Publications: Cakir, Mehmet
Journal Article
Zhang, X-Q, Westcott, S., Panozzo, J., Cakir, M., Harasymow, S., Tarr, A., Broughton, S., Lance, R. and Li, C. (2012) Comparative analysis of Australian and Canadian barleys for seed dormancy and malting quality. Euphytica, 188 (1). pp. 103-111.
Punchana, S., Cakir, M., Rerkasem, B. and Jamjod, S. (2012) Mapping the Bod2 gene associated with boron efficiency in wheat. ScienceAsia, 38 (3). pp. 235-243.
Ren, X., Li, C., Cakir, M., Zhang, W., Grime, C., Zhang, X-Q, Broughton, S, Sun, D. and Lance, R. (2012) A quantitative trait locus for long photoperiod response mapped on chromosome 4H in barley. Molecular Breeding, 30 (2). pp. 1121-1130.
Jia, Q., Zhang, X-Q, Westcott, S., Broughton, S., Cakir, M., Yang, J., Lance, R. and Li, C. (2011) Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley. Theoretical and Applied Genetics, 122 (8). pp. 1451-1460.
Cakir, M., Gupta, S., Li, C., Hayden, M., Mather, D.E., Ablett, G.A., Platz, G.J., Broughton, S., Chalmers, K.J., Loughman, R., Jones, M.G.K. and Lance, R.C.M. (2011) Genetic mapping and QTL analysis of disease resistance traits in the barley population Baudin x AC Metcalfe. Crop & Pasture Science, 62 (2). pp. 152-161.
Gupta, S., Li, C., Loughman, R., Cakir, M., Westcott, S. and Lance, R. (2011) Identifying genetic complexity of 6H locus in barley conferring resistance to Pyrenophora teres f. teres. Plant Breeding, 130 (4). pp. 423-429.
Paux, E., Faure, S., Choulet, F., Roger, D., Gauthier, V., Martinant, J-P, Sourdille, P., Balfourier, F., Le Paslier, M-C, Chauveau, A., Cakir, M., Gandon, B. and Feuillet, C. (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnology Journal, 8 (2). pp. 196-210.
Ricciardi, M., Tocho, E., Tacaliti, M.S., Vasicek, A., Giménez, D.O., Paglione, A., Simmonds, J., Snape, J.W., Cakir, M. and Castro, A.M. (2010) Mapping quantitative trait loci for resistance against Russian wheat aphid (Diuraphis noxia) in wheat (Triticum aestivum L.). Crop & Pasture Science, 61 (12). pp. 970-977.
Gupta, S., Li, C.D., Loughman, R., Cakir, M., Platz, G., Westcott, S., Bradley, J., Broughton, S. and Lance, R. (2010) Quantitative trait loci and epistatic interactions in barley conferring resistance to net type net blotch (Pyrenophora teres f. teres) isolates. Plant Breeding, 129 (4). pp. 362-268.
Collard, B., Mace, E., McPhail, M., Wenzl, P., Cakir, M., Fox, G., Poulsen, D. and Jordan, D. (2009) How accurate are the marker orders in crop linkage maps generated from large marker datasets? Crop and Pasture Science, 60 (4). pp. 362-372.
Setter, T. L., Waters, I., Sharma, S.K., Singh, K.N., Kulshreshtha, N., Yaduvanshi, N.P.S., Ram, P.C., Singh, B.N., Rane, J., McDonald, G., Khabaz-Saberi, H., Biddulph, T.B., Wilson, R., Barclay, I., McLean, R. and Cakir, M. (2008) Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils. Annals of Botany, 103 (2). pp. 221-235.
Zhang, X-Q, Li, C., Tay, A., Lance, R., Mares, D., Cheong, J., Cakir, M., Ma, J. and Appels, R. (2008) A new PCR-based marker on chromosome 4AL for resistance to pre-harvest sprouting in wheat (Triticum aestivum L.). Molecular Breeding, 22 (2). pp. 227-236.
Fox, G., Osborne, Brian, Bowman, Jan, Kelly, A., Cakir, M., Poulsen, D., Inkerman, Andy and Henry, Robert (2007) Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness. Journal of Cereal Science, 46 (1). pp. 82-92.
Fox, G.P., Kelly, A.M., Cakir, M., Bloustein, G., Poulsen, D.M.E., Inkerman, P.A. and Henry, R.J. (2006) Genetic Impacts of the Hull on Barley Grain Quality. Journal of the Institute of Brewing, 112 (2). pp. 101-107.
Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species. Genome, 49 (6). pp. 689-699.
Nelson, M.N., Phan, H.T.T., Ellwood, S.R., Moolhuijzen, P.M., Hane, J.K., Williams, A., O‘Lone, C.E., Fosu-Nyarko, J., Scobie, M., Cakir, M., Jones, M.G.K., Bellgard, M., Książkiewicz, M., Wolko, B., Barker, S., Oliver, R.P. and Cowling, W.A. (2006) The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula. Theoretical and Applied Genetics, 113 (2). pp. 225-238.
Wenzl, P., Li, H., Carling, J., Zhou, M., Raman, H., Paul, E., Hearnden, P., Maier, C., Xia, L., Caig, V., Ovesná, J., Cakir, M., Poulsen, D., Wang, J., Raman, R., Smith, K.P., Muehlbauer, G.J., Chalmers, K.J., Kleinhofs, A., Huttner, E. and Kilian, A. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics, 7 (1).
Raman, H., Zhang, K., Cakir, M., Appels, R., Garvin, D.F., Maron, L.G., Kochian, L.V., Moroni, J.S., Raman, R., Imtiaz, M., Drake-Brockman, F., Waters, I., Martin, P., Sasaki, T., Yamamoto, Y., Matsumoto, H., Hebb, D.M., Delhaize, E. and Ryan, P.R. (2005) Molecular characterization and mapping ofALMT1, the aluminium-tolerance gene of bread wheat (Triticum aestivumL.). Genome, 48 (5). pp. 781-791.
Cakir, M., Gupta, S., Platz, G.J., Ablett, G.A., Loughman, R., Emebiri, L.C., Poulsen, D., Li, C.D., Lance, R.C.M., Galwey, N.W., Jones, M.G.K. and Appels, R. (2003) Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1369-1377.
Conference Paper
Gupta, S., Li, C.D., Cakir, M. and Loughman, R. (2011) Mapping and allelic tests depicting recombinants on 6H locus conferring resistance to Pyrenophora teres f. teres isolates from Australia. In: 4th International Workshop on Barley Leaf Blights, 27 - 29 June, Dundee, Scotland.
Gupta, S., Limadinata, V., Li, C., Lance, R., Loughman, R., Cakir, M. and Appels, R. (2005) Identification of novel resistances against spot-type net blotch (Pyrenophora teres f. maculata) in Canadian barleys. In: 12th Australian Barley Technical Symposium, 11 - 14 September 2005, Hobart, Tasmania.
Moolhuijzen, P., Cakir, M., Madsen, L., Li, D., Hunter, A., Schibeci, D., Francki, M., Appels, R., Sandal, N. and Bellgard, M. (2004) Detailed comparative genomics and novel cross-species marker identification in Lupin and pasture legume species: Application of the legumeDB bioinformatics resources. In: Plant Genomics European Meeting , 22 - 25 September 2004, Lyon, France.
Gupta, S., Wielinga, C., Li, C., Cakir, M., Platz, G., Loughman, R., Lance, R. and Appels, R. (2004) Gene distribution and SSR markers linked with net type net blotch resistance in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic.
Cakir, M., Wallwork, H., Gupta, S., Moody, D., Williams, K. and Li, C. (2004) Identification of a new adult plant resistance gene for scald (Rhynchosporium secalis) in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic.
Cakir, M., Appels, R., Francki, M., Li, C., Carter, M., Gupta, S., Loughman, R., Lance, R., Wilson, R., McLean, R. and Barclay, I. (2003) Candidate gene markers for using in wheat and barley breeding programs. In: XIX International Congress of Genetics, 6 - 11 July, Melbourne, Australia.
Gupta, S., Loughman, R., Cakir, M., Platz, G., Li, C., Lance, R., Jones, M. and Appels, R. (2002) Genetic and molecular studies of seedling and adult plant resistance in barley against Pyrenophora teres f. teres. In: 2nd International Barley Leaf Blight Workshop , 7 - 11 April, ICARDA, Aleppo, Syria.
Conference Item
Li, C., Lance, R., Tarr, A., Harasymow, S., Gupta, S., Cakir, M., Jones, M.G.K. and Appels, R. (2006) Marker assisted breeding in barley: the winners and the losers. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand .
Gupta, S., Li, C., Cakir, M., Loughman, R., Lance, R., Appels, R. and Jones, M.G.K. (2006) Resistances for leaf blight diseases in barley populations. In: 3rd International Workshop on Barley Leaf Blights, 23 - 27 July, Edmonton, AB, Canada.
Others
Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) Erratum: LegumeDB bioinformatics resource: comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species. Genome, 49 (9). pp. 1206-1207.
