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Publications: Watson, Mark

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Number of items: 35.

Journal Article

Noto, J.M., Chopra, A., Loh, J., Romero-Gallo, J., Piazuelo, M.B., Watson, M.W., Leary, S., Beckett, A., Cover, T., Mallal, S., Israel, D. and Peek, R.M. (2017) Carcinogenic host microenvironments target and modify key pathogenic loci within helicobacter pylori. Gastroenterology, 152 (5). S666.

McGovern, A.M., Androga, G.O., Knight, D.R., Watson, M.W., Elliott, B., Foster, N.F., Chang, B.J. and Riley, T.V. (2017) Prevalence of binary toxin positive Clostridium difficile in diarrhoeal humans in the absence of epidemic ribotype 027. PLoS ONE, 12 (11). e0187658.

Almeida, C., van Miert, P., O'Driscoll, K., Zoet, Y.M., Chopra, A., Watson, M., de Santis, D., Witt, C., John, M., Claas, F.H.J. and D'Orsogna, L.J. (2017) Stimulation of HIV-specific T cell clonotypes using allogeneic HLA. Cellular Immunology, 316 . pp. 32-40.

Lee, S., Laiman, A., French, M.A, Flexman, J., Watson, M.W. and Price, P. (2017) The dynamics of HCV-specific antibody responses in HIV/HCV patients on long-term antiretroviral therapy. Clinical Immunology, 179 . pp. 54-63.

Barnard, R., Chopra, A., James, I., Blinco, J., Watson, M.W., Jabara, C.B., Hazuda, D., Lemon, S.M., Mallal, S. and Gaudieri, S. (2016) Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: Relevance to treatment outcome and resistance screening. Antiviral Therapy, 21 . pp. 567-577.

Creaney, J., Ma, S., Sneddon, S.A., Tourigny, M.R., Dick, I.M., Leon, J.S., Khong, A., Fisher, S.A., Lake, R.A., Lesterhuis, W.J., Nowak, A.K., Leary, S., Watson, M.W. and Robinson, B.W. (2015) Strong spontaneous tumor neoantigen responses induced by a natural human carcinogen. OncoImmunology, 4 (7). e1011492.

Lee, S., Hammond, T., Watson, M.W., Flexman, J.P., Cheng, W., Fernandez, S. and Price, P. (2010) Could a loss of memory T cells limit responses to hepatitis C virus (HCV) antigens in blood leucocytes from patients chronically infected with HCV before and during pegylated interferon-α and ribavirin therapy? Clinical & Experimental Immunology, 161 (1). pp. 118-126.

Lee, S., Watson, M.W., Flexman, J.P., Cheng, W., Hammond, T. and Price, P. (2010) Increased proportion of the CD56(bright) NK cell subset in patients chronically infected with hepatitis C virus (HCV) receiving interferon-α and ribavirin therapy. Journal of Medical Virology, 82 (4). pp. 568-574.

Hammond, T., Lee, S., Watson, M.W., Flexman, J.P., Cheng, W., Fernandez, S. and Price, P. (2010) Toll-like receptor (TLR) expression on CD4+ and CD8+ T-cells in patients chronically infected with hepatitis C virus. Cellular Immunology, 264 (2). pp. 150-155.

Bosio, E., Beilharz, M.W., Watson, M.W. and Lawson, C.M. (1999) Efficacy of low-dose oral use of type I interferon in cytomegalovirus infections in vivo. Journal of Interferon & Cytokine Research, 19 (8). pp. 869-876.

Beilharz, M.W., McDonald, W., Watson, M.W., Heng, J., McGeachie, J. and Lawson, C.M. (1997) Low-dose oral type I interferons reduce early virus replication of murine cytomegalovirus in vivo. Journal of Interferon & Cytokine Research, 17 (10). pp. 625-630.

Conference Paper

Cooper, D., Chopra, A., Blinco, J., Sharma, L., Dunn, D., Watson, M. and Mallal, S. (2014) HLA typing from second generation sequencing data – where are we headed? In: Asia Pacific Histocompatibility & Immunogenetics Association Conference, 15 - 19 November 2014, Peter Doherty Institute, Melbourne

Chopra, A., Cooper, D., Sharma, L., Plauzolles, A., Watson, M., Rauch, A., Gaudieri, S. and Mallal, S. (2013) KIR Genotyping using a real time assay and FLX 454. In: 23rd Annual Combined Biological Sciences Meeting (CBSM) 2013, 30 August 2013, University of Western Australia, Perth

Conference Item

Leary, S., Cooper, D., Chopra, A., Watson, M. and Mallal, S. (2016) Analysis and visualisation tools for NGS sequence data. In: Science on the Swan 2016, 2 - 5 May 2016, Perth, Western Australia.

Chopra, A., Gaudieri, S., Pilkington, M., Blinco, J., Leary, S., Cooper, D., Abana, C., Watson, M., Kalams, S. and Mallal, S. (2016) Cutting edge tools for phenotyping and characterising T-Cell subsets. In: Science on the Swan 2016, 2 - 5 May 2016, Perth, Western Australia.

Chopra, A., Gaudieri, S., Clark, H., Blinco, J., Cooper, D., Leary, S., Watson, M. and Mallal, S. (2015) Cutting edge tools for Phenotyping and characterising T-Cell subsets. In: Science on the Swan, 21 - 23 April 2015, Perth, Western Australia.

Cooper, D., Chopra, A., Blinco, J., Leary, S., Watson, M. and Mallal, S. (2015) Hybridization based enrichment for genotyping HLA and KIR genes using Next Generation Sequencing. In: Science on the Swan, 21 - 23 April 2015, Perth, Western Australia.

Chopra, A., Clark, H., Blinco, J., John, M., Watson, M. and Mallal, S. (2015) Identification of clonal TCR expansion using Next Generation Sequencing. In: Science on the Swan, 21 - 23 April 2015, Perth, Western Australia.

Vaezeslami, S., Tao, J., Blinco, J., Yu, F., Sinha, R., Heo, S-J, Miller, D., Watson, M., Pitcher, D., Boffelli, D., Quake, S., Weissman, I. and Jenkins, J. (2015) Methods for reduced cost and lower sample prep volumes for genetic analysis applications. In: American Society of Human Genetics (ASHG) 2015 Annual Meeting, 6 - 10 October 2015, Baltimore, MD.

Bernard, R., Chopra, A., James, I., Cooper, D., Blinco, J., Watson, M., Jabara, C., Lemon, S., Mallal, S. and Gaudieri, S. (2015) Ultra-deep sequencing reveals dynamics of drug Resistance-Associated variants in Hepatitis C viruses: Relevance to treatment outcome and resistance screening. In: Science on the Swan, 21 - 23 April 2015, Perth, Western Australia.

Snowball, F., Watson, M. and Chopra, A. (2014) Methods for reducing sequence resampling and improving sample enrichment for Human Virome Sequencing. In: 24th Annual Combined Biological Sciences Meeting 2014, 29 August 2014, University of Western Australia, Perth.

Watson, M. (2013) Accurate identification of HCV sequence variants using deep sequencing with a primer ID. In: Australian Centre for HIV and Hepatitis Virology Research (ACH2) 4th Annual Workshop, 4 - 6 June 2008, Novotel Barossa Valley Resort, South Australia.

Allan, J., Qui, S., Clark, H., Hofmann, K., Watson, M. and Trinder, D. (2013) Does HCV alter the iron status of infected cells? In: 20th International Symposium on Hepatitis C Virus and Related Viruses, 6-10 October 2013, Melbourne, Australia.

Cooper, D., Chopra, A., Blinco, J., Watson, M., Gaudieri, S. and Mallal, S. (2013) Forensic analysis of mitochondrial DNA mixtures by 454 FLX sequencing. In: 23rd Annual Combined Biological Sciences Meeting (CBSM) 2013, 30 August 2013, University of Western Australia, Perth.

Leary, S., Cooper, D., Chopra, A., Watson, M. and Mallal, S. (2013) IIID VGAS - A visual genome analysis studio incorporating high performance next generation sequence analysis. In: 23rd Annual Combined Biological Sciences Meeting (CBSM) 2013, 30 August 2013, University of Western Australia, Perth.

Leary, S., Cooper, D., Chopra, A., Watson, M. and Mallal, S. (2013) IIID VGAS: A visual genome analysis studio incorporating high performance next generation sequence analysis. In: Great Lakes Bioinformatics Conference (GLBIO) 2013, 14 - 16 May 2013, Pittsburgh, PA.

Chopra, A., Cooper, D., Sharma, L., Plauzolles, A., Watson, M.W., Rauch, A., Gaudieri, S. and Mallal, S. (2013) KIR genotyping using a real time assay and FLX454. In: 23rd Annual Combined Biological Sciences Meeting (CBSM) 2013, 30 August 2013, University of Western Australia, Perth.

Van Trigt, J., Clark, H., Watson, M. and Allan, J. (2013) Optimisation of a reporter cell line for assessing neutralising antibody titres to hepatitis C virus. In: 23rd Annual Combined Biological Sciences Meeting (CBSM) 2013, 30 August 2013, University of Western Australia, Perth.

Cooper, D., Chopra, A., Blinco, J., Jabara, C., Lemon, S., Barnard, R., Gaudieri, S., Watson, M. and Mallal, S. (2012) Accurate identification of HCV sequence variants using deep sequencing with a primer ID. In: 22nd Annual Combined Biological Sciences Meeting, 24 August 2012, University of Western Australia, Perth.

Chopra, A., Cooper, D., Sharma, L., Choo, L., Blinco, J., Dunn, D., Leary, S., Watson, M. and Mallal, S. (2012) High throughput HLA sequence-based typing using Next Generation Sequencing. In: 22nd Annual Combined Biological Sciences Meeting, 24 August 2012, University of Western Australia, Perth.

Cooper, D., Patsopoulos, N., Chopra, A., Watson, M., de Bakker, P. and Mallal, S. (2011) HLA Class I typing based on FLX 454 sequencing. In: 21st Annual Combined Biological Sciences Meeting, 26 August 2011, Perth, Western Australia.

Rive, C., Watson, M., Chopra, A., Cooper, D., Demaine, E. and Mallal, S. (2011) Development of a low bias target enrichment method to estimate viral variation using 454 sequencing. In: 21st Annual Combined Biological Sciences Meeting, 26 August 2011, Perth, Western Australia.

Chopra, A., Cooper, D., Demaine, E., Rive, C., Keane, N., Watson, M., Bar, K.J., Shaw, G.M., John, M. and Mallal, S. (2011) Importance of Primer selection and PCR amplification in Estimating HIV viral variation using traditional and 454 FLX sequencing. In: 23rd Australasian HIV/AIDS Conference, 26-28 September 2011, Canberra, ACT, Australia.

Wilson, G.F.V., Chopra, A., Watson, M. and Mallal, S. (2010) Front end modification of library preparation for GS FLX to minimize cost, sample loss and labour. In: Combined Biological Sciences Meeting., 28 August 2010, UWA Perth, Western Australia.

Chopra, A., Watson, M., Cooper, D., Leary, S., John, M. and Mallal, S. (2009) High throughput long amplicon sequencing, assembly and reference mapping of HIV genome using the GS FLX sequencer. In: 21st Annual Conference of the Australasian Society for HIV Medicine (ASHM), 9 - 11 September, Brisbane, Australia.

This list was generated on Wed Nov 22 03:23:02 2017 UTC.