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Publications: Haile, James

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Number of items: 36.

Journal Article

Willerslev, E., Davison, J., Moora, M., Zobel, M., Coissac, E., Edwards, M.E., Lorenzen, E.D., Vestergård, M., Gussarova, G., Haile, J., Craine, J., Gielly, L., Boessenkool, S., Epp, L.S., Pearman, P.B., Cheddadi, R., Murray, D., Bråthen, K.A., Yoccoz, N., Binney, H., Cruaud, C., Wincker, P., Goslar, T., Alsos, I.G., Bellemain, E., Brysting, A.K., Elven, R., Sønstebø, J.H., Murton, J., Sher, A., Rasmussen, M., Rønn, R., Mourier, T., Cooper, A., Austin, J., Möller, P., Froese, D., Zazula, G., Pompanon, F., Rioux, D., Niderkorn, V., Tikhonov, A., Savvinov, G., Roberts, R.G., MacPhee, R.D.E., Gilbert, M.T.P., Kjær, K.H., Orlando, L., Brochmann, C. and Taberlet, P. (2014) Fifty thousand years of Arctic vegetation and megafaunal diet. Nature, 506 (7486). pp. 47-51.

Tridico, S.R., Rigby, P., Kirkbride, K.P., Haile, J. and Bunce, M. (2014) Megafaunal split ends: microscopical characterisation of hair structure and function in extinct woolly mammoth and woolly rhino. Quaternary Science Reviews, 83 . pp. 68-75.

Haouchar, D., Haile, J., McDowell, M.C., Murray, D.C., White, N.E., Allcock, R.J.N., Phillips, M.J., Prideaux, G.J. and Bunce, M. (2014) Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocene–Holocene cave deposit on Kangaroo Island, South Australia. Quaternary Science Reviews, 84 . pp. 56-64.

Burgar, J.M., Murray, D.C., Craig, M.D., Haile, J., Houston, J., Stokes, V. and Bunce, M. (2014) Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed. Molecular Ecology, 23 (15). pp. 3605-3617.

Coghlan, M.L., White, N.E., Murray, D.C., Houston, J., Rutherford, W., Bellgard, M.I., Haile, J. and Bunce, M. (2013) Metabarcoding avian diets at airports: implications for birdstrike hazard management planning. Investigative Genetics, 4 (1).

Parducci, L., Matetovici, I., Fontana, S.L., Bennett, K.D., Suyama, Y., Haile, J., Kjaer, K.H., Larsen, N.K., Drouzas, A.D. and Willerslev, E. (2013) Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia. Molecular Ecology, 22 (13). pp. 3511-3524.

Murray, D.C., Haile, J., Dortch, J., White, N.E., Haouchar, D., Bellgard, M.I., Allcock, R.J., Prideaux, G.J. and Bunce, M. (2013) Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages. Scientific Reports, 3 .

Haouchar, D., Haile, J., Spencer, P.B.S. and Bunce, M. (2013) The identity of the Depuch Island rock-wallaby revealed through ancient DNA. Australian Mammalogy, 35 (1). pp. 101-106.

Oskam, C.L., Allentoft, M.E., Walter, R., Scofield, R.P., Haile, J., Holdaway, R.N., Bunce, M. and Jacomb, C. (2012) Ancient DNA analyses of early archaeological sites in New Zealand reveal extreme exploitation of moa (Aves: Dinornithiformes) at all life stages. Quaternary Science Reviews, 52 . pp. 41-48.

Haile, J. (2012) Ancient DNA extraction from soils and sediments. Methods in molecular biology, 840 . pp. 57-63.

White, N.E., Dawson, R., Coghlan, M.L., Tridico, S., Mawson, P.R., Haile, J. and Bunce, M. (2012) Application of STR markers in wildlife forensic casework involving Australian black-cockatoos (Calyptorhynchus spp.). Forensic Science International: Genetics, 6 (5). pp. 664-670.

Boessenkool, S., Epp, L.S., Haile, J., Bellemain, E.P., Edwards, M.E., Coissac, E., Willerslev, E. and Brochmann, C. (2012) Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Molecular Ecology, 21 (8). pp. 1806-1815.

Yoccoz, N.G., Bråthen, K.A., Gielly, L., Haile, J., Edwards, M.E., Goslar, T., Von Stedingk, H., Brysting, A.K., Coissac, E., Pompanan, F., Sonstebo, J.H., Miquel, C., Valentini, A., De Bello, F., Chave, J, Thuiller, W., Wincker, P., Cruaud, C., Gavory, F., Rasmussen, M., Gilbert, M.T.P., Orlando, L., Brochmann, C., Willerslev, E. and Taberlet, P. (2012) DNA from soil mirrors plant taxonomic and growth form diversity. Molecular Ecology, 21 (15). pp. 3647-3655.

Coghlan, M.L., Haile, J., Houston, J., Murray, D.C., White, N.E., Moolhuijzen, P., Bellgard, M.I. and Bunce, M. (2012) Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns. PLoS Genetics, 8 (4). e1002657.

Coghlan, M.L., White, N.E., Parkinson, L., Haile, J., Spencer, P.B.S. and Bunce, M. (2012) Egg forensics: An appraisal of DNA sequencing to assist in species identification of illegally smuggled eggs. Forensic Science International: Genetics, 6 (2). pp. 268-273.

Bellemain, E., Davey, M.L., Kauserud, H., Epp, L.S., Boessenkool, S., Coissac, E., Geml, J., Edwards, M., Willerslev, E., Gussarova, G., Taberlet, P., Haile, J. and Brochmann, C. (2012) Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environmental Microbiology, 15 (4). pp. 1176-1189.

Parducci, L., Jorgensen, T., Tollefsrud, M.M., Elverland, E., Alm, T., Fontana, S.L., Bennett, K.D., Haile, J., Matetovici, I., Suyama, Y., Edwards, M.E., Andersen, K., Rasmussen, M., Boessenkool, S., Coissac, E., Brochmann, C., Taberlet, P., Houmark-Nielsen, M., Larsen, N.K., Orlando, L., Gilbert, M.T.P., Kjaer, K.H., Alsos, I.G. and Willerslev, E. (2012) Glacial survival of boreal trees in northern Scandinavia. Science, 335 (6072). pp. 1083-1086.

Murray, D.C., Pearson, S.G., Fullagar, R., Chase, B.M., Houston, J., Atchison, J., White, N.E., Bellgard, M.I., Clarke, E., Macphail, M., Gilbert, M.T.P., Haile, J. and Bunce, M. (2012) High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens. Quaternary Science Reviews, 58 . pp. 135-145.

Jørgensen, T., Kjaer, K.H., Haile, J., Rasmussen, M., Boessenkool, S., Andersen, K., Coissac, E., Taberlet, P., Brochmann, C., Orlando, L., Gilbert, M.T.P. and Willerslev, E. (2012) Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding. Molecular Ecology, 21 (8). pp. 1980-1988.

Andersen, K., Bird, K.L., Rasmussen, M., Haile, J., Breuning-Madsen, H., Kjaer, K.H., Orlando, L., Gilbert, M.T.P. and Willerslev, E. (2012) Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity. Molecular Ecology, 21 (8). pp. 1966-1979.

Epp, L.S., Boessenkool, S., Bellemain, E.P., Haile, J., Esposito, A., Riaz, T., Erséus, C., Gusarov, V.I, Edwards, M.E., Johnsen, A., Stenøien, H.K., Hassel, K., Kauserud, H., Yoccoz, N.G., Bråthen, K.A., Willerslev, E., Taberlet, P., Coissac, E. and Brochmann, C. (2012) New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Molecular Ecology, 21 (8). pp. 1821-1833.

Jørgensen, T., Haile, J., Möller, P., Andreev, A., Boessenkool, S., Rasmussen, M., Kienast, F., Coissac, E., Taberlet, P., Brochmann, C., Bigelow, N.H., Andersen, K., Orlando, L., Gilbert, M.T.P. and Willerslev, E. (2012) A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability. Molecular Ecology, 21 (8). pp. 1989-2003.

Allentoft, M.E., Collins, M., Harker, D., Haile, J., Oskam, C.L., Hale, M.L., Campos, P. F., Samaniego, J. A., Gilbert, T.P.M., Willerslev, E., Zhang, G., Scofield, R. P., Holdaway, R. N. and Bunce, M. (2012) The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proceedings of the Royal Society B: Biological Sciences, 279 (1748). pp. 4724-4733.

Murray, D.C., Bunce, M., Cannell, B.L., Oliver, R., Houston, J., White, N.E., Barrero, R.A., Bellgard, M.I. and Haile, J. (2011) DNA-based faecal dietary analysis: A comparison of qPCR and high throughput sequencing approaches. PloS one, 6 (10). e25776.

Oskam, C.L., Jacomb, C., Allentoft, M.E., Walter, R., Paul Scofield, R., Haile, J., Holdaway, R.N. and Bunce, M. (2011) Molecular and morphological analyses of avian eggshell excavated from a late thirteenth century earth oven. Journal of Archaeological Science, 38 (10). pp. 2589-2595.

Bjørk, A.A., Björck, S., Cronholm, A., Haile, J., Ljung, Karl and Porter, C. (2011) Possible Late Pleistocene volcanic activity on Nightingale Island, South Atlantic Ocean, based on geoelectrical resistivity measurements, sediment corings and 14C dating. GFF, 133 (3-4). pp. 141-147.

Oskam, C.L., Haile, J., McLay, E., Rigby, P., Allentoft, M.E., Olsen, M.E., Bengtsson, C., Miller, G.H., Schwenninger, J.L., Jacomb, C., Walter, R., Baynes, A., Dortch, J., Parker-Pearson, M., Gilbert, M.T.P., Holdaway, R.N., Willerslev, E. and Bunce, M. (2010) Fossil avian eggshell preserves ancient DNA. Proceedings of the Royal Society B: Biological Sciences, 277 (1690). pp. 1991-2000.

Bunce, M., Worthy, T. H., Phillips, M. J., Holdaway, R. N., Willerslev, E., Haile, J., Shapiro, B., Scofield, R. P., Drummond, A., Kamp, P. J. J. and Cooper, A. (2009) The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proceedings of the National Academy of Sciences, 106 (49). pp. 20646-20651.

Haile, J., Holdaway, R., Oliver, K., Bunce, M., Gilbert, M. T. P., Nielsen, R., Munch, K., Ho, S. Y. W., Shapiro, B. and Willerslev, E. (2007) Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor? Molecular Biology and Evolution, 24 (4). pp. 982-989.

Willerslev, E., Cappellini, E., Boomsma, W., Nielsen, R., Hebsgaard, M. B., Brand, T. B., Hofreiter, M., Bunce, M., Poinar, H. N., Dahl-Jensen, D., Johnsen, S., Steffensen, J. P., Bennike, O., Schwenninger, J.-L., Nathan, R., Armitage, S., de Hoog, C.-J., Alfimov, V., Christl, M., Beer, J., Muscheler, R., Barker, J., Sharp, M., Penkman, K. E. H., Haile, J., Taberlet, P., Gilbert, M. T. P., Casoli, A., Campani, E. and Collins, M. J. (2007) Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science, 317 (5834). pp. 111-114.

Binladen, J., Wuif, C, Gilbert, M. T. P., Bunce, M., Barnett, R., Larson, G., Greenwood, A.D., Haile, J., Ho, S. Y. W., Hansen, A. J. and Willerslev, E. (2005) Assessing the fidelity of Ancient DNA sequences amplified from nuclear genes. Genetics, 172 (2). pp. 733-741.

Conference Item

Paparini, A., Yang, R., Gofton, A., Ng-Hublin, J., Bunce, M., Haile, J. and Ryan, U.M. (2014) Comparison of Sanger and Next Generation Sequencing (NGS) for typing Cryptosporidium isolates. In: 5th International Giardia & Cryptosporidium Conference, 27 - 30 May, Uppsala, Sweden.

Paparini, A., Bunce, M., Haile, J., White, N. and Ryan, U. (2013) A comparison of sequencing technologies for the screening of Cryptosporidium infections in biological samples. In: XXIV International Conference of the World Association for the Advancement of Veterinary parasitology (WAAVP), 25 - 29 August, Perth, Western Australia.

Burgar, J., Haile, J., Houston, J., Murray, D., Craig, M., Stokes, V. and Bunce, M. (2012) Who’s for dinner? Determining bat dietary preferences utilising high-throughput sequencing genetic analyses. In: Ecological Society of Australia, Annual Conference, 3 - 7 December, Melbourne, Australia.

Matetovici, I., Haile, J., Fontana, S.L. and Parducci, L. (2011) Molecular reconstruction of Holocene vegetation in Scandinavia based on pollen and sediment ancient DNA analysis. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Bunce, M., White, N., Allentoft, M., Oskam, C. and Haile, J. (2011) What can ancient DNA tell us about palaeoecology? Case studies from Australasia. In: Ecological Society of Australia, 2011 Annual conference, 21 - 25 November, Hobart, Australia.

This list was generated on Fri Nov 21 08:30:47 2014 GMT.