaglia, F.L., Greene, W. and Boulos, S. (2017) Lack of evidence for decreased protein stability in the 2397 (Met) haplotype of the leucine rich repeat kinase 2 protein implicated in Parkinson’s disease. Advances in Parkinson's Disease, 06 (04). pp. 113-123.

Arlehamn, C.S.L., Copin, R., Leary, S., Mack, S.J., Phillips, E., Mallal, S., Sette, A., Blatner, G., Siefers, H. and Ernst, J.D. (2017) Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 100 Luo infants from the Boro area of Nyanza Province, Kenya. Human Immunology, 78 (4). pp. 325-326.

Au, P.Y.B., Huang, L., Broley, S., Gallagher, L., Creede, E., Lahey, D., Ordorica, S., Mina, K., Boycott, K.M., Baynam, G. and Dyment, D.A. (2017) Two females with mutations in USP9X highlight the variable expressivity of the intellectual disability syndrome. European Journal of Medical Genetics, 60 (7). pp. 359-364.

Baynam, G., Broley, S., Bauskis, A., Pachter, N., McKenzie, F., Townshend, S., Slee, J., Kiraly-Borri, C., Vasudevan, A., Hawkins, A., Schofield, L., Helmholz, P., Palmer, R., Kung, S., Walker, C.E., Molster, C., Lewis, B., Mina, K., Beilby, J., Pathak, G., Poulton, C., Groza, T., Zankl, A., Roscioli, T., Dinger, M.E., Mattick, J.S., Gahl, W., Groft, S., Tifft, C., Taruscio, D., Lasko, P., Kosaki, K., Wilhelm, H., Melegh, B., Carapetis, J., Jana, S., Chaney, G., Johns, A., Owen, P.W., Daly, F., Weeramanthri, T., Dawkins, H. and Goldblatt, J. (2017) Initiating an undiagnosed diseases program in the Western Australian public health system. Orphanet Journal of Rare Diseases, 12 (1).

Carroll, G.J., Makin, K., Garnsey, M., Bulsara, M., Carroll, B.V., Curtin, S.M., Allan, E.M., McLean-Tooke, A., Bundell, C., Kemp, M.L., Deshpande, P., Ihdayhid, D., Coleman, S., Easter, T., Triplett, J., Disteldorf, T., Marsden, C.H. and Lucas, M. (2017) Undetectable mannose binding lectin and corticosteroids increase serious infection risk in rheumatoid arthritis. The Journal of Allergy and Clinical Immunology: In Practice, 5 (6). pp. 1609-1616.

Coutinho, C.M.L.M., Coutinho-Silva, R., Zinkevich, V., Pearce, C.B., Ojcius, D.M. and Beech, I. (2017) Sulphate-reducing bacteria from ulcerative colitis patients induce apoptosis of gastrointestinal epithelial cells. Microbial Pathogenesis, 112 . pp. 126-134.

Cull, G., Hall, D., Fabis-Pedrini, M.J., Carroll, W.M., Forster, L., Robins, F., Ghassemifar, R., Crosbie, C., Walters, S., James, I., Augustson, B. and Kermode, A.G. (2017) Lymphocyte reconstitution following autologous stem cell transplantation for progressive MS. Multiple Sclerosis Journal – Experimental, Translational and Clinical, 3 (1). pp. 1-9.

Delpoux, A., Michelini, R.H., Verma, S., Lai, C.-Y., Omilusik, K.D., Utzschneider, D.T., Redwood, A.J., Goldrath, A.W., Benedict, C.A. and Hedrick, S.M. (2017) Continuous activity of Foxo1 is required to prevent anergy and maintain the memory state of CD8+T cells. The Journal of Experimental Medicine, 215 (2). pp. 575-594.

Evans, T., Jefferson, A., Byrnes, M., Walters, S., Ghosh, S., Mastaglia, F.L., Power, B. and Anderton, R.S. (2017) Extended “Timed Up and Go” assessment as a clinical indicator of cognitive state in Parkinson's disease. Journal of the Neurological Sciences, 375 . pp. 86-91.

Fewings, N., Gatt, P.N., McKay, F.C., Parnell, G.P., Schibeci, S.D., Edwards, J., Basuki, M.A., Goldinger, A., Fabis-Pedrini, M.J., Kermode, A.G., Manrique, C.P., McCauley, J.L., Nickles, D., Baranzini, S.E., Burke, T., Vucic, S., Stewart, G.J. and Booth, D.R. (2017) Data characterizing the ZMIZ1 molecular phenotype of multiple sclerosis. Data in Brief, 11 . pp. 364-370.

Fewings, N.L., Gatt, P.N., McKay, F.C., Parnell, G.P., Schibeci, S.D., Edwards, J., Basuki, M.A., Goldinger, A., Fabis-Pedrini, M.J., Kermode, A.G., Manrique, C.P., McCauley, J.L., Nickles, D., Baranzini, S.E., Burke, T., Vucic, S., Stewart, G.J. and Booth, D.R. (2017) The autoimmune risk gene ZMIZ1 is a vitamin D responsive marker of a molecular phenotype of multiple sclerosis. Journal of Autoimmunity, 78 . pp. 57-69.

Fonceca, A.M., Chopra, A., Levy, A., Noakes, P.S., Poh, M.W.-P., Bear, N.L., Prescott, S. and Everard, M.L. (2017) Infective respiratory syncytial virus is present in human cord blood samples and most prevalent during winter months. PLOS ONE, 12 (4). e0173738.

Garon, S.L., Pavlos, R.K., White, K.D., Brown, N.J., Stone, C.A. and Phillips, E.J. (2017) Pharmacogenomics of off-target adverse drug reactions. British Journal of Clinical Pharmacology, 83 (9). pp. 1896-1911.

Gatanaga, H., Brumme, Z.L., Adland, E., Reyes-Teran, G., Avila-Rios, S., Mejía-Villatoro, C.R., Hayashida, T., Chikata, T., Van Tran, G., Van Nguyen, K., Meza, R.I., Palou, E.Y., Valenzuela-Ponce, H., Pascale, J.M., Porras-Cortés, G., Manzanero, M., Lee, G.Q., Martin, J.N., Carrington, M.N., John, M., Mallal, S., Poon, A.F.Y., Goulder, P., Takiguchi, M. and Oka, S. (2017) Potential for immune-driven viral polymorphisms to compromise antiretroviral-based preexposure prophylaxis for prevention of HIV-1 infection. AIDS, 31 (14). pp. 1935-1943.

Gaudieri, S. and John, M. (2017) Evolution of the Human Leukocyte Antigen System. In: Tibayrenc, M. and Ayala, F.J., (eds.) On Human Nature. Elsevier Inc., pp. 211-219.

Gaudieri, S. and Lucas, M. (2017) Innate and adaptive immunity shape circulating HCV strains. Nature Genetics, 49 (5). pp. 657-658.

Goozee, K., Chatterjee, P., James, I., Shen, K., Sohrabi, H.R.ORCID: 0000-0001-8017-8682, Asih, P.R., Dave, P., Ball, B., ManYan, C., Taddei, K., Chung, R., Garg, M.L. and Martins, R.N. (2017) Alterations in erythrocyte fatty acid composition in preclinical Alzheimer’s disease. Scientific Reports, 7 . Article number: 676.

Grifoni, A., Angelo, M., Sidney, J., Paul, S., Peters, Bjoern, de Silva, A.D., Phillips, E., Mallal, S., Diehl, S.A., Botten, J., Boyson, J., Kirkpatrick, B.D., Whitehead, S.S., Durbin, A.P., Sette, A., Weiskopf, D. and García-Sastre, A. (2017) Patterns of Cellular Immunity Associated with Experimental Infection with rDEN2Δ30 (Tonga/74) Support Its Suitability as a Human Dengue Virus Challenge Strain. Journal of Virology, 91 (8).

Grifoni, A., Angelo, M.A., Lopez, B., O’Rourke, P.H., Sidney, J., Cerpas, C., Balmaseda, A., Silveira, C.G.T., Maestri, A., Costa, P.R., Durbin, A.P., Diehl, S.A., Phillips, E., Mallal, S., De Silva, A.D., Nchinda, G., Nkenfou, C., Collins, M.H., de Silva, A.M., Lim, M.Q., Macary, P.A., Tatullo, F., Solomon, T., Satchidanandam, V., Desai, A., Ravi, V., Coloma, J., Turtle, L., Rivino, L., Kallas, E.G., Peters, B., Harris, E., Sette, A. and Weiskopf, D. (2017) Global assessment of dengue Virus-Specific CD4+ T cell responses in Dengue-Endemic areas. Frontiers in Immunology, 8 .

Grifoni, A., Pham, J., Sidney, J., O'Rourke, P.H., Paul, S., Peters, B., Martini, S.R., de Silva, A.D., Ricciardi, M.J., Magnani, D.M., Silveira, C.G.T., Maestri, A., Costa, P.R., de-Oliveira-Pinto, L.M., de Azeredo, E.L., Damasco, P.V., Phillips, E., Mallal, S., de Silva, A.M., Collins, M., Durbin, A., Diehl, S.A., Cerpas, C., Balmaseda, A., Kuan, G., Coloma, J., Harris, E., Crowe, J.E., Stone, M., Norris, P.J., Busch, M., Vivanco-Cid, H., Cox, J., Graham, B.S., Ledgerwood, J.E., Turtle, L., Solomon, T., Kallas, E.G., Watkins, D.I., Weiskopf, D., Sette, A. and Dermody, T.S. (2017) Prior dengue virus exposure shapes T Cell immunity to Zika Virus in humans. Journal of Virology, 91 (24).

Grifoni, A., Weiskopf, D., Lindestam Arlehamn, C.S., Angelo, M., Leary, S., Sidney, J., Frazier, A., Phillips, E., Mallal, S., Mack, S.J., Tippalagama, R., Goonewardana, S., Premawansa, S., Premawansa, G., Wijewickrama, A., De Silva, A.D. and Sette, A. (2017) Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka. Human Immunology, 79 (2). pp. 87-88.

Gupta, V.B., Hone, E., Pedrini, S., Doecke, J., O'Bryant, S., James, I., Bush, A.I., Rowe, C.C., Villemagne, V.L., Ames, D, Masters, C.L. and Martins, R.N. (2017) Altered levels of blood proteins in Alzheimer's disease longitudinal study: Results from Australian Imaging Biomarkers Lifestyle Study of Ageing cohort. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 8 . pp. 60-72.

Gutteridge, D.H. and Mastaglia, F.L. (2017) Recognition of giant cell arteritis in patients with polymyalgia rheumatica who have a stroke: A cautionary tale. Internal Medicine Journal, 47 (10). pp. 1199-1201.

Hart, P.H., Lucas, R.M., Booth, D.R., Carroll, W.M., Nolan, D., Cole, J.M., Jones, A.P. and Kermode, A.G. (2017) Narrowband UVB phototherapy for clinically isolated syndrome: A trial to deliver the benefits of Vitamin D and other UVB-Induced molecules. Frontiers in Immunology, 8 .

Huang, Y., Wang, Y., Zhou, Y., Huang, Q., Sun, X., Chen, C., Fang, L., Long, Y., Yang, H., Wang, H., Li, C., Lu, Z., Hu, X., Kermode, A.G. and Qiu, W. (2017) Pregnancy in neuromyelitis optica spectrum disorder: A multicenter study from South China. Journal of the Neurological Sciences, 372 . pp. 152-156.

John, M., Gaudieri, S. and Mallal, S. (2017) Immunogenetics and vaccination. In: Modjarrad, K. and Koff, W.C., (eds.) Human Vaccines: Emerging Technologies in Design and Development. Academic Press.

Jones, A.P., Trend, S., Byrne, S.N., Fabis-Pedrini, M.J., Geldenhuys, S., Nolan, D., Booth, D.R., Carroll, W.M., Lucas, R.M., Kermode, A.G. and Hart, P.H. (2017) Altered regulatory T-cell fractions and Helios expression in clinically isolated syndrome: Clues to the development of multiple sclerosis. Clinical & Translational Immunology, 6 (5).

Kalincik, T., Jokubaitis, V., Spelman, T., Horakova, D., Havrdova, E., Trojano, M., Lechner-Scott, J., Lugaresi, A., Prat, A., Girard, M., Duquette, P., Grammond, P., Solaro, C., Grand’Maison, F., Hupperts, R., Prevost, J., Sola, P., Ferraro, D., Terzi, M., Butler, E., Slee, M., Kermode, A., Fabis-Pedrini, M., McCombe, P., Barnett, M., Shaw, C., Hodgkinson, S. and Butzkueven, H. (2017) Cladribine versus fingolimod, natalizumab and interferon β for multiple sclerosis. Multiple Sclerosis Journal, 24 (12). pp. 1617-1626.

Karnes, J.H., Bastarache, L., Shaffer, C.M., Gaudieri, S., Xu, Y., Glazer, A.M., Mosley, J.D., Zhao, S., Raychaudhuri, S., Mallal, S., Ye, Z., Mayer, J.G., Brilliant, M.H., Hebbring, S.J., Roden, D.M., Phillips, E.J. and Denny, J.C. (2017) Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants. Science Translational Medicine, 9 (389). eaai8708.

Karnes, J.H., Shaffer, C.M., Bastarache, L., Gaudieri, S., Glazer, A.M., Steiner, H.E., Mosley, J.D., Mallal, S., Denny, J.C., Phillips, E.J. and Roden, D.M. (2017) Comparison of HLA allelic imputation programs. PLoS ONE, 12 (2).

Karnes, J.H., Shaffer, C.M., Cronin, R., Bastarache, L., Gaudieri, S., James, I., Pavlos, R., Steiner, H., Mosley, J.D., Mallal, S., Denny, J.C., Phillips, E.J. and Roden, D.M. (2017) Influence of human leukocyte antigen (HLA) alleles and killer cell immunoglobulin-like receptors (KIR) types on heparin-induced thrombocytopenia (HIT). Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, 37 (9). pp. 1164-1171.

Kermode, A.G., Hart, P., Lucas, R., Booth, D., Carroll, W., Nolan, D., Cole, J., Jones, A. and Trend, S. (2017) Narrowband UVB phototherapy for clinically isolated syndrome: Delivering the benefits of all UVB-induced molecules. Journal of the Neurological Sciences, 381 (Supp.). p. 446.

Koethe, J.R., McDonnell, W., Kennedy, A., Abana, C.O., Pilkinton, M., Setliff, I., Georgiev, I., Barnett, L., Hager, C.C., Smith, R., Kalams, S.A., Hasty, A. and Mallal, S. (2017) Adipose tissue is enriched for activated and Late-differentiated CD8+ T cells, and shows distinct CD8+ receptor usage, compared to blood in HIV-infected persons. JAIDS Journal of Acquired Immune Deficiency Syndromes, 77 (2). e14-e21.

Li, R., Sun, X., Shu, Y., Wang, Yuge, Xiao, Li, Wang, Z., Hu, X., Kermode, A.G. and Qiu, W. (2017) Serum CCL20 and its association with SIRT1 activity in multiple sclerosis patients. Journal of Neuroimmunology, 313 . pp. 56-60.

Lucas, M., Kallies, A. and Klenerman, P. (2017) The immune system of the liver: 50 years of strangeness. Clinical & Translational Immunology, 6 (12). e164.

Mahurkar, S., Moldovan, M., Suppiah, V., Sorosina, M., Clarelli, F., Liberatore, G., Malhotra, S., Montalban, X., Antigüedad, A., Krupa, M., Jokubaitis, V.G., McKay, F.C., Gatt, P.N., Fabis-Pedrini, M.J., Martinelli, V., Comi, G., Lechner-Scott, J., Kermode, A.G., Slee, M., Taylor, B.V., Vandenbroeck, K., Comabella, M., Boneschi, F.M. and King, C. (2017) Response to interferon-beta treatment in multiple sclerosis patients: A genome-wide association study. The Pharmacogenomics Journal, 17 (4). pp. 312-318.

Mallal, S. (2017) What HIV has taught about the interactions between biology, culture, and other evolving systems. In: Tibayrenc, M. and Ayala, F.J., (eds.) On Human Nature. Elsevier Inc., pp. 771-776.

Manolio, T.A., Hutter, C.M., Avigan, M., Cibotti, R., Davis, R.L., Denny, J.C., Grenade, L.L., Wheatley, L.M., Carrington, M.N., Chantratita, W., Chung, W.H., Dalton, A.D., Hung, S.I., Lee, M.T.M., Leeder, J.S., Lertora, J.J.L., Mahasirimongkol, S., McLeod, H.L., Mockenhaupt, M., Pacanowski, Michael, Phillips, E.J., Pinheiro, S., Pirmohamed, M., Sung, C., Suwankesawong, W., Trepanier, L.A., Tumminia, S.J., Veenstra, D., Yuliwulandari, R. and Shear, N.H. (2017) Research directions in genetic predispositions to Stevens-Johnson Syndrome / Toxic Epidermal Necrolysis. Clinical Pharmacology & Therapeutics, 103 (3). pp. 390-394.

McGovern, A.M., Androga, G.O., Knight, D.R.ORCID: 0000-0002-9480-4733, Watson, M.W.ORCID: 0000-0002-6438-9225, Elliott, B., Foster, N.F., Chang, B.J. and Riley, T.V. (2017) Prevalence of binary toxin positive Clostridium difficile in diarrhoeal humans in the absence of epidemic ribotype 027. PLoS ONE, 12 (11). e0187658.

Merani, S., Lucas, M., Deshpande, P., Pfafferott, K., Chopra, A., Cooper, D., Leary, S., Luciani, F. and Gaudieri, S. (2017) Influence of transmitted virus on the host's immune response: A case study. Viral Immunology, 30 (7).

Molster, C.M., Lister, K., Metternick-Jones, S., Baynam, G., Clarke, A.J., Straub, V., Dawkins, H.J.S. and Laing, N. (2017) Outcomes of an International Workshop on Preconception Expanded Carrier Screening: Some Considerations for Governments. Frontiers in Public Health, 5 . Article 25.

Needham, M. and Mastaglia, F.L. (2017) Advances in inclusion body myositis: genetics, pathogenesis and clinical aspects. Expert Opinion on Orphan Drugs, 5 (5). pp. 431-443.

Noto, J.M., Chopra, A., Loh, J., Romero-Gallo, J., Piazuelo, M.B., Watson, M.W.ORCID: 0000-0002-6438-9225, Leary, S., Beckett, A., Cover, T., Mallal, S., Israel, D. and Peek, R.M. (2017) Carcinogenic host microenvironments target and modify key pathogenic loci within helicobacter pylori. Gastroenterology, 152 (5). S666.

Noto, J.M., Chopra, A., Loh, J.T., Romero-Gallo, J., Piazuelo, M.B., Watson, M.ORCID: 0000-0002-6438-9225, Leary, S., Beckett, A.C., Wilson, K.T., Cover, T.L., Mallal, S., Israel, D.A. and Peek, R.M. (2017) Pan-genomic analyses identify key Helicobacter pylori pathogenic loci modified by carcinogenic host microenvironments. Gut, 67 (10). pp. 1793-1804.

Pavlos, R., McKinnon, E.J., Ostrov, D.A., Peters, B., Buus, S., Koelle, D., Chopra, A., Schutte, R., Rive, C., Redwood, A., Restrepo, S., Bracey, A., Kaever, T., Myers, P., Speers, E., Malaker, S.A., Shabanowitz, J., Jing, Y., Gaudieri, S., Hunt, D.F., Carrington, M., Haas, D.W., Mallal, S. and Phillips, E.J. (2017) Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles. Scientific Reports, 7 (1).

Pavlos, R., Redwood, A. and Phillips, E. (2017) AdDRESSing T-cell responses to antituberculous drugs. British Journal of Dermatology, 176 (2). pp. 292-293.

Pedrini, S., Gupta, V.B., Hone, E., Doecke, J., O’Bryant, S., James, I., Bush, A.I., Rowe, C.C., Villemagne, V.L., Ames, D., Masters, C.L. and Martins, R.N. (2017) A blood-based biomarker panel indicates IL-10 and IL-12/23p40 are jointly associated as predictors of β-amyloid load in an AD cohort. Scientific Reports, 7 (1).

Peter, J.G., Lehloenya, R., Dlamini, S., Risma, K., White, K.D., Konvinse, K.C. and Phillips, E.J. (2017) Severe Delayed Cutaneous and Systemic Reactions to Drugs: A Global Perspective on the Science and Art of Current Practice. The Journal of Allergy and Clinical Immunology: In Practice, 5 (3). pp. 547-563.

Pina-Salazar, E-Z, Urita, K., Hayashi, T., Futamura, R., Vallejos-Burgos, F., Włoch, J., Kowalczyk, P., Wiśniewski, M., Sakai, T., Moriguchi, I., Terzyk, A.P., Osawa, E. and Kaneko, K. (2017) Water adsorption property of hierarchically nanoporous detonation nanodiamonds. Langmuir, 33 (42). pp. 11180-11188.

Poulton, C., Baynam, G., Yates, C., Alinejad-Rokny, H., Williams, S., Wright, H., Woodward, K.J., Sivamoorthy, S., Peverall, J., Shipman, P., Ravine, D., Beilby, J. and Heng, J.I-T (2017) A review of structural brain abnormalities in Pallister-Killian syndrome. Molecular Genetics & Genomic Medicine, 6 (1). pp. 92-98.

Redwood, A.J., Pavlos, R.K., White, K.D. and Phillips, E.J. (2017) HLAs: Key regulators of T-cell-mediated drug hypersensitivity. HLA, 91 (1). pp. 3-16.

Secombe, C.J., Tan, R.H.H., Perera, D.I., Byrne, D.P.ORCID: 0000-0003-2910-9133, Watts, S.P. and Wearn, J.G. (2017) The effect of geographic location on circannual adrenocorticotropic hormone plasma concentrations in horses in Australia. Journal of Veterinary Internal Medicine, 31 (5). pp. 1533-1540.

Sheahan, Jordana (2017) Defining latent EBV load in B lymphocytes: Application to multiple sclerosis. Honours thesis, Murdoch University.

Shu, Y., Li, R., Qiu, W., Chang, Y., Sun, X., Fang, L., Chen, C., Yang, Y., Lu, Z., Hu, X. and Kermode, A.G. (2017) Association of serum gamma-glutamyltransferase and C-reactive proteins with neuromyelitis optica and multiple sclerosis. Multiple Sclerosis and Related Disorders, 18 . pp. 65-70.

Somogyi, A.A. and Phillips, E. (2017) Genomic testing as a tool to optimise drug therapy. Australian Prescriber, 40 (3). pp. 101-104.

Soto-Nava, M., Avila-Rios, S., Valenzuela-Ponce, H., Garcia-Morales, C., Carlson, J.M., Tapia-Trejo, D., Garrido-Rodriguez, D., Alva-Hernández, S.N., García-Tellez, T.A., Murakami-Ogasawara, A., Mallal, S.A., John, M., Brockman, M.A., Brumme, C.J., Brumme, Z.L., Reyes-Teran, G. and Silvestri, G. (2017) Weaker HLA footprints on HIV in the unique and highly genetically admixed host population of Mexico. Journal of Virology, 92 (2).

Stewart, T., Spelman, T., Havrdova, E., Horakova, D., Trojano, M., Izquierdo, G., Duquette, P., Girard, M., Prat, A., Lugaresi, A., Grand’Maison, F., Grammond, P., Sola, P., Shaygannejad, V., Hupperts, R., Alroughani, R., Oreja-Guevara, C., Pucci, E., Boz, C., Lechner-Scott, J., Bergamaschi, R., van Pesch, V., Iuliano, G., Ramo, C., Taylor, B., Slee, M., Spitaleri, D., Granella, F., Verheul, F., McCombe, P., Hodgkinson, S., Amato, M.P., Vucic, S., Gray, O., Cristiano, E., Barnett, M., Sanchez Menoyo, J.L., van Munster, E., Saladino, M.L., Olascoaga, J., Prevost, J., Deri, N., Shaw, C., Singhal, B., Moore, F., Rózsa, C., Shuey, N., Skibina, O., Kister, I., Petkovska-Boskova, T., Ampapa, R., Kermode, A., Butzkueven, H., Jokubaitis, V. and Kalincik, T. (2017) Contribution of different relapse phenotypes to disability in multiple sclerosis. Multiple Sclerosis Journal, 23 (2). pp. 266-276.

Styles, C.E., Seed, C.R., Hoad, V.C., Gaudieri, S. and Keller, A.J. (2017) Reconsideration of blood donation testing strategy for human T-cell lymphotropic virus in Australia. Vox Sanguinis, 112 (8). pp. 723-732.

Sulzer, D., Alcalay, R.N., Garretti, F., Cote, L., Kanter, E., Agin-Liebes, J., Liong, C., McMurtrey, C., Hildebrand, W.H., Mao, X., Dawson, V.L., Dawson, T.M., Oseroff, C., Pham, J., Sidney, J., Dillon, M.B., Carpenter, C., Weiskopf, D., Phillips, E., Mallal, S., Peters, B., Frazier, A., Lindestam Arlehamn, C.S. and Sette, A. (2017) T cells from patients with Parkinson’s disease recognize α-synuclein peptides. Nature, 546 (7660). pp. 656-661.

Symons, J., Chopra, A., Malantinkova, E., De Spiegelaere, W., Leary, S., Cooper, D., Abana, C.O., Rhodes, A., Rezaei, S.D., Vandekerckhove, L., Mallal, S., Lewin, S.R. and Cameron, P.U. (2017) HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology, 14 (1).

Symons, J., Chopra, A., Malatinkova, E., De Spiegelaere, W., Leary, S., Cooper, D., Abana, C.O., Rhodes, A., Rezaei, S.D., Vandekerckhove, L., Mallal, S., Lewin, S.R. and Cameron, P.U. (2017) Erratum to: HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology, 14 (1).

Tay, J., Lui, W., Tian, J.ORCID: 0000-0001-9887-7211, Hughes, Q., Tiao, J. and Baker, R. (2017) Evidence for direct and indirect modulation of haemostatic factors by miR-494. In: International Society on Thrombosis and Haemostasis 2017, 8-13 July 2017, Berlin, Germany.

Tay, J.W., James, I., Hughes, Q.W., Tiao, J.Y. and Baker, R.I. (2017) Identification of reference miRNAs in plasma useful for the study of oestrogen-responsive miRNAs associated with acquired Protein S deficiency in pregnancy. BMC Research Notes, 10 (1).

Thomas, M., Hopkins, C., Duffy, E., Lee, D., Loulergue, P., Ripamonti, D., Ostrov, D.A. and Phillips, E. (2017) Association of the HLA-B*53:01 Allele With Drug Reaction With Eosinophilia and Systemic Symptoms (DRESS) Syndrome During Treatment of HIV Infection With Raltegravir. Clinical Infectious Diseases, 64 (9). pp. 1198-1203.

Trend, S., Jones, A., Geldenhuys, S., Byrne, S., Fabis-Pedrini, M., Nolan, D., Booth, D., Carroll, W., Lucas, R., Kermode, A.G. and Hart, P. (2017) Evolving Identification of Blood Cells Associated with Clinically Isolated Syndrome: Importance of Time since Clinical Presentation and Diagnostic MRI. International Journal of Molecular Sciences, 18 (6). p. 1277.

Trubiano, J.A., Adkinson, N.F. and Phillips, E.J. (2017) Penicillin allergy is not necessarily forever. JAMA, 318 (1). p. 82.

Trubiano, J.A., Stone, C.A., Grayson, M.L., Urbancic, K., Slavin, M.A., Thursky, K.A. and Phillips, E.J. (2017) The 3 Cs of antibiotic allergy—classification, cross-reactivity, and collaboration. The Journal of Allergy and Clinical Immunology: In Practice, 5 (6). pp. 1532-1542.

Trubiano, J.A., Thursky, K.A., Stewardson, A.J., Urbancic, K., Worth, L.J., Jackson, C., Stevenson, W., Sutherland, M., Slavin, M.A., Grayson, M.L. and Phillips, E.J. (2017) Impact of an Integrated Antibiotic Allergy Testing Program on Antimicrobial Stewardship: A Multicenter Evaluation. Clinical Infectious Diseases, 65 (1). pp. 166-174.

Tseng, A., Hughes, C.A., Wu, J., Seet, J. and Phillips, E.J. (2017) Cobicistat Versus Ritonavir: Similar pharmacokinetic enhancers but some important differences. Annals of Pharmacotherapy, 51 (11). pp. 1008-1022.

Urbancic, K.F., Ierino, F., Phillips, E., Mount, P.F., Mahony, A. and Trubiano, J.A. (2017) Taking the challenge: A protocolized approach to optimize Pneumocystis pneumonia prophylaxis in renal transplant recipients. American Journal of Transplantation, 18 (2). pp. 462-466.

Walker, C.E., Mahede, T., Davis, G., Miller, L.J., Girschik, J., Brameld, K., Sun, W., Rathod, A., Ayme, S., Zubrick, S.R., Baynam, G.S., Molster, C., Dawkins, H.J.S. and Weeramanthri, T.S. (2017) The collective impact of rare diseases in Western Australia: an estimate using a population-based cohort. Genetics in Medicine, 19 (5). pp. 546-552.

Young, A., Ngiow, S.F., Gao, Y., Patch, A-M, Barkauskas, D.S., Messaoudene, M., Lin, G., Coudert, J.D., Stannard, K.A., Zitvogel, L., Degli-Esposti, M.A., Vivier, E., Waddell, N., Linden, J., Huntington, N.D., Souza-Fonseca-Guimaraes, F. and Smyth, M.J. (2017) A2AR adenosine signaling suppresses natural killer cell maturation in the tumor microenvironment. Cancer Research, 78 (4). pp. 1003-1016.

Zahedi, A.ORCID: 0000-0002-0165-3797, Gofton, A., Jian, F., Paparini, A.ORCID: 0000-0002-1105-5184, Oskam, C., Ball, A., Robertson, I.ORCID: 0000-0002-4255-4752 and Ryan, U.ORCID: 0000-0003-2710-9324 (2017) Next generation sequencing uncovers within-host differences in the genetic diversity of Cryptosporidium gp60 subtypes. In: Australian Society for Parasitology Annual Conference 2017, 26 - 29 June 2017, Blue Mountains, NSW, Australia

Zhong, X., Zhou, Y., Lu, T., Wang, Z., Fang, L., Peng, L., Kermode, A.G. and Qiu, W. (2017) Infections in neuromyelitis optica spectrum disorder. Journal of Clinical Neuroscience, 47 . pp. 14-19.

Zhou, Y., Huang, Q., Lu, T., Sun, X., Fang, L., Lu, Z., Hu, X., Kermode, A. and Qiu, W. (2017) Azathioprine therapy in a case of pediatric multiple sclerosis that was seropositive for MOG-IgG. Journal of Clinical Neuroscience, 38 . pp. 71-73.

da Silva Antunes, R., Paul, S., Sidney, J., Weiskopf, D., Dan, J.M., Phillips, E., Mallal, S., Crotty, S., Sette, A. and Lindestam Arlehamn, C.S. (2017) Definition of human epitopes recognized in tetanus toxoid and development of an assay strategy to detect Ex Vivo tetanus CD4+ T cell responses. PLoS ONE, 12 (1).

2016

Angelo, M.A., Grifoni, A., O'Rourke, P.H., Sidney, J., Paul, S., Peters, B., De Silva, A.D., Phillips, E., Mallal, S., Diehl, S.A., Kirkpatrick, B.D., Whitehead, S.S., Durbin, A.P., Sette, A., Weiskopf, D. and Frueh, K. (2016) Human CD4 + T Cell Responses to an Attenuated Tetravalent Dengue Vaccine Parallel Those Induced by Natural Infection in Magnitude, HLA Restriction, and Antigen Specificity. Journal of Virology, 91 (5).

Armstrong, A.R., Herrmann, S.E., Chassany, O., Lalanne, C., Da Silva, M.H., Galano, E., Carrieri, P.M., Estellon, V., Sogni, P. and Duracinsky, M. (2016) The International development of PROQOL-HCV: An instrument to assess the health-related quality of life of patients treated for Hepatitis C virus. BMC Infectious Diseases, 16 (1).

Barnard, R., Chopra, A., James, I., Blinco, J., Watson, M.W.ORCID: 0000-0002-6438-9225, Jabara, C.B., Hazuda, D., Lemon, S.M., Mallal, S. and Gaudieri, S. (2016) Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: Relevance to treatment outcome and resistance screening. Antiviral Therapy, 21 . pp. 567-577.

Bates, K.A., Sohrabi, H.R.ORCID: 0000-0001-8017-8682, Rainey-Smith, S.R., Weinborn, M., Bucks, R.S., Rodrigues, M., Beilby, J., Howard, M., Taddei, K., Martins, G., Paton, A., Shah, T., Dhaliwal, S.S., Foster, J.K., Martins, I.J., Lautenschlager, N.T., Mastaglia, F.L., Gandy, S.E. and Martins, R.N. (2016) Serum high-density lipoprotein is associated with better cognitive function in a cross-sectional study of aging women. International Journal of Neuroscience, 127 (3). pp. 243-252.

Baynam, G., Pachter, N., McKenzie, F., Townshend, S., Slee, J., Kiraly-Borri, C., Vasudevan, A., Hawkins, A., Broley, S., Schofield, L., Verhoef, H., Walker, C.E., Molster, C., Blackwell, J.M., Jamieson, S., Tang, D., Lassmann, T., Mina, K., Beilby, J., Davis, M., Laing, N., Murphy, L., Weeramanthri, T., Dawkins, H. and Goldblatt, J. (2016) The rare and undiagnosed diseases diagnostic service – Application of massively parallel sequencing in a state-wide clinical service. Orphanet Journal of Rare Diseases, 11 (1).

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