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Publications: Hunter, Adam

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Number of items: 38.

Journal Article

Bellgard, M., Beroud, C., Parkinson, K., Harris, T., Ayme, S., Baynam, G., Weeramanthri, T., Dawkins, H. and Hunter, A. (2014) Correction: Dispelling myths about rare disease registry system development. Source Code for Biology and Medicine, 9 (1).

Bellgard, M.I., Render, L., Radochonski, M. and Hunter, A. (2014) Second generation registry framework. Source Code for Biology and Medicine, 9 (1).

Bellgard, M., Taplin, R., Chapman, B., Livk, A., Wellington, C., Hunter, A. and Lipscombe, R. (2013) Classification of fish samples via an integrated proteomics and bioinformatics approach. Proteomics, 13 (21). pp. 3124-3130.

Bellgard, M., Beroud, C., Parkinson, K., Harris, T., Ayme, S., Baynam, G., Weeramanthri, T., Dawkins, H. and Hunter, A. (2013) Dispelling myths about rare disease registry system development. Source Code for Biology and Medicine, 8 (1). p. 21.

Hunter, A.A., Macgregor, A.B., Szabo, T., Wellington, C. and Bellgard, M.I. (2012) Yabi: An online research environment for grid, high performance and cloud computing. Source Code for Biology and Medicine, 7 (1). p. 1.

Bellgard, M.I., Macgregor, A., Janon, F., Harvey, A., O'Leary, P., Hunter, A. and Dawkins, H. (2012) A modular approach to disease registry design: Successful adoption of an internet-based rare disease registry. Human Mutation, 33 (10). E2356-E2366.

Bellgard, M.I., Moolhuijzen, P.M., Guerrero, F.D., Schibeci, D., Rodriguez-Valle, M., Peterson, D.G., Dowd, S.E., Barrero, R., Hunter, A., Miller, R.J. and Lew-Tabor, A.E. (2011) CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus. International Journal for Parasitology, 42 (2). pp. 161-169.

Wanchanthuek, P., Bellgard, M., La, T., Ryan, K., Moolhuijzen, P., Chapman, B., Black, M.L., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J. (2010) The complete genome sequence of the pathogenic intestinal spirochete Brachyspira pilosicoli and comparison with other Brachyspira genomes. PLoS ONE, 5 (7). pp. 1-16.

Bellgard, M., Wanchanthuek, P., La, T., Ryan, K., Moolhuijzen, P., Albertyn, Z., Shaban, B., Motro, Y., Dunn, D.S., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J. (2009) Genome sequence of the pathogenic intestinal spirochete Brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. PLoS ONE, 4 (3). e4641.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) Erratum: LegumeDB bioinformatics resource: comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species. Genome, 49 (9). pp. 1206-1207.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species. Genome, 49 (6). pp. 689-699.

Bellgard, M., Williams, H., Smith, C., Macgregor, A., Hunter, A., Appels, R. and Griffiths, T. (2005) Grains composition and nutrition online database. Asia Pacific Journal of Clinical Nutrition, 14 (Supp. S110).

Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M. and Appels, R. (2004) Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Functional & Integrative Genomics, 4 (2). pp. 118-130.

Li, C., Ni, P., Francki, M., Hunter, A., Zhang, Y., Schibeci, D., Li, H., Tarr, A., Wang, J., Cakir, M., Yu, J., Bellgard, M., Lance, R. and Appels, R. (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Functional & Integrative Genomics, 4 (2). pp. 84-93.

Bellgard, M., Gamble, T., Reynolds, M., Hunter, A., Trifonov, E. and Taplin, R. (2003) Gap mapping: A paradigm for aligning two sequences. Applied Bioinformatics, 2 (3 Suppl). S31-S35.

Bellgard, M., Hunter, A. and Kenworthy, W.D. (2003) Microarray analysis using bioinformatics analysis audit trails (BAATs). Comptes Rendus Biologies, 326 (10-11). pp. 1083-1087.

Bellgard, M.I., Hiew, H.L., Hunter, A. and Wiebrands, M. (1999) ORBIT: An integrated environment for user-customized bioinformatics tools. Bioinformatics, 15 (10). pp. 847-851.

Conference Paper

Wang, Z., King, E., Smith, G., Bellgard, M., Broomhall, M., Chedzey, H., Fearns, P., Garcia, R., Hunter, A., Lynch, M. and Schibeci, D. (2011) RS-YABI: A workflow system for Remote Sensing Processing in AusCover. In: MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty, 12 - 16 December, Perth, Western Australia pp. 1167-1173.

Fearns, P., Bellgard, M., Broomhall, M., Chedzey, H., Garcia, R., Hunter, A., King, E., Lynch, M., Schibeci, D. and Smith, G. (2011) Web-based processing of remote sensing data in a workflows environment. In: 34th International Symposium on Remote Sensing of Environment (ISRSE2011): The GEOSS Era: Towards Operational Environmental Monitoring , 10 - 15 April 2011, Sydney Convention & Exhibition Centre, N.S.W

Bellgard, M., Moolhuijzen, P., Guerrero, F.D., Appels, R., Schibeci, D., Rodriguez-Valle, M., Barrero, R., Hunter, A. and Lew-Tabor, A. (2011) A new web-based genomics resource for bioinformatics analysis of Rhipicephalus (Boophilus) microplus: CattleTickBase. In: Ticks and Tick-borne Pathogens International Conference (TTP-7) 2011, 28 August - 2 September 2011, Zaragoza, Spain

Guerrero, F.D., Moolhuijzen, P., Peterson, D.G., Bellgard, M.I., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Nene, V.M. and Lew-Tabor, A.E. (2010) Cot filtration approach for advancing genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. In: Entomology 2010: ESA 58th Annual Meeting, 12 - 15 December 2010, San Diego, CA

Bellgard, M., Guerrero, F.D., Moolhuijzen, P., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Gondro, C. and Lew-Tabor, A.E. (2010) Toward a genome sequence for Rhipicephalus (Boophilus) microplus: Cattle tick base available resources for the research community. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August , Melbourne, Australia

Cakir, M., McLean, R., Wilson, R., Barclay, I., Moore, C., Loughman, R., Haley, S., Kidwell, K., Anderson, J., Sorrells, M., Manes, Y., Hayden, M., Feuillet, C., William, M., Hunter, A. and Bellgard, M. (2007) Genome level targeted breeding in wheat. In: Plant & Animal Genomes XV Conference, 13 - 17 January 2007, San Diego, CA

Hunter, A., Schibeci, D., Hiew, H.L. and Bellgard, M. (2005) Grendel: A bioinformatics web service-based architecture for accessing HPC resources. In: 3rd Australasian Workshop on Grid Computing and e-Research, AusGrid 2005 and 3rd Australasian Information Security Workshop, AISW 2005, 31 January - 1 February, Newcastle, Australia

Nozaki, Y., Macgregor, A., Smith, C., Hunter, A. and Bellgard, M. (2005) Multidotter: Dot-matrix program for multiple sequences. In: Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05, 20 - 23 June, Las Vegas, USA

Moolhuijzen, P., Cakir, M., Madsen, L., Li, D., Hunter, A., Schibeci, D., Francki, M., Appels, R., Sandal, N. and Bellgard, M. (2004) Detailed comparative genomics and novel cross-species marker identification in Lupin and pasture legume species: Application of the legumeDB bioinformatics resources. In: Plant Genomics European Meeting , 22 - 25 September 2004, Lyon, France

Hunter, A., Schibeci, D., Hiew, H.L. and Bellgard, M. (2004) GRID-enabled bioinformatics applications for comparative genomic analysis at the CBBC. In: 2004 IEEE International Conference on Cluster Computing, ICCC 2004, 20 - 23 September, San Diego, CA, USA p. 486.

Cakir, M., Appels, R., Hunter, A., Schibeci, D., Li, C. and Bellgard, M. (2004) A consensus molecular genetic map of barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 144-148.

Dwyer, G., Loo, H.P., Schibeci, D., Hunter, A., Siddique, K., Khan, T., Bellgard, M. and Jones, M. (2002) Molecular and bioinformatics approaches for chickpea (Cicer arietinum L.) improvement. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Conference Item

Moolhuijzen, P., Ryan, K., Lew-Tabor, A., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Bioinformatics resource to capture, integrate and analyse diverse data types. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Appels, R., Lew-Tabor, A., Rodriguez-Valle, M., Morgan, J., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) De-novo sequence assembly and characterization of the complex genome of five BACS from Rhipicephalus microplus. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Lew-Tabor, A., Rodriguez-Valle, M., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Transcriptome wide high throughput bioninformatics pipeline for vaccine candidate identification. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Barrero, R.A., Albertyn, Z., Hercus, C., Hunter, A., Dennis, L., Shannon, M.F. and Bellgard, M. (2008) Benchmarking tools for aligning millions of short reads and implementation of a web-based data processing interface. In: 19th International Conference on Genome Informatics (GIW2008), 1 - 3 December 2008, Gold Coast, QLD.

Black, M.L., Dunn, D., Tangtulyangkul, P., Hunter, A., Bellgard, M. and Bittles, A.H. (2008) Combining bioinformatics and population genetics in the study of Thalassaemia. In: International Conference on Medical and Community Genetics, 15 - 17 February, Chandigarh, India.

Black, M.L., Tangtulyangkul, P., Hunter, A., Bellgard, M. and Bittles, A.H. (2008) The Consang-Mashup Database System for the study of consanguinity. In: International Conference on Medical and Community Genetics, 15 - 17 February, Chandigarh, India.

Dayalan, S., Hunter, A., Macgregor, A., Takayama, N., Bellgard, M., Bacic, T. and Likic, V. (2008) Scientific data management and workflow system for geographically distributed virtual organization. In: eResearch Australasia Conference 2008, 28 September - 3 October 2008, Melbourne, Australia.

Hunter, A., Macgregor, A., Takayama, N., Smith, C., Wellington, C., Hammond, B., Albertyn, Z., Schibeci, D. and Bellgard, M. (2008) YABI: A rich internet application for simplifying -omics workflow creation, customisation and data analysis. In: Cambridge Healthtech Institute 2nd Annual Next Generation Sequencing: Platforms Applications and Case Studies, 23 - 24 April 2008, San Diego, CA.

Book Chapter

Roessner, U., Nahid, A., Chapman, B., Hunter, A. and Bellgard, M. (2011) Metabolomics – The combination of analytical biochemistry, biology, and informatics. In: Murray, M-Y, (ed.) Comprehensive Biotechnology (Second Edition). Academic Press, pp. 447-459.

This list was generated on Fri Aug 1 04:44:31 2014 IST.