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Publications: Australian National Phenome Center

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Number of items at this level: 18.

Journal Article

Barbas-Bernardos, C., Garcia-Perez, I., Lorenzo, M.P., Alonso-Herranz, V., Nicholson, J. and Garcia, A. (2020) Development and validation of a high performance liquid chromatography-tandem mass spectrometry method for the absolute analysis of 17 α D-amino acids in cooked meals. Journal of Chromatography A, 1611 . Art. 460598.

Everett, J.R., Holmes, E., Veselkov, K.A., Lindon, J.C. and Nicholson, J.K. (2019) A unified conceptual framework for metabolic phenotyping in diagnosis and prognosis. Trends in Pharmacological Sciences, 40 (10). pp. 763-773.

Garcia-Perez, I., Posma, J.M., Serrano-Contreras, J.I., Boulangé, C.L., Chan, Q., Frost, G., Stamler, J., Elliott, P., Lindon, J.C., Holmes, E. and Nicholson, J.K. (2020) Identifying unknown metabolites using NMR-based metabolic profiling techniques. Nature Protocols, 15 . pp. 2538-2567.

Gray, N., Gethings, L.A., Plumb, R.S. and Wilson, I.D. (2020) UHPLC-MS-Based lipidomic and metabonomic investigation of the metabolic phenotypes of wild type and hepatic CYP Reductase Null (HRN) mice. Journal of Pharmaceutical and Biomedical Analysis, 186 . Art. 113318.

Kimhofer, T., Lodge, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Loo, R.L., Lawler, N.G., Nitschke, P., Bong, S-H, Morrison, D.L., Begum, S., Richards, T., Yeap, B.B., Smith, C., Smith, K.G.C., Holmes, E. and Nicholson, J.K. (2020) Integrative modeling of quantitative plasma lipoprotein, metabolic, and amino acid data reveals a multiorgan pathological signature of SARS-CoV-2 infection. Journal of Proteome Research .

Koundouros, N., Karali, E., Tripp, A., Valle, A., Inglese, P., Perry, N.J.S., Magee, D.J., Anjomani Virmouni, S., Elder, G.A., Tyson, A.L., Dória, M.L., van Weverwijk, A., Soares, R.F., Isacke, C.M., Nicholson, J.K., Glen, R.C., Takats, Z. and Poulogiannis, G. (2020) Metabolic Fingerprinting Links Oncogenic PIK3CA with Enhanced Arachidonic Acid-Derived Eicosanoids. Cell, 181 (7). 1596-1611.e27.

Kundu, P., Lee, H.U., Garcia-Perez, I., Tay, E.X.Y., Kim, H., Faylon, L.E., Martin, K.A., Purbojati, R., Drautz-Moses, D.I., Ghosh, S., Nicholson, J.K., Schuster, S., Holmes, E. and Pettersson, S. (2019) Neurogenesis and prolongevity signaling in young germ-free mice transplanted with the gut microbiota of old mice. Science Translational Medicine, 11 (518).

Lahiri, S., Kim, H., Garcia-Perez, I., Reza, M.M., Martin, K.A., Kundu, P., Cox, L.M., Selkrig, J., Posma, J.M., Zhang, H., Padmanabhan, P., Moret, C., Gulyás, B., Blaser, M.J., Auwerx, J., Holmes, E., Nicholson, J., Wahli, W. and Pettersson, S. (2019) The gut microbiota influences skeletal muscle mass and function in mice. Science Translational Medicine, 11 (502).

Letertre, M., Munjoma, N.C., Slade, S.E., Plumb, R.S., Swann, J., Coen, M., Nicholson, J.K. and Wilson, I.D. (2020) Metabolic phenotyping using UPLC–MS and rapid microbore UPLC–IM–MS: Determination of the effect of different dietary regimes on the urinary metabolome of the Rat. Chromatographia .

Loo, R.L., Lu, Q., Carter, E.M., Liu, S., Clark, S., Wang, Y., Baumgartner, J., Tang, H. and Chan, Q. (2020) A feasibility study of metabolic phenotyping of dried blood spot specimens in rural Chinese women exposed to household air pollution. Journal of Exposure Science & Environmental Epidemiology .

McGill, D., Chekmeneva, E., Lindon, J.C., Takats, Z. and Nicholson, J.K. (2019) Application of novel solid phase extraction-NMR protocols for metabolic profiling of human urine. Faraday Discussions, 218 . pp. 395-416.

Posma, J.M., Garcia-Perez, I., Frost, G., Aljuraiban, G.S., Chan, Q., Van Horn, L., Daviglus, M., Stamler, J., Holmes, E., Elliott, P. and Nicholson, J.K. (2020) Nutriome–metabolome relationships provide insights into dietary intake and metabolism. Nature Food, 1 (7). pp. 426-436.

Ramne, S., Brunkwall, L., Ericson, U., Gray, N., Kuhnle, G.G.C., Nilsson, P.M., Orho-Melander, M. and Sonestedt, E. (2020) Gut microbiota composition in relation to intake of added sugar, sugar-sweetened beverages and artificially sweetened beverages in the Malmö Offspring Study. European Journal of Nutrition .

Thøgersen, R., Castro-Mejía, J.L., Kræmer Sundekilde, U., Hansen, L.H., Gray, N., Kuhnle, G., Jørgensen, N.R., Hansen, A.K., Nielsen, D.S. and Bertram, H.C. (2020) Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats. Food Chemistry, 331 . Art. 127291.

Vonhof, E.V., Piotto, M., Holmes, E., Lindon, J.C., Nicholson, J.K. and Li, J.V. (2020) Improved spatial resolution of metabolites in tissue biopsies using high-resolution Magic-Angle-Spinning slice localization NMR spectroscopy. Analytical Chemistry, 92 (17). pp. 11516-11519.

West, K.A., Kanu, C., Maric, T., McDonald, J.A.K., Nicholson, J.K., Li, J.V., Johnson, M.R, Holmes, E. and Savvidou, M.D. (2020) Longitudinal metabolic and gut bacterial profiling of pregnant women with previous bariatric surgery. Gut, 69 (8). pp. 1452-1459.

Whiley, L.ORCID: 0000-0002-9088-4799, Nye, L.C., Grant, I., Andreas, N., Chappell, K.E., Sarafian, M.H., Misra, R., Plumb, R.S., Lewis, M.R., Nicholson, J.K., Holmes, E., Swann, J.R. and Wilson, I.D. (2019) Ultrahigh-performance liquid chromatography tandem mass spectrometry with electrospray ionization quantification of tryptophan metabolites and markers of gut health in serum and plasma — Application to clinical and epidemiology cohorts. Analytical Chemistry, 91 (8). pp. 5207-5216.

Yang, R.ORCID: 0000-0003-2563-2015, Brice, B., Berto, B.P. and Ryan, U.M.ORCID: 0000-0003-2710-9324 (2020) Morphological and genetic characterization of Eimeria chalcoptereae n. sp. (Apicomplexa: Eimeriidae) in a common bronzewing pigeon (Phaps chalcoptera) (Latham, 1790) in Western Australia. Parasitology Research .

This list was generated on Tue Oct 20 07:06:54 2020 UTC.