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Publications: Western Australian State Agricultural Biotechnology Centre

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Journal Article

Ablett, G.A., Karakousis, A., Banbury, L., Cakir, M., Holton, T.A., Langridge, P. and Henry, R.J. (2003) Application of SSR markers in the construction of Australian barley genetic maps. Australian Journal of Agricultural Research, 54 (12). pp. 1187-1195.

Amulaka, F.O., Maling’a, J.N., Cakir, M. and Mulwa, R.M.S. (2013) Development and characterization of wheat germplasm with combined resistance to Russian wheat aphid and stem rust (Race “Ug99”) in Kenya. American Journal of Plant Sciences, 4 (4). pp. 767-773.

Amulaka, F.O., Maling’a, J.N., Pathak, R.S., Cakir, M. and Mulwa, R.M.S. (2013) Yield evaluation of a wheat line with combined resistance to russian wheat aphid and stem rust race “Ug99” in Kenya. American Journal of Plant Sciences, 4 (7). pp. 1494-1499.

Ariyarathna, H.A.C.K., Ul-Haq, T., Colmer, T.D. and Francki, M.G. (2014) Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na+ and K+ status. BMC Plant Biology, 14 (1).

Balázs, G., Tömösközi, S., Harasztos, A., Németh, A., Tamás, V., Morgounov, Á., Belan, I., Ma, W. and Békés, F. (2012) Advantages and limitation of lab-on-a-chip technique in the analysis of wheat proteins. Cereal Research Communications, 40 (4). pp. 562-572.

Baracskai, I., Balázs, G., Liu, L., Ma, W., Oszvald, M., Newberry, M., Tömösközi, S., Láng, L., Bedő, Z. and Békés, F. (2011) A retrospective analysis of HMW and LMW glutenin alleles of cultivars bred in Martonvásár, Hungary. Cereal Research Communications, 39 (2). pp. 225-236.

Bartlem, D., Jones, M.G.K. and Heinrich, T. (1998) Molecular aspects of plant-nematode interactions and their exploitation for resistance strategies. Australasian Plant Pathology, 27 (2). p. 59.

Bartlem, D.G., Jones, M.G.K. and Hammes, U.Z. (2014) Vascularization and nutrient delivery at root-knot nematode feeding sites in host roots. Journal of Experimental Botany, 65 (7). pp. 1789-1798.

Bassami, M.R., Ypelaar, I., Berryman, D., Wilcox, G.E. and Raidal, S.R. (2001) Genetic diversity of beak and feather disease virus detected in psittacine species in Australia. Virology, 279 (2). pp. 392-400.

Bayliss, K.L., Saqib, M., Dell, B., Jones, M.G.K. and Hardy, G.E.St.J. (2005) First record of 'Candidatus Phytoplasma australiense' in Paulownia trees. Australasian Plant Pathology, 34 (1). pp. 123-124.

Bian, M., Waters, I., Broughton, S., Zhang, X-Q, Zhou, M., Lance, R., Sun, D. and Li, C. (2013) Development of gene-specific markers for acid soil/aluminium tolerance in barley (Hordeum vulgare L.). Molecular Breeding, 32 (1). pp. 155-164.

Bovill, W., Ma, W., Ritter, K., Collard, B.C.Y., Davis, M., Wildermuth, G.B. and Sutherland, M.W. (2006) Identification of novel QTL for resistance to crown rot in the doubled haploid wheat population 'W21MMT70' x 'Mendos'. Plant Breeding, 125 (6). pp. 538-543.

Boyd, W.J.R., Li, C.D., Grime, C.R., Cakir, M., Potipibool, S., Kaveeta, L., Men, S., Kamali, M.R.J., Barr, A.R., Moody, D.B., Lance, R.C.M., Logue, S.J., Raman, H. and Read, B.J. (2003) Conventional and molecular genetic analysis of factors contributing to variation in the timing of heading among spring barley (Hordeum vulgare L.) genotypes grown over a mild winter growing season. Australian Journal of Agricultural Research, 54 (12). pp. 1277-1301.

Breen, J., Li, D., Dunn, D.S., Bekes, F., Kong, X., Zhang, J., Jia, J., Wicker, T., Mago, R., Ma, W., Bellgard, M. and Appels, R. (2010) Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain. BMC Plant Biology, 10 (1). p. 99.

Brereton, H.M., Chamberlain, D., Yang, R., Tea, M., McNeil, S., Coster, D.J. and Williams, K.A. (2007) Single chain antibody fragments for ocular use produced at high levels in a commercial wheat variety. Journal of Biotechnology, 129 (3). pp. 539-546.

Briney, A., Wilson, R., Potter, R.H., Barclay, I., Crosbie, G., Appels, R. and Jones, M.G.K. (1998) A PCR-based marker for selection of starch and potential noodle quality in wheat. Molecular Breeding, 4 (5). pp. 427-433.

Cakir, M., Bellgard, M., Appels, R. and Francki, M. (2004) Looking through genomics: Concepts and technologies for plant and animal genomics. Functional & Integrative Genomics, 4 (2). pp. 71-73.

Cakir, M., Gupta, S., Li, C., Hayden, M., Mather, D.E., Ablett, G.A., Platz, G.J., Broughton, S., Chalmers, K.J., Loughman, R., Jones, M.G.K. and Lance, R.C.M. (2011) Genetic mapping and QTL analysis of disease resistance traits in the barley population Baudin x AC Metcalfe. Crop & Pasture Science, 62 (2). pp. 152-161.

Cakir, M., Gupta, S., Platz, G.J., Ablett, G.A., Loughman, R., Emebiri, L.C., Poulsen, D., Li, C.D., Lance, R.C.M., Galwey, N.W., Jones, M.G.K. and Appels, R. (2003) Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1369-1377.

Cakir, M., Poulsen, D., Galwey, N.W., Ablett, G.A., Chalmers, K.J., Platz, G.J., Park, R.F., Lance, R.C.M., Panozzo, J.F., Read, B.J., Moody, D.B., Barr, A.R., Johnston, P., Li, C.D., Boyd, W.J.R., Grime, C.R., Appels, R., Jones, M.G.K. and Langridge, P. (2003) Mapping and QTL analysis of the barley population Tallon × Kaputar. Australian Journal of Agricultural Research, 54 (12). pp. 1155-1162.

Cakir, M., Spackman, M., Wellings, C.R., Galwey, N.W., Moody, D.B., Poulsen, D., Ogbonnaya, F.C. and Vivar, H. (2003) Molecular mapping as a tool for pre-emptive breeding for resistance to the exotic barley pathogen, Puccinia striiformis f. sp. hordei. Australian Journal of Agricultural Research, 54 (12). pp. 1351-1357.

Carnegie, P.R. (1997) Phage display of antigens. Australian Journal of Medical Science, 4 . pp. 131-132.

Charles, M., Belcram, H., Just, J., Huneau, C., Viollet, A., Couloux, A., Segurens, B., Carter, M., Huteau, V., Coriton, O., Appels, R., Samain, S. and Chalhoub, B. (2008) Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics, 180 (2). pp. 1071-1086.

Chen, G.X., Lv, D.W., Li, W.D., Subburaj, S., Yu, Z.T., Wang, Y.J., Li, X.H., Wang, K., Ye, X.G., Ma, W. and Yan, Y.M. (2013) The α-gliadin genes from Brachypodium distachyon L. provide evidence for a significant gap in the current genome assembly. Functional & Integrative Genomics, 14 (1). pp. 149-160.

Cogan, N.O.I., Smith, K.F., Yamada, T., Francki, M.G., Vecchies, A.C., Jones, E.S., Spangenberg, G.C. and Forster, J.W. (2005) QTL analysis and comparative genomics of herbage quality traits in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics, 110 (2). pp. 364-380.

Collard, B., Mace, E., McPhail, M., Wenzl, P., Cakir, M., Fox, G., Poulsen, D. and Jordan, D. (2009) How accurate are the marker orders in crop linkage maps generated from large marker datasets? Crop and Pasture Science, 60 (4). pp. 362-372.

Coutts, B.A., Kehoe, M.A., Webster, C.G., Wylie, S.J. and Jones, R.A.C. (2011) Indigenous and introduced potyviruses of legumes and Passiflora spp. from Australia: biological properties and comparison of coat protein nucleotide sequences. Archives of Virology, 156 (10). pp. 1757-1774.

Coutts, B.A., Kehoe, M.A., Webster, C.G., Wylie, S.J. and Jones, R.A.C. (2011) Zucchini yellow mosaic virus: biological properties, detection procedures and comparison of coat protein gene sequences. Archives of Virology, 156 (12). pp. 2119-2131.

Crawford, A.C. and Francki, M.G. (2013) Chromosomal location of wheat genes of the carotenoid biosynthetic pathway and evidence for a catalase gene on chromosome 7A functionally associated with flour b* colour variation. Molecular Genetics and Genomics, 288 (10). pp. 483-493.

Crawford, A.C. and Francki, M.G. (2013) Lycopene-ε-cyclase (e-LCY3A) is functionally associated with quantitative trait loci for flour b* colour on chromosome 3A in wheat (Triticum aestivum L.). Molecular Breeding, 31 (3). pp. 737-741.

Crawford, A.C., Stefanova, K., Lambe, W., McLean, R., Wilson, R., Barclay, I. and Francki, M.G. (2011) Functional relationships of phytoene synthase 1 alleles on chromosome 7A controlling flour colour variation in selected Australian wheat genotypes. Theoretical and Applied Genetics, 123 (1). pp. 95-108.

Dai, H., Zhang, X-Q, Harasymow, S., Roumeliotis, S., Broughton, S., Eglinton, J., Wu, F. and Li, C. (2014) MALDI-TOF mass spectrometry provides an efficient approach to monitoring protein modification in the malting process. International Journal of Mass Spectrometry, 371 . pp. 8-16.

Davies, J.M., Robinson, W.F. and Carnegie, P.R. (1997) Antibody reactivity to the transmembrane protein of the caprine arthritis encephalitis virus correlates with severity of arthritis: no evidence for the involvement of epitope mimicry. Veterinary Immunology and Immunopathology, 60 (1-2). pp. 131-147.

Dietzgen, R.G., Twin, J., Talty, J., Selladurai, S., Carroll, M.L., Coutts, B.A., Berryman, D.I. and Jones, R.A.C. (2005) Genetic variability of Tomato spotted wilt virus in Australia and validation of real time RT-PCR for its detection in single and bulked leaf samples. Annals of Applied Biology, 146 (4). pp. 517-530.

Domingos, S.S., Dallas, S., Skillman, L., Felstead, S. and Ho, G. (2011) Nitrogen removal and ammonia-oxidising bacteria in a vertical flow constructed wetland treating inorganic wastewater. Water Science & Technology, 64 (3). p. 587.

Dong, K., Ge, P., Ma, C., Wang, K., Yan, X., Gao, L., Li, X., Liu, J., Ma, W. and Yan, Y. (2012) Albumin and globulin dynamics during grain development of elite Chinese wheat cultivar Xiaoyan 6. Journal of Cereal Science, 56 (3). pp. 615-622.

Donini, P., Li, X., Zhang, Y., Gao, L., Wang, A., Ji, K., He, Z., Appels, R., Ma, W. and Yan, Y. (2007) Molecular cloning, heterologous expression, and phylogenetic analysis of a novel y-type HMW glutenin subunit gene from the G genome ofTriticum timopheevi. Genome, 50 (12). pp. 1130-1140.

Dwyer, G.I., Gibbs, M.J., Gibbs, A.J. and Jones, R.A.C. (2007) Wheat streak mosaic virus in Australia: Relationship to isolates from the Pacific Northwest of the USA and its dispersion via seed transmission. Plant Disease, 91 (2). pp. 164-170.

Dwyer, G.I., Njeru, R., Williamson, S., Fosu-Nyarko, J., Hopkins, R., Jones, R.A.C., Waterhouse, P.M. and Jones, M.G.K. (2003) The complete nucleotide sequence of Subterranean clover mottle virus. Archives of Virology, 148 (11). pp. 2237-2247.

Edwards, M.A., Loxley, R.A., Williams, A., Connor, M. and Phillips, J.K. (2007) Lack of functional expression of NMDA receptors in PC12 cells. NeuroToxicology, 28 (4). pp. 876-885.

Ehsanpour, A.A. and Jones, M.G.K. (1996) Glucuronidase expression in transgenic tobacco roots with a Parasponia promoter on infection with Meloidogyne javanica. Journal of Nematology, 28 (4). pp. 407-413.

Ehsanpour, A.A. and Jones, M.G.K. (2001) Plant regeneration from mesophyll protoplasts of potato (Solanum Tuberosum L.) cultivar delaware using silver thiosulfate (STS). Journal of Sciences of the Islamic Republic of Iran, 12 (2). pp. 103-110.

Ellwood, S.R., Kamphuis, L.G. and Oliver, R.P. (2006) Identification of Sources of Resistance toPhoma medicaginisIsolates inMedicago truncatulaSARDI Core Collection Accessions, and Multigene Differentiation of Isolates. Phytopathology, 96 (12). pp. 1330-1336.

Fosu-Nyarko, J., Jones, R.A.C., Smith, L.J., Jones, M.G.K. and Dwyer, G.I. (2002) Host range and symptomatology of Subterranean clover mottle virus in alternative pasture, forage and crop legumes. Australasian Plant Pathology, 31 (4). pp. 345-350.

Fox, G.P., Kelly, A.M., Cakir, M., Bloustein, G., Poulsen, D.M.E., Inkerman, P.A. and Henry, R.J. (2006) Genetic Impacts of the Hull on Barley Grain Quality. Journal of the Institute of Brewing, 112 (2). pp. 101-107.

Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M. and Appels, R. (2004) Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Functional & Integrative Genomics, 4 (2). pp. 118-130.

Francki, M.G. (2013) Improving Stagonospora nodorum resistance in wheat: A review. Crop Science, 53 (2). pp. 355-365.

Francki, M.G., Walker, E., Crawford, A.C., Broughton, S., Ohm, H.W., Barclay, I., Wilson, R.E. and McLean, R. (2009) Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers. Molecular Genetics and Genomics, 281 (2). pp. 181-191.

Friesen, T.L., Stukenbrock, E.H., Liu, Z., Meinhardt, S., Ling, H., Faris, J.D., Rasmussen, J.B., Solomon, P.S., McDonald, B.A. and Oliver, R.P. (2006) Emergence of a new disease as a result of interspecific virulence gene transfer. Nature Genetics, 38 (8). pp. 953-956.

Fukumoto, T., Nakamura, M., Wylie, S.J., Chiaki, Y. and Iwai, H. (2013) Complete nucleotide sequence of a new isolate of passion fruit woodiness virus from Western Australia. Archives of Virology, 158 (8). pp. 1821-1824.

Gao, L., Ma, W., Chen, J., Wang, K., Li, J., Wang, S., Bekes, F., Appels, R. and Yan, Y. (2010) Characterization and Comparative Analysis of Wheat High Molecular Weight Glutenin Subunits by SDS-PAGE, RP-HPLC, HPCE, and MALDI-TOF-MS. Journal of Agricultural and Food Chemistry, 58 (5). pp. 2777-2786.

Gao, L., Wang, A., Li, X., Dong, K., Wang, K., Appels, R., Ma, W. and Yan, Y. (2009) Wheat quality related differential expressions of albumins and globulins revealed by two-dimensional difference gel electrophoresis (2-D DIGE). Journal of Proteomics, 73 (2). pp. 279-296.

Ge, P., Hao, P., Cao, M., Guo, G., Lv, D., Subburaj, S., Li, X., Yan, X., Xiao, J., Ma, W. and Yan, Y. (2013) iTRAQ-based quantitative proteomic analysis reveals new metabolic pathways of wheat seedling growth under hydrogen peroxide stress. Proteomics, 13 (20). pp. 3046-3058.

Glaberman, S., Sulaiman, I., Bern, C., Levior, J., Peng, M.M., Morgan-Ryan, U.M., Gilman, R., Lal, A.A. and Xiao, L. (2001) A Multilocus Genotypic Analysis of Cryptosporidium meleagridis. The Journal of Eukaryotic Microbiology, 48 (s1). 19s-22s.

Gong, X., Westcott, S., Zhang, X-Q, Yan, G., Lance, R., Zhang, G., Sun, D. and Li, C. (2013) Discovery of novel Bmy1 alleles increasing β-amylase activity in Chinese landraces and Tibetan wild barley for improvement of malting quality via MAS. PLoS ONE, 8 (9). e72875.

Goto, D.B., Fosu-Nyarko, J., Sakuma, F., Sadler, J., Flottman-Reid, M., Uehara, T., Kondo, N., Yamaguchi, J. and Jones, M.G.K. (2010) In planta observation of live fluorescent plant endoparasitic nematodes during early stages of infection. Nematological Research, 40 (1). pp. 15-19.

Gregg, K., Hamdorf, B., Henderson, K., Kopecny, J. and Wong, C.M. (1998) Genetically modified ruminal bacteria protect sheep from fluoroacetate poisoning. Applied and Environmental Microbiology, 64 (9). pp. 3496-3498.

Gummer, J., Banazis, M., Maker, G., Solomon, P., Oliver, R. and Trengove, R. (2009) Use of mass spectrometry for metabolite profiling and metabolomics. Australian Biochemist, 40 (3). pp. 5-8.

Guo, G., Ge, P., Ma, C., Li, X., Lv, D., Wang, S., Ma, W. and Yan, Y. (2012) Comparative proteomic analysis of salt response proteins in seedling roots of two wheat varieties. Journal of Proteomics, 75 (6). pp. 1867-1885.

Gupta, D., Taylor, P.W.J., Inder, P., Phan, H.T.T., Ellwood, S.R., Mathur, P.N., Sarker, A. and Ford, R. (2012) Integration of EST-SSR markers of Medicago truncatula into intraspecific linkage map of lentil and identification of QTL conferring resistance to ascochyta blight at seedling and pod stages. Molecular Breeding, 30 (1). pp. 429-439.

Gupta, S., Li, C., Loughman, R., Cakir, M., Westcott, S. and Lance, R. (2011) Identifying genetic complexity of 6H locus in barley conferring resistance to Pyrenophora teres f. teres. Plant Breeding, 130 (4). pp. 423-429.

Gupta, S., Li, C.D., Loughman, R., Cakir, M., Platz, G., Westcott, S., Bradley, J., Broughton, S. and Lance, R. (2010) Quantitative trait loci and epistatic interactions in barley conferring resistance to net type net blotch (Pyrenophora teres f. teres) isolates. Plant Breeding, 129 (4). pp. 362-268.

Gupta, S. and Loughman, R. (2001) Current virulence of Pyrenophora teres on barley in Western Australia. Plant Disease, 85 (9). pp. 960-966.

Gupta, S., Loughman, R., D'Antuono, M. and Bradley, J. (2011) Characterisation and diversity of Pyrenophora teres f. maculata isolates in Western Australia. Australasian Plant Pathology, 41 (1). pp. 31-40.

Gupta, S., Loughman, R., Platz, G.J. and Lance, R.C.M. (2003) Resistance in cultivated barleys to Pyrenophora teres f. teres and prospects of its utilisation in marker identification and breeding. Australian Journal of Agricultural Research, 54 (12). pp. 1379-1386.

Gustafson, J.P., Francki, M.G., Walker, E., Forster, J.W., Spangenberg, G. and Appels, R. (2006) Fructosyltransferase and invertase genes evolved by gene duplication and rearrangements: rice, perennial ryegrass, and wheat gene families. Genome, 49 (9). pp. 1081-1091.

Gustafson, P., Anugrahwati, D.R., Shepherd, K.W., Verlin, D.C., Zhang, P., Mirzaghaderi, G., Walker, E., Francki, M.G. and Dundas, I.S. (2008) Isolation of wheat–rye 1RS recombinants that break the linkage between the stem rust resistance geneSrRand secalin. Genome, 51 (5). pp. 341-349.

Han, C, Yu, Z., Feng, S., Lv, D., Yan, X., Chen, G., Li, X., Ma, W. and Yan, Y. (2013) Applications of capillary electrophoresis for rapidly separating and characterizing water-soluble proteins of wheat grains. Cereal Research Communications, 41 (4). pp. 601-612.

He, X.Y., He, Z.H., Ma, W., Appels, R. and Xia, X.C. (2009) Allelic variants of phytoene synthase 1 (Psy1) genes in Chinese and CIMMYT wheat cultivars and development of functional markers for flour colour. Molecular Breeding, 23 (4). pp. 553-563.

Heinrich, T., Washer, S., Marshall, J., Jones, M.G.K. and Potter, R.H. (1997) Subtractive hybridization of cDNA from small amounts of plant tissue. Molecular Biotechnology, 8 (1). pp. 7-12.

Heitman, T.L., Frederick, L.M., Viste, J.R., Guselle, N.J., Morgan, U.M., Thompson, R.C.A. and Olson, M.E. (2002) Prevalence of Giardia and Cryptosporidium and characterization of Cryptosporidium spp. isolated from wildlife, human, and agricultural sources in the North Saskatchewan River Basin in Alberta, Canada. Canadian Journal of Microbiology, 48 (6). pp. 530-541.

Hua , L., Sivasithamparam, K., Barbetti, M.J., Wylie, S.J. and Kuo, J. (2008) Cytological responses in the hypersensitive reaction in cotyledon and stem tissues of Brassica napus after infection by Leptosphaeria maculans. Journal of General Plant Pathology, 74 (2). pp. 120-124.

Hutangura, P., Jones, M.G.K. and Heinrich, T. (1998) Optimisation of culture conditions for in vitro infection of tomato with the root-knot nematode Meloidogyne javanica. Australasian Plant Pathology, 27 (2). p. 84.

Hutangura, P., Mathesius, U., Jones, M.G.K. and Rolfe, B.G. (1999) Auxin induction is a trigger for root gall formation caused by root-knot nematodes in white clover and is associated with the activation of the flavonoid pathway. Australian Journal of Plant Physiology, 26 (3). pp. 221-231.

Islam, S., Ma, W., Yan, G., Gao, L. and Appels, R. (2011) Differential recovery of lupin proteins from the gluten matrix in lupin–wheat bread as revealed by mass spectrometry and two-dimensional electrophoresis. Journal of Agricultural and Food Chemistry, 59 (12). pp. 6696-6704.

Islam, S., Yan, G., Appels, R. and Ma, W. (2012) Comparative proteome analysis of seed storage and allergenic proteins among four narrow-leafed lupin cultivar. Food Chemistry, 135 (3). pp. 1230-1238.

Jia, Q., Zhang, J., Westcott, S., Zhang, X-Q, Bellgard, M., Lance, R. and Li, C. (2009) GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional & Integrative Genomics, 9 (2). pp. 255-262.

Jia, Q., Zhang, X-Q, Westcott, S., Broughton, S., Cakir, M., Yang, J., Lance, R. and Li, C. (2011) Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley. Theoretical and Applied Genetics, 122 (8). pp. 1451-1460.

Jiang, C., Pei, Y-H, Zhang, Y., Li, X., Yao, D., Yan, Y., Ma, W., Hsam, S.L.K. and Zeller, F. J. (2008) Molecular cloning and characterization of four novel LMW glutenin subunit genes from Aegilops longissima, Triticum dicoccoides and T. zhukovskyi. Hereditas, 145 (2). pp. 92-98.

Jin, X., Harasymow, S., Bonnardeaux, Y., Tarr, A., Appels, R., Lance, R., Zhang, G. and Li, C. (2011) QTLs for malting flavour component associated with pre-harvest sprouting susceptibility in barley (Hordeum vulgare L.). Journal of Cereal Science, 53 (2). pp. 149-153.

Jones, J.T., Haegeman, A., Danchin, E.G.J., Gaur, H.S., Helder, J., Jones, M.G.K., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J.E., Wesemael, W.M.L. and Perry, R.N. (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Molecular Plant Pathology, 14 (9). pp. 946-961.

Jones, M. (2003) The State WA Agricultural Biotechnology Centre (SABC) - The engine that drives agricultural biotechnology in Western Australia. Australasian Biotechnology, 13 (2). pp. 40-41.

Jones, M.G.K. (2010) Agribiotechnology for the ASIA pacific region. Asia Pacific Journal of Molecular Biology and Biotechnology, 18 (1). pp. 7-14.

Jones, M.G.K. and Fosu-Nyarko, J. (2014) Molecular biology of root lesion nematodes (Pratylenchusspp.) and their interaction with host plants. Annals of Applied Biology, 164 (2). pp. 163-181.

Jones, R.A.C., Coutts, B.A., Mackie, A.E. and Dwyer, G.I. (2005) Seed transmission of Wheat streak mosaic virus shown unequivocally in wheat. Plant Disease, 89 (10). pp. 1048-1050.

Jones, R.A.C. and Dwyer, G.I. (2007) Detection of Sweet potato chlorotic fleck virus andSweet potato feathery mottle virus– strain O in Australia. Australasian Plant Pathology, 36 (6). pp. 591-594.

Kaur, S., Francki, M.G. and Forster, J.W. (2011) Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species. Plant Biotechnology Journal, 10 (2). pp. 125-138.

Kovács, A., Rakszegi, M., Láng, L., Ma, W., Békés, F. and Bedő, Z. (2013) Application of a rapid electrophoresis technique analysing the glutenin subunit composition of wheat genotypes. Cereal Research Communications, 41 (3). pp. 468-481.

Lan, P., Li, W.F., Wang, H.Z. and Ma, W. (2010) Characterization, sub-cellular localization and expression profiling of the isoprenylcysteine methylesterase gene family in Arabidopsis thaliana. BMC Plant Biology, 10 (1). p. 212.

Lee, E., Wylie, S.J. and Jones, M.G.K. (2010) First report of 'Candidatus Phytoplasma aurantifolia' associated with severe stunting and necrosis on the invasive weed Pelargonium capitatum in Western Australia. Plant Disease, 94 (10). p. 1264.

Lei, Z.S., Gale, K.R., He, Z.H., Gianibelli, C., Larroque, O., Xia, X.C., Butow, B.J. and Ma, W. (2006) Y-type gene specific markers for enhanced discrimination of high-molecular weight glutenin alleles at the Glu-B1 locus in hexaploid wheat. Journal of Cereal Science, 43 (1). pp. 94-101.

Li, C., Ni, P., Francki, M., Hunter, A., Zhang, Y., Schibeci, D., Li, H., Tarr, A., Wang, J., Cakir, M., Yu, J., Bellgard, M., Lance, R. and Appels, R. (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Functional & Integrative Genomics, 4 (2). pp. 84-93.

Li, C.D., Cakir, M. and Lance, R. (2009) Genetic improvement of malting quality through conventional breeding and Marker-assisted selection. Advance Topics in Science and Technology in China . pp. 260-292.

Li, C.D., Lance, R.C.M., Collins, H.M., Tarr, A., Roumeliotis, S., Harasymow, S., Cakir, M., Fox, G.P., Grime, C.R., Broughton, S., Young, K.J., Raman, H., Barr, A.R., Moody, D.B. and Read, B.J. (2003) Quantitative trait loci controlling kernel discoloration in barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1251-1259.

Li, C.D., Tarr, A., Lance, R.C.M., Harasymow, S., Uhlmann, J., Westcot, S., Young, K.J., Grime, C.R., Cakir, M., Broughton, S. and Appels, R. (2003) A major QTL controlling seed dormancy and pre-harvest sprouting/grain α-amylase in two-rowed barley (Hordeum vulgare L.). Australian Journal of Agricultural Research, 54 (12). pp. 1303-1313.

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Cakir, M., Vitou, J., Haley, S., Peairs, F., Mornhinweg, D., Lage, J., Kuchel, H., Jacobs, B., Barclay, I., Tolmay, V., Malinga, J., Edwards, O., Christopher, M. and Castro, A.M. (2009) Development Of molecular markers and Pre-emptive breeding for resistance to Russian wheat aphid in wheat And barley: An international collaboration. In: XVII International Plant and Animal Genomes Conference, 10 - 14 January 2009, Town & Country Convention Center, San Diego, CA

Cakir, M., Vitou, J., Phan, H., Ilbi, H., Haley, S., Lawson, W., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Castro, A.M., Gelacha, S., Edwards, O., Christopher, M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2010) Pre-emptive breeding and molecular marker development for resistance to russian wheat aphid in wheat and barley. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Cakir, M., Wallwork, H., Gupta, S., Moody, D., Williams, K. and Li, C. (2004) Identification of a new adult plant resistance gene for scald (Rhynchosporium secalis) in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic

Carter, M., Drake-Brockman, F., Cakir, M., Jones, M. and Appels, R. (2003) Application of a novel approach for the conversion of RFLP markers into PCR based markers in wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Carter, M., Wilson, R.B., Barclay, I., Jones, M.G.K. and Paris, M. (2002) Application of high-throughput technologies for marker-assisted selection in wheat. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Cubizolles, N., Laugier, C., Mastrangelo, A.M., Faure, S., Choulet, F., Roger, D., Gauthier, V., Martinant, J-P, Sourdille, P., Balfourier, F., Le Paslier, M-C, Chauveau, A., Cakir, M., Gandon, B., Guerreiro, L., Gielen, J., Jaubertie, J.P., Jack, P., Robert, O., Korzun, V., Feuillet, C. and Paux, E. (2010) Insertion Site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. In: 3rd International Conference of Plant Molecular Breeding, 5 - 9 September 2010, Beijing, China

Dwyer, G., Loo, H., Khan, T., Siddique, K., Bellgard, M. and Jones, M. (2002) Molecular studies of ascochyta blight disease in chickpea. In: Crop Updates 2002: Pulse Research and Industry Development in Western Australia, 20 - 21 February 2002, Sheraton Hotel, Perth

Gupta, S., Li, C.D., Cakir, M. and Loughman, R. (2011) Mapping and allelic tests depicting recombinants on 6H locus conferring resistance to Pyrenophora teres f. teres isolates from Australia. In: 4th International Workshop on Barley Leaf Blights, 27 - 29 June, Dundee, Scotland

Gupta, S., Limadinata, V., Li, C., Lance, R., Loughman, R., Cakir, M. and Appels, R. (2005) Identification of novel resistances against spot-type net blotch (Pyrenophora teres f. maculata) in Canadian barleys. In: 12th Australian Barley Technical Symposium, 11 - 14 September 2005, Hobart, Tasmania

Gupta, S. and Loughman, R. (2007) Future issues with breeding for disease resistance in Australia – a vision. In: 13th Australian Barley Technical Symposium, 26 - 30 August, Perth, Western Australia

Gupta, S., Loughman, R., Cakir, M., Platz, G., Li, C., Lance, R., Jones, M. and Appels, R. (2002) Genetic and molecular studies of seedling and adult plant resistance in barley against Pyrenophora teres f. teres. In: 2nd International Barley Leaf Blight Workshop , 7 - 11 April, ICARDA, Aleppo, Syria

Gupta, S., Loughman, R., Lance, R. and Jones, M. (1999) Resistance to Pyrenophora teres in barley. In: 9th Australian Barley Technical Symposium, 12 - 16 September, Melbourne, Australia

Gupta, S., Loughman, R., Platz, G. and Lance, R. (2001) Journey of net blotch: from pathotype diversity to useful resistance in barley. In: 10th Australian Barley Technical Symposium, 16 - 20 September, Canberra, Australia

Gupta, S., Loughman, R., Platz, G., Lance, R. and Jones, M.G.K. (2000) Genetics of net-type net blotch (Pyrenophora teres f. sp. teres) resistance in barley against Australian pathotypes. In: Barley genetics VIII : proceedings of the 8th International Barley Genetics Symposium, 22 - 27 October, Adelaide, South Australia

Gupta, S., Wielinga, C., Li, C., Cakir, M., Platz, G., Loughman, R., Lance, R. and Appels, R. (2004) Gene distribution and SSR markers linked with net type net blotch resistance in barley. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 668-673.

Jones, M., Gupta, S., Platz, G., Ablett, G.R., Loughman, R.B., Poulsen, D.V., Li, C.E., Lance, R.G., Galway, N.C., Appels, R. and Cakir, M. (2002) Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Jones, M., Scobie, M., Brian, S., Cakir, M. and Nyarko, J.F. (2005) AFLP mapping of the lupen. In: 2nd Australian Model Legume Workshop, 5 - 8 April 2005, Rottnest Island, Western Australia

Jones, M.G.K., Wylie, S.J., Berryman, D., Selladurai, S., Brien, S.J., Li, D., Yang, R., Ryan, K., Li, H. and Li, L. (1999) Biotechnological tools in lupin breeding and disease diagnosis. In: 9th International Lupin Conference, 20 - 24 June 1999, Klink/Muritz, Germany

Jones, M.G.K., Zawko, G. and Selladurai, S. (2002) Rapid identification of wheat and barley varieities based on protein profiling by MALDI-TOF mass spectroscopy. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Li, C., Tarr, A., Lance, R., Harasymow, S., Cakir, M. and Appels, R. (2003) Toward isolating gene controlling seed dormancy and preharvest sprouting in barley. In: XIX International Congress of Genetics, 6 - 11 July, Melbourne, Australia

Li, C., Tarr, A., Lance, R., Harasymow, S., Paynter, B., Fox, G., Cakir, M., Broughton, S., Grime, C., Appels, R., Collins, H. and Read, B. (2003) Search for the major QTLs controlling barley grain physical quality. In: 11th Australian Barley Technical Symposium, 7 - 10 September 2003, Glenelg, South Australia

Li, D.A., Buirchell, B., Jones, R.A.C. and Jones, M.G.K. (2002) Towards the identification of molecular markers linked to and the isolation of a novel resistance gene to cucumber mosaic virus in Lupinus luteus. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Malinga, J., Pathak, R., Mulwa, R., Amulaka, F., Tabu, I., Masinde, E., Atsiambo, W., Munene, M. and Cakir, M. (2010) A search for Russian wheat aphid resistance in the facing stem rust threat under African tropical environments. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Murphy, N.E.A., Loughman, R., Lagudah, E.S., Appels, R. and Jones, M.G.K. (1999) Genetic variability in a collection of Stagonospora nodorum isolates from Western Australia. In: 5th International Septoria Workshop, 20 - 24 September 1999, CIMMYT, Mexico

Murphy, N.E.A., Loughman, R., Wilson, R., Lagudah, E.S., Appels, R. and Jones, M.G.K. (1999) Identification of a molecular marker linked to Septoria nodorum blotch resistance in Triticum tauschii using F2 bulked segregant. In: 5th International Workshop on Septoria and stagonospora diseases of cereals: A compilation of global research, 20 - 24 September 1999, Mexico

Nelson, M., Boersma, J., Chudy, M., Lesniewska, K., Ellwood, S., Phan, H., Moolhuijzen, P., Bellgard, M., Oliver, R., Swiecicki, W., Wolko, B. and Cowling, W. (2008) A dense reference map of the Lupinus Angustifolius L. Genome: A foundation for building lupin genome research. In: 12th International Lupin Conference, 14 - 18 September, Perth, Western Australia pp. 255-258.

Paris, M. and Jones, M.G.K. (2002) The development of 'perfect' molecular markers for plant breeding. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Paux, E., Gao, L., Faure, S., Choulet, F., Roger, D., Chevalier, K., Saintenac, C., Balrourier, F., Paux, K., Cakir, M., Brunel, D., Le-Paslier, M-C, Krugman, T., Gandon, B., Nevo, E., Bernard, M., Sourdille, P. and Feuillet, C. (2008) Insertion site-based polymorphism: A Swiss army knife for wheat genomics. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Paynter, B.H., Cakir, M., Eckermann, P.J. and Li, C. (2004) Improving the plumpness and yield of barley in Western Australia. In: 9th International Barley Genetics Symposium, 20 - 26 June, Brno, Czech Republic pp. 559-565.

Raman, H., Zhang, K., Setters, T., Moroni, L.K.S., Appels, R., Cakir, M., Raman, R., Delhaize, M., Ryan, P., Martin, P., Milgate, A., Mackay, M. and Matsumato, H. (2003) Molecular mapping and mechanism of aluminium tolerance in five DH populations of bread wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Scobie, M., Brien, S.R., Potter, R. and Jones, M.G.K. (2002) Molecular mapping and markers in sweet narrow-leafed lupins (L. angustifolius). In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Shankar, M., McLean, R., Cakir, M., Golzar, H., Bariana, H. and Loughman, R. (2008) Genetics of rust resistance in the Australian wheat germplasm. In: 11th International Wheat Genetics Symposium 2008, 24 - 29 August 2008, Brisbane, QLD

Vitou, J., Cakir, M. and Edwards, O. (2010) Pre-border research for Australia on Russian wheat aphid. In: International Russian Wheat Aphid Conference 2010, 26 - 28 April 2010, Singapore

Wang, Z., Hollams, A.G., Humphris, S.M. and Jones, M.G.K. (2002) Molecular studies on gene expression in host plants infected with the root-knot nematode Meloidoygne javanica. In: 12th Australasian Plant Breeding Conference: Plant breeding for the 11th millenium, 15 - 20 September 2002, Perth, W.A

Williams, K.J., Platz, G., Barr, A., Cheong, J., Willsmore, K., Cakir, M. and Wallwork, H. (2003) Mapping genes for resistance to the spot form of net blotch. In: 11th Australian Barley Technical Symposium, 7 - 10 September 2003, Glenelg, South Australia

Wylie, S., Li, H., Hoffmann, K., Ryan, K., Yang, R., Li, D., Liu, L., Buirchell, B., Jones, R.A.C. and Jones, M. (1998) Genetically engineered virus disease resistance in lupins. In: Crop Updates 1998: Lupins, 18 - 20 February 1998, Rendezvous Observation City Hotel, Scarborough, Perth

Conference Item

Cakir, M. (2012) Genetic mapping of Russian wheat aphid genes in barley. In: 11th International Barley Genetics Symposium (IBGS), 15 - 20 April 2012, Hangzhou, China.

Cakir, M., Drake-Brockman, F., Shankar, M., Golzar, H., Kollehn, D., McLean, R., Bariana, H., Wilson, R., Barclay, I., Moore, C., Kuchel, H., Jones, M. and Loughman, R. (2009) Molecular mapping of rust resistance genes and marker-assisted breeding in wheat. In: BGRI 2009 Technical Workshop, 17 - 20 March 2009, Obregon, Sonora, Mexico.

Cakir, M., Li, C., Lance, R., Barclay, I., McLean, R., Wilson, R. and Appels, R. (2004) DNA-based technologies in wheat and barley breeding. In: Plant & Animal Genomes XII Conference, 10 - 14 January 2004, San Diego, CA.

Cakir, M., Phan, H., Edwards, O. and Lovett, J. (2010) Overview of an international Russian wheat aphid workshop towards safeguarding Australia's wheat and barley crops. In: The Australian Entomological Society's 41st AGM & Scientific Conference, 26 - 30 September 2010, Perth, Western Australia.

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Vicky, T., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Kuchel, H., Jacobs, B., Ogbonnaya, F., Barclay, I. and Sheppard, J. (2011) Gene discovery and molecular Pre-breeding for insect resistance in wheat and barley. In: XIX International Plant & Animal Genome Conference, 15 - 19 January 2011, Town & Country Convention Center, San Diego, CA.

Cakir, M., Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Vicky, T., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Ogbonnaya, F. and Sheppard, J. (2011) Gene discovery and molecular Pre-breeding for insect resistance in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Cakir, M., Rebetzke, G., Conocono, E., Drake-Brockman, F., Waters, I., Stefanova, K., Wilson, R., Barclay, I., McLean, R. and Setter, T. (2011) Physiologic and genetic analysis Of terminal drought tolerance in wheat. In: XIX International Plant & Animal Genome Conference, 15 - 19 January 2011, Town & Country Convention Center, San Diego, CA.

Cakir, M., Vitou, J., Haley, S., Phan, H., Edwards, O., Peairs, F., Turanli, F., Ilker, E., Ilbi, H., Malinga, J., Maria, A., Tolmay, V. and Bausshini, M. (2013) Gene discovery and pre-emptive breeding of Australian wheat (Triticum Aestivum L.) for broad resistance against insects. In: Wheat Breeding Assembly 2013, 17 - 19 July, Brisbane, Australia.

Cakir, M., Vitou, J., Kollehn, D., Lawson, W., Ilbi, H., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, I. and Sheppard, J. (2009) A global effort in breeding for resistance to Russian wheat aphid in wheat and barley. In: 19th International Triticeae Mapping Initiative - 3rd COST Tritigen, 31 August - 4 September 2009, Clermont-Ferrand, France.

Cakir, M., Vitou, J., Lawson, W., Haley, S., Peairs, F., Mornhinweg, D., Bohssini, M., Ogbonnaya, F., Lage, J., Tolmay, V., Malinga, J., Edwards, O., Christopher, M., Castro, A.M., Franckowiak, J., Kuchel, H., Jacobs, B., Barclay, L., Gelalcha, S. and Sheppard, J. (2010) Safeguarding world wheat and barley production against Russian wheat aphid: An international pre-breeding initiative. In: XVIII Annual International Plant & Animal Genome Conference, 26 - 29 September 2010, Perth, Western Australia.

Cakir, M., Waters, I., McDonald, G., Drake-Brockman, F., Stefenova, K., Verbyla, A. and Setter, T. (2011) Mapping QTLs for waterlogging tolerance in wheat(Triticum aestivum L.). In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Cakir, M., Waters, I., Rebetzke, G., Conocono, E., Drake-Brockman, F., Stefanova, K., Wilson, R., Barclay, I., McLean, R. and Setter, T. (2011) Genetic mapping and QTL analysis for terminal drought tolerance in Wheat(Triticum aestivum L.). In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Carter, M., Li, D., Cakir, M., McLean, R., Wilson, R., Barclay, I., Loughman, R. and Appels, R. (2004) High-throughput technologies for marker-assisted selection in wheat. In: Plant & Animal Genomes XII Conference, 10 - 14 January 2004, San Diego, CA.

Florides, C., Berryman, D. and Jones, M. (2011) Proteome analysis and MALDI-TOF MS, a most efficient tool in Agricultural Diagnostics. In: 3rd International Symposium on Frontiers in Agriculture Proteome Research, 8 - 10 November 2011, Tsukuba International Congress Center, Japan.

Fosu-Nyarko, J., Jones, R.G., Smith, L.S., Jones, M.G.K. and Dwyer, G. (2002) Testing for disease vulnerability in alternative pasture and forage legumes being assessed in plant improvement programmes. In: Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference, 15 - 20 September, Perth, Western Australia.

Gupta, S., Li, C., Cakir, M., Loughman, R., Lance, R., Appels, R. and Jones, M.G.K. (2006) Resistances for leaf blight diseases in barley populations. In: 3rd International Workshop on Barley Leaf Blights, 23 - 27 July, Edmonton, AB, Canada.

Hailstones, D.L., Lock, J.E., Berryman, D., Rochfort, S.J., Flack, M.L., Englezou, A., Jones, M., Cakir, M., Smuts, C. and Chapman, T.A. (2011) Evaluation of novel platforms to differentiate pathovars of plant pathogenic bacteria. In: Inaugural joint 4th Asian Conference on Plant Pathology and the 18th Biennial Australasian Plant Pathology Society Conference (2011), 26 - 29 April 2011, Darwin Convention Centre, Darwin, NT.

Hollams, A.G., Wang, Z. and Jones, M.G.K. (2004) In situ analysis of gene expression in Meloidogyne javanica feeding cells. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Jones, M. (2011) Application of gene silencing for control of plant parasitic nematodes. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Jones, M.G.K. (2011) Application of gene silencing to control of plant parasitic nematodes. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Jones, M.G.K. (2005) Biosecurity and Biosafety: Challenges for the region. In: Sarawak Bio Symposium, 8 - 9 March 2005, Sarawak, Borneo.

Jones, M.G.K. (1999) CMV resistance in transgenic narrow-leafed lupin with the CMV replicase gene. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Characterisation of genes differentially expressed in nematode feeding cells. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Cloning and expression of the NIA protease from BYMV. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Development and implementation of PCR-based markers in Western Australia's barley breeding program. In: 9th Australian Barley Technical Symposium, 12 - 16 September 1999, Melbourne, Australia.

Jones, M.G.K. (1999) Engineering cucumber mosaic virus resistance in narrow-leafed lupins (Lupinus angustifolius) based on a defective replicase gene. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1998) Gene expression in root-knot nematode infected plant roots. In: ComBio 1998, 21 August 1998, Scarborough, Western Australia.

Jones, M.G.K. (1999) Gene mapping and marker-assisted breeding of Lupinus angustifolius. In: 9th International Lupin Conference, 20 - 24 June 1999, Klink/Muritz, Germany.

Jones, M.G.K. (1998) Gene mapping and marker-assisted breeding of lupinus angustifolius. In: ComBio 1998, 21 August 1998, Scarborough, Western Australia.

Jones, M.G.K. (1999) Genomic characterisation of subterranean clover mottle virus. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1999) Investigating the granule-bound starch sythase genes of wheat. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Molecular analysis of the coat proteins of necrotic and non-nectrotic strains of bean yellow mosaic potyvirus in narrow-leafed lupin (Lupinus angustifolius). In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1999) Molecular marker for resistance to Stagonospora nodorum in Triticum Tauschii. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Preliminary assessments for resistance to bean yellow mosaic virus replicase gene in transgenic lupins. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1999) Protection conferred by the cucumber mosaic virus replicase gene in transgenic narrow-leafed lupin. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1999) Quantative reverse transcription - PCR assay of the RNA component of cucumber mosaic virus using the Taqman fluorogenic detection system. In: 15th Meeting of the International Working Group on Legume Viruses, 15 - 17 August 1999, Fremantle, Western Australia.

Jones, M.G.K. (1999) Rabbit population control using a plant vaccine. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Single giant cell RT-PCR and differential display RT-PCR. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Towards identification and isolation of an endogenous resistance gene to cucumber mosaic virus in lupinus luteus. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) Use of differential display to identify changes in gene expression during root-knot nematode infection. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) The coat protein of lupin necrotic and non-nectrotic strains of bean yellow mosaic virus. In: 11th International Congress of Virology, 9 - 13 August 1999, Sydney, Australia.

Jones, M.G.K. (1999) The complete nucleotide sequences of cucumber mosaic virus LY isolate. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) A molecular construct to study the expression pattern of a wound-inducible promoter during insect attack. In: ComBio 1999, August 1999, Perth, Western Australia.

Jones, M.G.K. (1999) A protease gene of bean yellow mosaic virus confers virus resistance in lupin. In: XIth International Congress of Virology, 9 - 13 August 1999, Sydney, Australia.

Jones, M.G.K., Berryman, D., Scobie, M., Webster, C.G., Wylie, S. and Gregg, K. (2005) Detection of mutations and their application in plant breeding. In: Mutation Detection 2005: HUGO VIII International Symposium on Mutations in the Genome, 31 May - 4 June 2005, Santorini, Greece.

Jones, M.G.K., Fosu-Nyarko, J., Agrez, V., Hird, S., Gill, R., Saqib, M. and Wylie, S.J. (2011) Synthetic host resistance to plant parasitic nematodes, and new plant virus encounters between endemic and crop plants. In: Japan-Australia Symposium on Plant Sciences for Agriculture IV, 11 - 12 December, Perth, Western Australia.

Jones, M.G.K., Gill, R., Nicol, P. and Fosu-Nyarko, J. (2011) De novo analysis of 454 GSFlx transcriptome of Pratylenchus thornei. In: Proceedings of the 63rd International Symposium on Crop Protection, 24 May, Ghent, Belgium.

Jones, M.G.K., Wylie, S.J., Saqib, M., Gill, R., Cakir, M., Luo, H., Zhang, J., Nicol, J., Iqbal, S., Tan, J., Tan, Matthew, Herath, M., Chamberlain, D., Quader, M., Francisco, P., Ong, J., Agrez, V. and Fosu-Nyarko, J. (2011) Applications of 'Next Generation' sequencing in plant pathology. In: 21st Annual Combined Biological Sciences Meeting, 26 August, Perth, Western Australia.

Li, C., Lance, R., Tarr, A., Harasymow, S., Gupta, S., Cakir, M., Jones, M.G.K. and Appels, R. (2006) Marker assisted breeding in barley: the winners and the losers. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand .

Limadinata, V., Liu, F., Gupta, S., Park, R., Platz, G., Zhang, X-Q, Westcott, S., Loughman, R., Lance, R. and Li, C. (2011) A gene or gene cluster controlling adult plant resistance to leaf rust on chromosome 5HS. In: 15th Australian Barley Technical Symposium, 18 - 21 September, Adelaide, Australia.

Loo, H.P., Jones, M.G.K., Siddique, K., Whitney, D., Tanveer, K. and Dwyer, G.I. (2004) Application to Medicago truncatula genome data for chickpea improvement. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Murphy, N., Loughman, R., Wilson, R., Lagudah, E., Appels, R. and Jones, M. (1999) Inheritance of Septoria nodorum blotch resistance in a Triticum tauschii accession controlled by a single gene. In: 5th International Workshop on Septoria and stagonospora diseases of cereals: A compilation of global research, 20 - 24 September 1999, Mexico.

Nicol, P., Jones, M.G.K., Gill, R. and Fosu-Nyarko, J. (2011) Analysis of transcriptome data from plant parasitic nematodes. In: 21st Annual Combined Biological Sciences Meeting, 26 August, Perth, Western Australia.

Paux, E., Gao, L-F, Faure, S., Choulet, F., Saintenac, C., McNeil, M., Balfourier, F., Roger, D., Sourdille, P., Gautier, V., Martinant, J-P, Cakir, M., Gandon, B., Krugman, T., Appels, R., Nevo, E., Jia, J. and Feuillet, C. (2009) Insertion Site-Based Polymorphism: A Swiss army knife for wheat genomics. In: 19th International Triticeae Mapping Initiative - 3rd COST Tritigen, 31 August - 4 September 2009, Clermont-Ferrand, France.

Pearce, R., Gupta, S., Bradley, R. and Loughman, R. (2006) Pathogen Virulence for Spot-type Net Blotch (Pyrenophora teres) on barley in Western Australia. In: 3rd International Workshop on Barley Leaf Blights, 23 - 27 July, Edmonton, AB, Canada.

Perera, M.R., Bayliss, K.L. and Jones, M.G.K. New Australian record for infection of trees in Paulownia plantations by root-knot nematodes. In: 15th Australasian Plant Pathology Society Conference, 26-29 September 2005 , Geelong, Vic..

Perera, M.R. and Jones, M.G.K. (2004) A wound-inducible promoter that drives gene expression in plants after insect attack. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Perera, M.R., Jones, M.G.K. and Vanstone, V. (2005) Hidden enemies of crop plants: Developing novel methods to identify plant parasitic nematodes. In: 15th Biennial Conference. Australasian Plant Pathology Society (APPS), 26 - 30 September 2005, Geelong, VIC.

Perera, M.R., Vanstone, V. and Jones, M.G.K. (2004) A novel approach to identify plant parasitic nematodes using Maldi-Tof mass spectrometry. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Perera, M.R., Vanstone, V.A. and Jones, M.G.K. (2005) A novel approach to identify plant-parasitic nematodes using maldi-tof mass spectrometry. In: 44th Annual Meeting of the Society of Nematologists, 9 - 13 July 2005, Fort Lauderdale, Florida.

Phan, H., Vitou, J., Haley, S., Peairs, F., Ilbi, H., Mornhinweg, D., Simkova, H., Bohssini, M., Tolmay, V., Malinga, J., Edwards, O., Lawson, W., Castro, A.M., Ogbonnaya, F., Christopher, M., Sheppard, J. and Cakir, M. (2011) Gene discovery and pre-breeding for Russian wheat aphid resistance in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Ramsay, K., Wang, Z. and Jones, M.G.K. (2005) Gene expression in early stages of giant cells induced by meloidogyne javanica using Laser Capture Microdissection. In: 44th Annual Meeting of the Society of Nematologists, 9 - 13 July 2005, Fort Lauderdale, Florida.

Ratanasanobon, K.N., Wylie, S. and Jones, M.G.K. (2004) In planta transformation of narrow-leafed lupin (Lupinus angustifolius) seedlings. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Saqib, M., Wylie, S., Fosu-Nyarko, J., Smith, T. and Jones, R.G. (2004) Molecular dissection of virus resistance using Medicago truncatula. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Saqib, M., Wylie, S.J. and Jones, M.G.K. (2014) Serendipitous identification of a new Iflavirus-like virus infecting tomato, and its subsequent characterization. In: 55th Annual Meeting of the Japanese Society of Plant Physiologists (JSPP), 18 - 20 March, Toyama City, Japan.

Setter, T.L., Singh, K.N., Kulshreshtha, N., Sharma, S.K., Yaduvanshi, N.P.S., Ram, P.C., Singh, B.N., Rane, J., McDonald, G., Khabaz-Saberi, H., Biddulph, B., Wilson, R., Barclay, I., McLean, R., Cakir, M., Drake-Brockman, F. and Waters, I. (2007) Review of wheat improvement for waterlogging tolerance in Australia and India: The importance of anaerobiosis and element/microelement toxicities associated with different soils. In: 9th Meeting of the International Society of Plant Anaerobiosis (ISPA) Conference, 17 - 23 Nov 2007, Matsushima, Japan.

Tan, J.C.H., Fosu-Nyarko, J. and Jones, M.G.K. (2010) Application of gene silencing for nematode control. In: Plant Health & Protection Research Symposium, 29 October, Perth, Western Australia.

Tan, M.N.H., Vanstone, V.A. and Jones, M.G.K. (2010) Novel molecular diagnostic frame work for plant parasitic nematode pest of plant biosecurity concern-better and faster than classical taxonomy? In: Plant Health & Protection Research Symposium, 29 October, Perth, Western Australia.

Wang, Z. and Jones, M.G.K. (2004) Gene expression in giant cells induced in host plant roots by meloidognyne javanica. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Wang, Z., Jones, M.G.K. and Ramsay, K. (2004) Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Wang, Z., Ramsay, K. and Jones, M.G.K. (2005) Construction of a giant cell specific cDNA library using laser capture microdissection. In: 15th Biennial Conference. Australasian Plant Pathology Society (APPS), 26 - 30 September 2005, Geelong, VIC.

Webster, C.A., Wylie, S., Chen, J-Y, Kenworthy, W.D. and Jones, M.G.K. (2004) Towards highly parallel tests for plant virus diagnosis. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Wylie, S., Coutts, B., Jones, M.G.K. and Jones, R.A.C. (2008) Bean Yellow Mosaic Virus: Its phylogeny, biological properties and evolution in response to plant domestication. In: 9th International Congress of Plant Pathology ICPP 2008, 24 - 29 August 2008, Torino, Italy.

Wylie, S. and Jones, M. (2008) Bean Yellow Mosaic Virus in Lupins: Strains, losses, epidemiology and control. In: 12th International Lupin Conference, 14 - 18 September 2008, Fremantle, Western Australia.

Wylie, S., Welsh, B., Hodgson, L., Chapple, S., Fletcher, N., Barker, S., Smith, P. and Jones, M.G.K. (2004) Transgenic lupin cultivar immune to bean yellow mosaic virus. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth.

Zhang, X-Q (2007) Dissecting a region of barley chromosome 5HL using synteny with rice genomic sequences. In: 13th Australian Barley Technical Symposium, 26 - 30 August, Perth, Western Australia.

Book Chapter

Appels, R., Ma, W., Verbyla, A., Cakir, M., Francki, M., Carter, M., Li, C., Lance, R., Wilson, R., McLean, R., Barclay, I. and Ryan, K. (2005) Molecular markers, wheat quality and accelerated breeding technologies. In: Chung, O.K. and Lookhart, G.L., (eds.) International Wheat Quality Conference Proceedings. Grain Industry Alliance, University of Wisconsin, Madison, pp. 59-64.

Francki, M. and Appels, R. (2007) Comparative genomics and crop improvement. In: Brown, J.R., (ed.) Comparative Genomics: Basic and applied research. CRC Press, Boca Raton, FL, pp. 321-340.

Francki, M.G. (2009) Genomics for wheat improvement. In: Molecular Techniques in Crop Improvement. Springer Netherlands, pp. 281-305.

Francki, M.G., Crawford, A.C. and Oldach, K. (2011) Transriptomics, metabolomics and proteomics: Integration of latest technologies for improving future wheat productivity. In: Benkeblia, N., (ed.) Sustainable Agriculture and New Biotechnologies. CRC Press, Boca Raton, FL, pp. 425-452.

Jones, M.G.K. (2009) Plant biotechnology. In: Walker, J.M. and Rapley, R., (eds.) Molecular Biology and Biotechnology. The Royal Society of Chemistry, Cambridge, UK, pp. 272-306.

Jones, M.G.K. and Goto, D.B. (2011) Root-knot Nematodes and giant cells. In: Jones, J., Gheysen, G. and Fenoll, C., (eds.) Genomics and Molecular Genetics of Plant-Nematode Interactions. Springer Netherlands, pp. 83-100.

Jones, M.G.K., Rana, J., Fosu-Nyarko, J., Zhang, J., Perera, M.R. and Chamberlain, D. (2009) Towards developing transgenic resistance to nematodes in wheat. In: Riley, I.T., Nicol, J.M. and Dababat, A.A., (eds.) Cereal cyst nematodes: Status, research and outlook. Proceedings of the first Workshop of the International Cereal Cyst Nematode Initiative, 21-23 October 2009, Antalya, Turkey. CIMMYT, Ankara, Turkey, pp. 191-194.

Jones, R.A.C., Fosu-Nyarko, J., Jones, M.G.K. and Dwyer, G.I. (2001) Subterranean clover mottle virus. In: Jones, A.T. and Robinson, D.J., (eds.) Descriptions of Plant Viruses No. 387. Scottish Crop Research Institute.

Li, C., Gupta, S., Zhang, X-Q, Westcott, S., Yang, J., Park, R., Platz, G., Loughman, R. and Lance, R. (2012) A major QTL controlling adult plant resistance for barley leaf rust. In: Zhang, G., Li, C. and Liu, X., (eds.) Advance in Barley Sciences. Proceedings of 11th International Barley Genetics Symposium. Springer, pp. 285-300.

McLean, R., Barclay, I., Wilson, R., Appels, R., Cakir, M., Devlin, G. and Li, D. (2007) Marker implementation in the Department of Agriculture, Western Australia wheat breeding program. In: Buck, H.T., Nisi, J.E. and Salomón, N., (eds.) Wheat Production in Stressed Environments. Springer Netherlands, pp. 737-746.

Schibeci, D., Potter, R., Wathen-Dunn, K., Jones, M. and Bellgard, M. (2001) Applying artificial neural networks to the classification of wheat varieties processed via MALDI-TOF mass spectrometry. In: Mastorakis, N.E., (ed.) Advances in Neural Networks and Applications. World Scientific and Engineering Society Press, pp. 262-267.

Scobie, M.N. and Jones, M.G.K. (2010) Identification of barley varieties by protein profiling. In: Zhang, G. and Li, C., (eds.) Genetics and Improvement of Barley Malt Quality. Springer Berlin Heidelberg, China, pp. 99-112.

Wylie, S.J. and Jones, M.G.K. (2012) Are viruses always villains? The roles plant viruses may play in improving plant responses to stress. In: Tuteja, N., Gill, S.S. and Tuteja, R., (eds.) Improving Crop Productivity in Sustainable Agriculture. Wiley-VCH, pp. 155-162.

Yang, J., Li, C., Gong, X., Gupta, S., Lance, R., Zhang, G., Loughman, R. and Zhu, J. (2012) Large population with low marker density verse small population with high marker density for QTL mapping: A case study for mapping QTL controlling barley net blotch resistance. In: Zhang, G., Li, C. and Xu, L., (eds.) Advance in Barley Sciences. Proceedings of 11th International Barley Genetics Symposium. Springer, pp. 301-315.

Thesis

Tan, Matthew (2012) Molecular approaches to diagnostics for plant parasitic nematodes of biosecurity concern. PhD thesis, Murdoch University.

Report

Cakir, M. (2007) AWCMMP component : Implementation/​validation of molecular markers in DAFWA (VI 12) : A final report prepared for the Grains Research and Development Corporation. WA: Dept. of Agriculture and Food, Perth, Western Australia.

Others

Fosu-Nyarko, J., Jones, R.A.C., Smith, L., Jones, M. and Dwyer, G. (2002) Responses of alternative annual pasture and forage legumes to challenge with infectious subterranean clover mottle virus. Crop updates 2002 – farming systems .

This list was generated on Thu Aug 21 03:24:33 2014 IST.