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Publications: Australian National Phenome Centre

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Number of items at this level: 81.

Journal Article

Albreht, A., Hussain, H., Jiménez, B., Yuen, A.H.Y., Whiley, L.ORCID: 0000-0002-9088-4799, Witt, M., Lewis, M.R. and Chekmeneva, E. (2022) Structure elucidation and mitigation of endogenous interferences in LC-MS-Based metabolic profiling of urine. Analytical Chemistry, 94 (3). pp. 1760-1768.

Barbas-Bernardos, C., Garcia-Perez, I., Lorenzo, M.P., Alonso-Herranz, V., Nicholson, J. and Garcia, A. (2020) Development and validation of a high performance liquid chromatography-tandem mass spectrometry method for the absolute analysis of 17 α D-amino acids in cooked meals. Journal of Chromatography A, 1611 . Art. 460598.

Begum, S., Johnson, B.Z., Morillon, A-C, Yang, R.ORCID: 0000-0003-2563-2015, Bong, S-H, Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Fear, V.S., Cuttle, L., Holland, A.J.A., Nicholson, J.K., Wood, F.M., Fear, M.W. and Holmes, E. (2022) Systemic long-term metabolic effects of acute non-severe paediatric burn injury. Scientific Reports, 12 (1). Art. 13043.

Belhaj, M.R., Lawler, N.G., Hawley, J.A., Broadhurst, D.I., Hoffman, N.J. and Reinke, S.N. (2022) Metabolomics reveals mouse plasma metabolite responses to acute exercise and effects of disrupting AMPK-glycogen interactions. Frontiers in Molecular Biosciences, 9 . Art. 957549.

Belhaj, M.R., Lawler, N.G. and Hoffman, N.J. (2021) Metabolomics and lipidomics: Expanding the molecular landscape of exercise biology. Metabolites, 11 (3). Article 151.

Berto, B.P., Brice, B., Thomas, G., Elloit, A., Zahedi, A.ORCID: 0000-0002-0165-3797 and Yang, R.ORCID: 0000-0003-2563-2015 (2022) Eimeria spp. and Tyzzeria perniciosa Allen, 1936 (Apicomplexa: Eimeriidae) from a Pacific black duck, Anas superciliosa Gmelin (Aves: Anseriformes), in western Australia. Current Research in Parasitology & Vector-Borne Diseases, 2 . Art. 100075.

Blaise, B.J., Correia, G.D.S., Haggart, G.A., Surowiec, I., Sands, C., Lewis, M.R., Pearce, J.T.M., Trygg, J., Nicholson, J.K., Holmes, E. and Ebbels, T.M.D. (2021) Statistical analysis in metabolic phenotyping. Nature Protocols .

Brignardello, J., Fountana, S., Posma, J.M., Chambers, E.S., Nicholson, J.K., Wist, J., Frost, G., Garcia-Perez, I. and Holmes, E. (2022) Characterization of diet-dependent temporal changes in circulating short-chain fatty acid concentrations: A randomized crossover dietary trial. The American Journal of Clinical Nutrition .

Chan, Q., Wren, G.M., Lau, C-H.E., Ebbels, T.M.D., Gibson, R., Loo, R.L., Aljuraiban, G.S., Posma, J.M., Dyer, A.R., Steffen, L.M., Rodriguez, B.L., Appel, L.J., Daviglus, M.L., Elliott, P., Stamler, J., Holmes, E. and Van Horn, L. (2022) Blood pressure interactions with the DASH dietary pattern, sodium, and potassium: The International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP). The American Journal of Clinical Nutrition, 116 (1). pp. 216-229.

Dehghan, A., Pinto, R.C., Karaman, I., Huang, J., Durainayagam, B.R., Ghanbari, M., Nazeer, A., Zhong, Q., Liggi, S., Whiley, L.ORCID: 0000-0002-9088-4799, Mustafa, R., Kivipelto, M., Solomon, A., Ngandu, T., Kanekiyo, T., Aikawa, T., Radulescu, C.I., Barnes, S.J., Graça, G., Chekmeneva, E., Camuzeaux, S., Lewis, M.R., Kaluarachchi, M.R., Ikram, M.A., Holmes, E., Tzoulaki, I., Matthews, P.M., Griffin, J.L. and Elliott, P. (2022) Metabolome-wide association study on ABCA7 indicates a role of ceramide metabolism in Alzheimer’s disease. Proceedings of the National Academy of Sciences, 119 (43). Art. e2206083119.

Everett, J.R., Holmes, E., Veselkov, K.A., Lindon, J.C. and Nicholson, J.K. (2019) A unified conceptual framework for metabolic phenotyping in diagnosis and prognosis. Trends in Pharmacological Sciences, 40 (10). pp. 763-773.

Farzana, F., McConville, M., Hannan, A., Hatters, D. and Boughton, B.ORCID: 0000-0001-6342-9814 (2021) Imaging brain metabolism in a mouse model of Huntington's disease. Protein Science, 30 (Supp. 1). p. 27.

Garcia Mendez, D.F., Rengifo Herrera, J.A., Sanabria, J. and Wist, J. (2022) Analysis of the metabolic response of planktonic cells and biofilms of Klebsiella pneumoniae to sublethal disinfection with sodium hypochlorite measured by NMR. Microorganisms, 10 (7). Article 1323.

Garcia-Perez, I., Posma, J.M., Serrano-Contreras, J.I., Boulangé, C.L., Chan, Q., Frost, G., Stamler, J., Elliott, P., Lindon, J.C., Holmes, E. and Nicholson, J.K. (2020) Identifying unknown metabolites using NMR-based metabolic profiling techniques. Nature Protocols, 15 . pp. 2538-2567.

Gethings, L.A., Gray, N., Plumb, R.S. and Wilson, I.D. (2021) Proteomic consequences of the deletion of cytochrome P450 (CYP450) reductase in mice. Journal of Chromatography B, 1179 . Art. 122803.

Gomez, M.V., Ruiz-Castañeda, M., Nitschke, P., Gschwind, R.M. and Jiménez, M.A. (2021) Insights into the micelle-induced β-hairpin-to-α-helix transition of a LytA-derived peptide by photo-CIDNP spectroscopy. International Journal of Molecular Sciences, 22 (13). Article 6666.

Gottlieb, S., Rand, J.S., Ishioka, K., Dias, D.A., Boughton, B.A.ORCID: 0000-0001-6342-9814, Roessner, U., Ramadan, Z. and Anderson, S.T. (2022) Measures of insulin sensitivity, leptin, and adiponectin concentrations in cats in diabetic remission compared to healthy control cats. Frontiers in Veterinary Science, 9 . Art. 905929.

Gray, N., Gethings, L.A., Plumb, R.S. and Wilson, I.D. (2020) UHPLC-MS-Based lipidomic and metabonomic investigation of the metabolic phenotypes of wild type and hepatic CYP Reductase Null (HRN) mice. Journal of Pharmaceutical and Biomedical Analysis, 186 . Art. 113318.

Gray, N., Lawler, N., Zeng, A., Ryan, M., Bong, S-H, Boughton, B.ORCID: 0000-0001-6342-9814, Bizkarguenaga, M., Bruzzone, C., Embade, N., Wist, J., Holmes, E., Millet, O., Nicholson, J. and Whiley, L.ORCID: 0000-0002-9088-4799 (2021) Diagnostic potential of the plasma lipidome in infectious disease: Application to acute SARS-CoV-2 infection. Metabolites, 11 (7). Article 467.

Gray, N., Lawler, N.G., Yang, R.ORCID: 0000-0003-2563-2015, Morillon, A-C, Gay, M.C.L., Bong, S-H, Holmes, E., Nicholson, J.K. and Whiley, L.ORCID: 0000-0002-9088-4799 (2021) A simultaneous exploratory and quantitative amino acid and biogenic amine metabolic profiling platform for rapid disease phenotyping via UPLC-QToF-MS. Talanta, 223 (Pt. 2). Article 121872.

Gupta, S., Smith, P.M.C., Boughton, B.A.ORCID: 0000-0001-6342-9814, Rupasinghe, T.W.T., Natera, S.H.A., Roessner, U. and Gleadow, R. (2021) Inoculation of barley with Trichoderma harzianum T-22 modifies lipids and metabolites to improve salt tolerance. Journal of Experimental Botany, 72 (20). pp. 7229-7246.

Gutiérrez, C.F., Rodríguez-Romero, N., Egan, S.ORCID: 0000-0003-4395-4069, Holmes, E. and Sanabria, J. (2022) Exploiting the potential of bioreactors for creating spatial organization in the soil microbiome: A strategy for increasing sustainable agricultural practices. Microorganisms, 10 (7). Article 1464.

Jiménez, B., Abellona U, M.R., Drymousis, P., Kyriakides, M., Clift, A.K., Liu, D.S.K., Rees, E., Holmes, E., Nicholson, J.K., Kinross, J.M. and Frilling, A. (2021) Neuroendocrine neoplasms: Identification of novel metabolic circuits of potential diagnostic utility. Cancers, 13 (3). Art. 374.

Kadyrov, M., Whiley, L.ORCID: 0000-0002-9088-4799, Brown, B.ORCID: 0000-0001-7927-2540, Erickson, K.I. and Holmes, E. (2022) Associations of the lipidome with ageing, cognitive decline and exercise behaviours. Metabolites, 12 (9). Article 822.

Kimhofer, T., Lodge, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Loo, R.L., Lawler, N.G., Nitschke, P., Bong, S-H, Morrison, D.L., Begum, S., Richards, T., Yeap, B.B., Smith, C., Smith, K.G.C., Holmes, E. and Nicholson, J.K. (2020) Integrative modeling of quantitative plasma lipoprotein, metabolic, and amino acid data reveals a multiorgan pathological signature of SARS-CoV-2 infection. Journal of Proteome Research, 19 (11). pp. 4442-4454.

Klatt, S., Doecke, J.D., Roberts, A., Boughton, B.A.ORCID: 0000-0001-6342-9814, Masters, C.L., Horne, M. and Roberts, B.R. (2021) A six-metabolite panel as potential blood-based biomarkers for Parkinson’s disease. npj Parkinson's Disease, 7 (1). Art. 94.

Koller, K.R., Wilson, A., Normolle, D.P., Nicholson, J.K., Li, J.V., Kinross, J., Lee, F.R., Flanagan, C.A., Merculieff, Z.T., Iyer, P., Lammers, D.L., Thomas, T.K. and O'Keefe, S.J.D. (2021) Dietary fibre to reduce colon cancer risk in Alaska Native people: the Alaska FIRST randomised clinical trial protocol. BMJ Open, 11 (8). Art. e047162.

Koundouros, N., Karali, E., Tripp, A., Valle, A., Inglese, P., Perry, N.J.S., Magee, D.J., Anjomani Virmouni, S., Elder, G.A., Tyson, A.L., Dória, M.L., van Weverwijk, A., Soares, R.F., Isacke, C.M., Nicholson, J.K., Glen, R.C., Takats, Z. and Poulogiannis, G. (2020) Metabolic Fingerprinting Links Oncogenic PIK3CA with Enhanced Arachidonic Acid-Derived Eicosanoids. Cell, 181 (7). 1596-1611.e27.

Kundu, P., Lee, H.U., Garcia-Perez, I., Tay, E.X.Y., Kim, H., Faylon, L.E., Martin, K.A., Purbojati, R., Drautz-Moses, D.I., Ghosh, S., Nicholson, J.K., Schuster, S., Holmes, E. and Pettersson, S. (2019) Neurogenesis and prolongevity signaling in young germ-free mice transplanted with the gut microbiota of old mice. Science Translational Medicine, 11 (518).

Lahiri, S., Kim, H., Garcia-Perez, I., Reza, M.M., Martin, K.A., Kundu, P., Cox, L.M., Selkrig, J., Posma, J.M., Zhang, H., Padmanabhan, P., Moret, C., Gulyás, B., Blaser, M.J., Auwerx, J., Holmes, E., Nicholson, J., Wahli, W. and Pettersson, S. (2019) The gut microbiota influences skeletal muscle mass and function in mice. Science Translational Medicine, 11 (502).

Lawler, N.G., Gray, N., Kimhofer, T., Boughton, B.ORCID: 0000-0001-6342-9814, Gay, M., Yang, R.ORCID: 0000-0003-2563-2015, Morillon, A-C, Chin, S-T, Ryan, M., Begum, S., Bong, S-H, Coudert, J.D., Edgar, D., Raby, E., Pettersson, S., Richards, T., Holmes, E., Whiley, L.ORCID: 0000-0002-9088-4799 and Nicholson, J.K. (2021) Systemic perturbations in amine and kynurenine metabolism associated with acute SARS-CoV-2 infection and inflammatory cytokine responses. Journal of Proteome Research, 20 (5). pp. 2796-2811.

Letertre, M., Munjoma, N.C., Slade, S.E., Plumb, R.S., Swann, J., Coen, M., Nicholson, J.K. and Wilson, I.D. (2020) Metabolic phenotyping using UPLC–MS and rapid microbore UPLC–IM–MS: Determination of the effect of different dietary regimes on the urinary metabolome of the Rat. Chromatographia .

Letertre, M.P.M., Bhatt, A.P., Harvey, M., Nicholson, J.K., Wilson, I.D., Redinbo, M.R. and Swann, J.R. (2022) Characterizing the metabolic effects of the selective inhibition of gut microbial β-glucuronidases in mice. Scientific Reports, 12 (1). Art. 17435.

Letertre, M.P.M., Myridakis, A., Whiley, L.ORCID: 0000-0002-9088-4799, Camuzeaux, S., Lewis, M.R., Chappell, K.E., Thaikkatil, A., Dumas, M-E, Nicholson, J.K., Swann, J.R. and Wilson, I.D. (2021) A targeted ultra performance liquid chromatography – Tandem mass spectrometric assay for tyrosine and metabolites in urine and plasma: Application to the effects of antibiotics on mice. Journal of Chromatography B, 1164 . Art. 122511.

Liu, D., Brice, B., Elliot, A. and Yang, R.ORCID: 0000-0003-2563-2015 (2021) Morphological and molecular characterization of Isospora amphiboluri (Apicomplexa: Eimeriidae), a coccidian parasite, in a central netted dragon (Ctenophorus nuchalis) (De Vis, 1884) in Australia. Parasitology International, 84 . Art. 102386.

Lodge, S., Nitschke, P., Kimhofer, T., Coudert, J.D., Begum, S., Bong, S-H, Richards, T., Edgar, D., Raby, E., Spraul, M., Schaefer, H., Lindon, J.C., Loo, R.L., Holmes, E. and Nicholson, J.K. (2021) NMR spectroscopic windows on the systemic effects of SARS-CoV-2 infection on plasma lipoproteins and metabolites in relation to circulating cytokines. Journal of Proteome Research, 20 (2). pp. 1382-1396.

Lodge, S., Nitschke, P., Kimhofer, T., Wist, J., Bong, S-H, Loo, R.L., Masuda, R., Begum, S., Richards, T., Lindon, J.C., Bermel, W., Reinsperger, T., Schaefer, H., Spraul, M., Holmes, E. and Nicholson, J.K. (2021) Diffusion and relaxation edited Proton NMR Spectroscopy of plasma reveals a High-Fidelity supramolecular biomarker signature of SARS-CoV-2 infection. Analytical Chemistry, 93 (8). pp. 3976-3986.

Lodge, S., Nitschke, P., Loo, R.L., Kimhofer, T., Bong, S-H, Richards, T., Begum, S., Spraul, M., Schaefer, H., Lindon, J.C., Holmes, E. and Nicholson, J.K. (2021) Low volume in Vitro diagnostic proton NMR Spectroscopy of human blood plasma for lipoprotein and metabolite analysis: Application to SARS-CoV-2 biomarkers. Journal of Proteome Research, 20 (2). pp. 1415-1423.

Loo, R.L., Chan, Q., Antti, H., Li, J.V., Ashrafian, H., Elliott, P., Stamler, J., Nicholson, J.K., Holmes, E., Wist, J. and Wren, J. (2020) Strategy for improved characterization of human metabolic phenotypes using a COmbined Multi-block principal components analysis with statistical spectroscopy (COMPASS). Bioinformatics, 36 (21). pp. 5229-5236.

Loo, R.L., Chan, Q., Nicholson, J.K. and Holmes, E. (2022) Balancing the Equation: A Natural History of Trimethylamine and Trimethylamine-N-oxide. Journal of Proteome Research, 21 (3). pp. 560-589.

Loo, R.L., Lu, Q., Carter, E.M., Liu, S., Clark, S., Wang, Y., Baumgartner, J., Tang, H. and Chan, Q. (2020) A feasibility study of metabolic phenotyping of dried blood spot specimens in rural Chinese women exposed to household air pollution. Journal of Exposure Science & Environmental Epidemiology .

Martinez-Seidel, F., Suwanchaikasem, P., Nie, S., Leeming, M.G., Pereira Firmino, A.A., Williamson, N.A., Kopka, J., Roessner, U. and Boughton, B.A.ORCID: 0000-0001-6342-9814 (2021) Membrane-enriched proteomics link ribosome accumulation and proteome reprogramming with cold acclimation in barley root meristems. Frontiers in Plant Science, 12 . Art. 656683.

Masuda, R., Lodge, S., Nitschke, P., Spraul, M., Schaefer, H., Bong, S-H, Kimhofer, T., Hall, D., Loo, R.L., Bizkarguenaga, M., Bruzzone, C., Gil-Redondo, R., Embade, N., Mato, J.M., Holmes, E., Wist, J., Millet, O. and Nicholson, J.K. (2021) Integrative modeling of plasma metabolic and lipoprotein biomarkers of SARS-CoV-2 infection in Spanish and Australian COVID-19 patient cohorts. Journal of Proteome Research, 20 (8). pp. 4139-4152.

Masuda, R., Lodge, S., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Lawler, N., Nitschke, P., Bong, S-H, Kimhofer, T., Loo, R.L., Boughton, B.ORCID: 0000-0001-6342-9814, Zeng, A.X., Hall, D., Schaefer, H., Spraul, M., Dwivedi, G., Yeap, B.B., Diercks, T., Bernardo-Seisdedos, G., Mato, J.M., Lindon, J.C., Holmes, E., Millet, O., Wist, J. and Nicholson, J.K. (2022) Exploration of human serum lipoprotein supramolecular phospholipids using statistical heterospectroscopy in n-Dimensions (SHY-n): Identification of potential cardiovascular risk biomarkers related to SARS-CoV-2 infection. Analytical Chemistry, 94 (10). pp. 4426-4436.

McGill, D., Chekmeneva, E., Lindon, J.C., Takats, Z. and Nicholson, J.K. (2019) Application of novel solid phase extraction-NMR protocols for metabolic profiling of human urine. Faraday Discussions, 218 . pp. 395-416.

Mujagic, Z., Kasapi, M., Jonkers, D.M., Garcia-Perez, I., Vork, L., Weerts, Z.Z.R.M., Serrano-Contreras, J.I., Zhernakova, A., Kurilshikov, A., Scotcher, J., Holmes, E., Wijmenga, C., Keszthelyi, D., Nicholson, J.K., Posma, J.M and Masclee, A.A. (2022) Integrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome. Gut Microbes, 14 (1). Art. e2063016.

Mujagic, Z., Kasapi, M., Jonkers, D.M., Garcia-Perez, I., Weerts, Z.Z.R.M., Vork, L., Serrano-Contreras, J-I, Zhernakova, A., Kurilshikov, A., Holmes, E., Keszthelyi, D., Nicholson, J.K., Posma, J.M., Masclee, A.A. and Wijmenga, C. (2021) Integrated faecal microbiome-metabolome signatures reflect stress and serotonin metabolism in Irritable Bowel Syndrome. Neurogastroenterology and motility, 33 (Supp. 2). Art. 745290.

Nicholson, J.K., Jia, W., Lasky-Su, J.A. and Barbas, C. (2022) Metabolic modeling in health and disease. Journal of Proteome Research, 21 (3). p. 559.

Nitschke, P., Lodge, S., Hall, D., Schaefer, H., Spraul, M., Embade, N., Millet, O., Holmes, E., Wist, J. and Nicholson, J.K. (2022) Direct low field J-edited diffusional proton NMR spectroscopic measurement of COVID-19 inflammatory biomarkers in human serum. The Analyst, 147 (19). pp. 4213-4221.

Nitschke, P., Lodge, S., Kimhofer, T., Masuda, R., Bong, S-H, Hall, D., Schäfer, H., Spraul, M., Pompe, N., Diercks, T., Bernardo-Seisdedos, G., Mato, J.M., Millet, O., Susic, D., Henry, A., El-Omar, E.M., Holmes, E., Lindon, J.C., Nicholson, J.K. and Wist, J. (2022) J-Edited diffusional proton nuclear magnetic resonance spectroscopic measurement of glycoprotein and supramolecular phospholipid biomarkers of inflammation in human serum. Analytical Chemistry, 94 (2). pp. 1333-1341.

Ospina-Betancourth, C., Echeverría, S., Rodriguez-Gonzalez, C., Wist, J., Combariza, M.Y. and Sanabria, J. (2022) Enhancement of PHA Production by a Mixed Microbial Culture Using VFA Obtained from the Fermentation of Wastewater from Yeast Industry. Fermentation, 8 (4). Art. 180.

Papamichou, D., Panagiotakos, D.B., Holmes, E., Koutsakis, P.ORCID: 0000-0002-4168-0888, Katsoulotos, H., Loo, R.L. and Itsiopoulos, C. (2021) The rationale and design of a Mediterranean diet accompanied by time restricted feeding to optimise the management of type 2 diabetes: the MedDietFast randomised controlled trial. Nutrition, Metabolism and Cardiovascular Diseases, 32 (1). pp. 220-230.

Posma, J.M., Garcia-Perez, I., Frost, G., Aljuraiban, G.S., Chan, Q., Van Horn, L., Daviglus, M., Stamler, J., Holmes, E., Elliott, P. and Nicholson, J.K. (2021) Author Correction: Nutriome–metabolome relationships provide insights into dietary intake and metabolism. Nature Food .

Posma, J.M., Garcia-Perez, I., Frost, G., Aljuraiban, G.S., Chan, Q., Van Horn, L., Daviglus, M., Stamler, J., Holmes, E., Elliott, P. and Nicholson, J.K. (2020) Nutriome–metabolome relationships provide insights into dietary intake and metabolism. Nature Food, 1 (7). pp. 426-436.

Posma, J.M., Stamler, J., Garcia-Perez, I., Chan, Q., Wijeyesekera, A., Daviglus, M., Van Horn, L., Holmes, E., Nicholson, J. and Elliott, P. (2021) Urinary metabolic phenotype of blood pressure. Journal of Hypertension, 39 (Supp.1). e70.

Ramne, S., Brunkwall, L., Ericson, U., Gray, N., Kuhnle, G.G.C., Nilsson, P.M., Orho-Melander, M. and Sonestedt, E. (2020) Gut microbiota composition in relation to intake of added sugar, sugar-sweetened beverages and artificially sweetened beverages in the Malmö Offspring Study. European Journal of Nutrition, 60 . pp. 2087-2097.

Richman, T.R., Ermer, J.A., Siira, S.J., Kuznetsova, I., Brosnan, C.A., Rossetti, G., Baker, J., Perks, K.L., Cserne Szappanos, H., Viola, H.M., Gray, N., Larance, M., Hool, L.C., Zuryn, S., Rackham, O. and Filipovska, A. (2021) Mitochondrial mistranslation modulated by metabolic stress causes cardiovascular disease and reduced lifespan. Aging Cell, 20 (7). Art. e13408.

Roberts, J.L., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Gay, M. and Lawler, N.G. (2022) Advanced microsamples: Current applications and considerations for mass spectrometry-based metabolic phenotyping pipelines. Separations, 9 (7). Article 175.

Rolletschek, H., Mayer, S., Boughton, B.ORCID: 0000-0001-6342-9814, Wagner, S., Ortleb, S., Kiel, C., Roessner, U. and Borisjuk, L. (2021) The metabolic environment of the developing embryo: A multidisciplinary approach on oilseed rapeseed. Journal of Plant Physiology, 265 . Art. 153505.

Rossetti, G., Ermer, J.A., Stentenbach, M., Siira, S.J., Richman, T.R., Milenkovic, D., Perks, K.L., Hughes, L.A., Jamieson, E., Xiafukaiti, G., Ward, N.C., Takahashi, S., Gray, N., Viola, H.M., Hool, L.C., Rackham, O. and Filipovska, A. (2021) A common genetic variant of a mitochondrial RNA processing enzyme predisposes to insulin resistance. Science Advances, 7 (39). Art. eabi7514.

Sanabria, J., Egan, S.ORCID: 0000-0003-4395-4069, Masuda, R., Lee, A.J., Gibson, G.R., Nicholson, J.K., Wist, J. and Holmes, E. (2022) Overview of the nomenclature and network of contributors to the development of bioreactors for human gut simulation using bibliometric tools: A fragmented landscape. Journal of Agricultural and Food Chemistry, 70 (37). pp. 11458-11467.

Shafaei, A., Vamathevan, V., Pandohee, J., Lawler, N.G., Broadhurst, D. and Boyce, M.C. (2021) Sensitive and quantitative determination of short-chain fatty acids in human serum using liquid chromatography mass spectrometry. Analytical and Bioanalytical Chemistry, 413 . pp. 6333-6342.

Suwanchaikasem, P., Idnurm, A., Selby-Pham, J., Walker, R. and Boughton, B.A.ORCID: 0000-0001-6342-9814 (2022) Root-TRAPR: a modular plant growth device to visualize root development and monitor growth parameters, as applied to an elicitor response of Cannabis sativa. Plant Methods, 18 (1). Art. 46.

Thøgersen, R., Castro-Mejía, J.L., Kræmer Sundekilde, U., Hansen, L.H., Gray, N., Kuhnle, G., Jørgensen, N.R., Hansen, A.K., Nielsen, D.S. and Bertram, H.C. (2020) Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats. Food Chemistry, 331 . Art. 127291.

Tomkins, N.E., Girling, J.E., Boughton, B.ORCID: 0000-0001-6342-9814 and Holdsworth-Carson, S.J. (2022) Is there a role for small molecule metabolite biomarkers in the development of a diagnostic test for endometriosis? Systems Biology in Reproductive Medicine, 68 (2). pp. 89-112.

U, M.R.A., Shen, E.Y-L, Cartlidge, C., Alkhatib, A., Thursz, M.R., Waked, I., Gomaa, A.I., Holmes, E., Sharma, R. and Taylor-Robinson, S.D. (2022) Optimized systematic review tool: Application to candidate biomarkers for the diagnosis of hepatocellular carcinoma. Cancer Epidemiology, Biomarkers & Prevention, 31 (7). pp. 1261-1274.

Vonhof, E.V., Piotto, M., Holmes, E., Lindon, J.C., Nicholson, J.K. and Li, J.V. (2020) Improved spatial resolution of metabolites in tissue biopsies using high-resolution Magic-Angle-Spinning slice localization NMR spectroscopy. Analytical Chemistry, 92 (17). pp. 11516-11519.

Wei, G.Z., Martin, K.A., Xing, P.Y., Agrawal, R., Whiley, L.ORCID: 0000-0002-9088-4799, Wood, T.K., Hejndorf, S., Ng, Y.Z., Low, J.Z.Y., Rossant, J., Nechanitzky, R., Holmes, E., Nicholson, J.K., Tan, E-K, Matthews, P.M. and Pettersson, S. (2021) Tryptophan-metabolizing gut microbes regulate adult neurogenesis via the aryl hydrocarbon receptor. Proceedings of the National Academy of Sciences, 118 (27). Art. e2021091118.

West, K.A., Kanu, C., Maric, T., McDonald, J.A.K., Nicholson, J.K., Li, J.V., Johnson, M.R, Holmes, E. and Savvidou, M.D. (2020) Longitudinal metabolic and gut bacterial profiling of pregnant women with previous bariatric surgery. Gut, 69 (8). pp. 1452-1459.

Whiley, L.ORCID: 0000-0002-9088-4799, Nye, L.C., Grant, I., Andreas, N., Chappell, K.E., Sarafian, M.H., Misra, R., Plumb, R.S., Lewis, M.R., Nicholson, J.K., Holmes, E., Swann, J.R. and Wilson, I.D. (2019) Ultrahigh-performance liquid chromatography tandem mass spectrometry with electrospray ionization quantification of tryptophan metabolites and markers of gut health in serum and plasma — Application to clinical and epidemiology cohorts. Analytical Chemistry, 91 (8). pp. 5207-5216.

Wu, S., You, F., Boughton, B.ORCID: 0000-0001-6342-9814, Liu, Y., Nguyen, T.A.H., Wykes, J., Southam, G., Robertson, L.M., Chan, T-S, Lu, Y-R, Lutz, A., Yu, D., Yi, Q., Saha, N. and Huang, L. (2021) Chemodiversity of dissolved organic matter and its molecular changes driven by rhizosphere activities in Fe Ore tailings undergoing Eco-Engineered pedogenesis. Environmental Science & Technology, 55 (19). pp. 13045-13060.

Yang, R.ORCID: 0000-0003-2563-2015, Brice, B., Berto, B.P. and Ryan, U.ORCID: 0000-0003-2710-9324 (2021) Morphological and molecular description of a new species of Isospora (Apicomplexa) from a New Holland honeyeater (Phylidonyris novaehollandiae). Parasitology International, 83 . Art. 102348.

Yang, R.ORCID: 0000-0003-2563-2015, Brice, B., Berto, B.P. and Ryan, U.M.ORCID: 0000-0003-2710-9324 (2020) Morphological and genetic characterization of Eimeria chalcoptereae n. sp. (Apicomplexa: Eimeriidae) in a common bronzewing pigeon (Phaps chalcoptera) (Latham, 1790) in Western Australia. Parasitology Research .

Yang, R.ORCID: 0000-0003-2563-2015, Brice, B., Berto, B.P. and Zahedi, A.ORCID: 0000-0002-0165-3797 (2021) Morphological and molecular characterization of a new species of Isospora Schneider, 1881 (Apicomplexa: Eimeriidae) from the western wattlebird Anthochaera lunulata Gould in Western Australia. Current Research in Parasitology & Vector-Borne Diseases, 1 . Art. 100050.

Yang, R.ORCID: 0000-0003-2563-2015, Brice, B., Liu, Q., Berto, B.P., Austen, J.ORCID: 0000-0002-1826-1634 and Ryan, U.M.ORCID: 0000-0003-2710-9324 (2021) Morphological and genetic characterization of the first Isospora species (I. lugensae n. sp.) from a Kerguelen petrel (Lugensa brevirostris). Parasitology Research .

Yau, A., Fear, M.W., Gray, N., Ryan, M., Holmes, E., Nicholson, J.K., Whiley, L.ORCID: 0000-0002-9088-4799 and Wood, F.M. (2022) Enhancing the accuracy of surgical wound excision following burns trauma via application of Rapid Evaporative IonisationMass Spectrometry (REIMS). Burns, 48 (7). pp. 1574-1583.

Yeap, B.B., Marriott, R.J., Manning, L., Dwivedi, G., Hankey, G.J., Wu, F.C.W., Nicholson, J.K. and Murray, K. (2022) Higher premorbid serum testosterone predicts COVID-19-related mortality risk in men. European Journal of Endocrinology, 187 (1). pp. 159-170.

Yeung, K.T.D., Penney, N., Whiley, L.ORCID: 0000-0002-9088-4799, Ashrafian, H., Lewis, M.R., Purkayastha, S., Darzi, A. and Holmes, E. (2022) The impact of bariatric surgery on serum tryptophan–kynurenine pathway metabolites. Scientific Reports, 12 (1). Art. 294.

Non-refereed Article

Roberts, J.L., Whiley, L.ORCID: 0000-0002-9088-4799, Gray, N., Gay, M.C.L. and Lawler, N.G. (2022) Advanced microsamples: Current applications and considerations for mass spectrometry-based metabolic phenotyping pipelines. Preprints, Version 1 .


Hall, Courtney Amber (2021) Investigation into the use of NMR-based bioinformatics in determining the composition and quality of immune supplements in Australia. Masters by Research thesis, Murdoch University.

Creative Output

Mitsopoulos, N. and Nicholson, J.K. (2022) Long Covid. [Radio Broadcast] [Creative Output]

This list was generated on Thu Dec 1 23:59:25 2022 UTC.