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Number of items at this level: 299.

2014

Appels, R., Nyström-Persson, J. and Keeble-Gagnère, G. (2014) Advances in genome studies in plants and animals. Functional & Integrative Genomics . In Press.

Bellgard, M., Beroud, C., Parkinson, K., Harris, T., Ayme, S., Baynam, G., Weeramanthri, T., Dawkins, H. and Hunter, A. (2014) Correction: Dispelling myths about rare disease registry system development. Source Code for Biology and Medicine, 9 (1).

Deng, P., Nie, X., Wang, L., Cui, L., Liu, P., Tong, W., Biradar, S.S., Edwards, D., Berkman, P., Šimková, H., Doležel, J., Luo, M., You, F., Batley, J., Fleury, D., Appels, R. and Weining, S. (2014) Computational Identification and comparative analysis of miRNAs in Wheat Group 7 chromosomes. Plant Molecular Biology Reporter, 32 (2). pp. 487-500.

Glasson, E.J., Dye, D.E. and Bittles, A.H. (2014) The triple challenges associated with age-related comorbidities in Down syndrome. Journal of Intellectual Disability Research, 58 (4). pp. 393-398.

Greer, K.L., Lochmüller, H., Flanigan, K., Fletcher, S. and Wilton, S.D. (2014) Targeted exon skipping to correct exon duplications in the dystrophin gene. Molecular Therapy — Nucleic Acids, 3 (3). e155.

Jiang, J., Miyata, M., Chan, C., Ngoh, S.Y., Liew, W.C., Saju, J.M., Ng, K.S., Wong, F.S., Lee, Y.S., Chang, S.F. and Orbán, L. (2014) Differential transcriptomic response in the spleen and head kidney following vaccination and infection of Asian seabass with Streptococcus iniae. PLoS ONE, 9 (7).

Lew-Tabor, A.E., Bruyeres, A.G., Zhang, B. and Rodriguez Valle, M. (2014) Rhipicephalus (Boophilus) microplus tick in vitro feeding methods for functional (dsRNA) and vaccine candidate (antibody) screening. Ticks and Tick-borne Diseases, In Press .

Luo, Y-B, Mastaglia, F.L. and Wilton, S.D. (2014) Normal and aberrant splicing of LMNA. Journal of Medical Genetics, 51 (4). pp. 215-223.

Luo, Y-B, Mitrpant, C., Adams, A.M., Johnsen, R.D., Fletcher, S., Mastaglia, F.L. and Wilton, S.D. (2014) Antisense oligonucleotide induction of progerin in human myogenic cells. PLoS ONE, 9 (6).

Rasheed, A., Xia, X., Yan, Y., Appels, R., Mahmood, T. and He, Z. (2014) Wheat seed storage proteins: Advances in molecular genetics, diversity and breeding applications. Journal of Cereal Science, 60 (1). pp. 11-24.

Wang, S., Wong, D., Forrest, K., Allen, A., Chao, S., Huang, B.E., Maccaferri, M., Salvi, S., Milner, S.G., Cattivelli, L., Mastrangelo, A.M., Whan, A., Stephen, S., Barker, G., Wieseke, R., Plieske, J., Lillemo, M., Mather, D., Appels, R., Dolferus, R., Brown-Guedira, G., Korol, A., Akhunova, A.R., Feuillet, C., Salse, J., Morgante, M., Pozniak, C., Luo, M-C, Dvorak, J., Morell, M., Dubcovsky, J., Ganal, M., Tuberosa, R., Lawley, C., Mikoulitch, I., Cavanagh, C., Edwards, K.J., Hayden, M. and Akhunov, E. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90000 single nucleotide polymorphism array. Plant Biotechnology Journal . In Press.

Wein, N., Vulin, A., Falzanaro, M.S., Szigyarto, C.A.K., Maiti, B., Findlay, A., Heller, K.N., Uhlen, M., Bakthavachalu, B., Messina, S., Vita, G.L., Gualandi, F., Wilton, S.D., Yang, L., Dunn, D.M., Schoenberg, D., Weiss, R.B., Howard, M.T., Ferlini, A. and Flanigan, K.M. (2014) Successful use of Out-of-Frame Exon 2 Skipping induces IRES-Driven expression of the N-Truncated dystrophin isoform: promising approach for treating other 5 ' Dystrophin Mutations. Molecular Therapy, 22 (Supp. 1). S294-S295.

Wilton, S.D., Fletcher, S. and Flanigan, K.M. (2014) Dystrophin as a therapeutic biomarker: Are we ignoring data from the past? Neuromuscular Disorders, 24 (6). pp. 463-466.

Yang, Y., Zhao, H., Barrero, R.A., Zhang, B., Sun, G., Wilson, I.W., Xie, F., Walker, K.D., Parks, J.W., Bruce, R., Guo, G., Chen, L., Zhang, Y., Huang, X., Tang, Qi, Liu, H., Bellgard, M.I., Qiu, D., Lai, J. and Hoffman, A. (2014) Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431. BMC Genomics, 15 (1).

Zhang, J., Dell, B., Biddulph, B., Khan, N., Xu, Y., Luo, H. and Appels, R. (2014) Vernalization gene combination to maximize grain yield in bread wheat (Triticum aestivum L.) in diverse environments. Euphytica, In press .

2013

Appels, R., Barrero, R. and Bellgard, M. (2013) Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals. Functional & Integrative Genomics, 13 (1). pp. 1-9.

Appels, R., Keeble-Gagnère, G., Chapman, B., Fleury, D., Bellgard, M., Diepeveen, D., Zhang, J., Webster, H., Islam, S. and Ma, W. (2013) Sequencing chromosome 7A and the Australia-China centre for wheat improvement. In: Wheat Breeding Assembly 2013, 17 - 19 July, Brisbane, Australia.

Baynam, G.S., Walters, M., Dawkins, H., Bellgard, M., Halbert, A.R. and Claes, P. (2013) Objective monitoring of mTOR inhibitor therapy by Three-Dimensional facial analysis. Twin Research and Human Genetics, 16 (4). pp. 840-844.

Bellgard, M., Beroud, C., Parkinson, K., Harris, T., Ayme, S., Baynam, G., Weeramanthri, T., Dawkins, H. and Hunter, A. (2013) Dispelling myths about rare disease registry system development. Source Code for Biology and Medicine, 8 (1). p. 21.

Bittles, A.H. (2013) Consanguineous marriages and congenital anomalies. The Lancet, 382 (9901). pp. 1316-1317.

Bittles, A.H. (2013) Genetics and global healthcare. The Journal of the Royal College of Physicians of Edinburgh, 43 (1). pp. 7-10.

Chapman, B., Castellana, N., Apffel, A., Ghan, R., Cramer, G.R., Bellgard, M., Haynes, P.A. and Sluyter, S.C. (2013) Plant proteogenomics: From protein extraction to improved gene predictions. Methods in Molecular Biology, 1002 . pp. 267-294.

Coghlan, M.L., White, N.E., Murray, D.C., Houston, J., Rutherford, W., Bellgard, M.I., Haile, J. and Bunce, M. (2013) Metabarcoding avian diets at airports: implications for birdstrike hazard management planning. Investigative Genetics, 4 (1).

Constantinoiu, C.C., Jonsson, N.N., Jorgensen, W.K., Jackson, L.A., Piper, E.K. and Lew-Tabor, A.E. (2013) Immuno-fluorescence staining patterns of leukocyte subsets in the skin of taurine and indicine cattle. Research in Veterinary Science, 95 (3). pp. 854-860.

Elfatih, S-E, Peng, Y., Ma, J., Peng, J., Sun, D. and Ma, W. (2013) High frequency of unusual high molecular weight glutenin alleles in 232 tetraploid durum wheat accessions (Triticum turgidum L. ssp. durum Desf). Cereal Research Communications, 41 (4). pp. 583-592.

Fletcher, S., Viola, H.M., Adams, A.M., Wilton, S.D. and Hool, L.C. (2013) P.11.5 PMO-mediated dystrophin exon 23 skipping restores mitochondrial function in the mdx mouse heart. Neuromuscular Disorders, 23 (9-10). p. 800.

Fletcher, S. and Wilton, S.D. (2013) Exon skipping and Duchenne muscular dystrophy: A clinical trial update. The Journal of Gene Medicine, 15 (8-9). p. 330.

Hammond, E., Watts, G.F., Rubinstein, Y., Farid, W., Livingston, M., Knowles, J.W., Lochmüller, H., Bellgard, M. and Dawkins, H.J.S. (2013) Role of international registries in enhancing the care of familial hypercholesterolaemia. International Journal of Evidence-Based Healthcare, 11 (2). pp. 134-139.

Islam, S., Ma, W., Appels, R. and Yan, G. (2013) Mass spectrometric fingerprints of seed protein for defining Lupinus spp. relationships. Genetic Resources and Crop Evolution, 60 (3). pp. 939-952.

Jia, J., Zhao, S., Kong, X., Liu, Y., Zhao, G., He, W., Appels, R., Pfeifer, M., Tao, Y., Zhang, X., Jing, R., Zhang, C., Ma, Y., Gao, L., Gao, C., Spannagl, M., Mayer, K.F.X., Li, D., Pan, S., Zheng, F., Hu, Q., Xia, X., Li, J., Liang, Q., Chen, J., Wicker, T., Gou, C., Kuang, H., He, G., Luo, Y., Keller, B., Xia, Q., Lu, P., Wang, J., Zou, H., Zhang, R., Xu, J., Gao, J., Middleton, C., Quan, Z., Liu, G., Wang, J., Yang, H., Liu, X., He, Z., Mao, L. and Wang, J. (2013) Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 496 (7443). pp. 91-95.

Krishnaswamy, S., Fletcher, S., Wong, B.L. and Wilton, S.D. (2013) Exceptions to exceptions in the Duchenne: Becker dystrophin reading frame. The Journal of Gene Medicine, 15 (8-9). p. 336.

Luo, Y-B, Mitrpant, C., Johnsen, R., Fabian, V., Needham, M., Fletcher, S., Wilton, S.D. and Mastaglia, F.L. (2013) Investigation of splicing changes and post-translational processing of LMNA in sporadic inclusion body myositis. International Journal of Clinical and Experimental Pathology, 6 (9). pp. 1723-1733.

Luo, Y-B, Mitrpant, C., Johnsen, R.D., Fabian, V.A., Fletcher, S., Mastaglia, F.L. and Wilton, S.D. (2013) Investigation of age-related changes in LMNA splicing and expression of progerin in human skeletal muscles. International Journal of Clinical and Experimental Pathology, 6 (12). pp. 2778-2786.

Manzoli, G.N., Abé-Sandes, K., Bittles, A.H., da Silva, D.S.D., Fernandes, L. da C., Paulon, R.M.C., de Castro, I.C.S., Padovani, C.M.C.A. and Acosta, A.X. (2013) Non-syndromic hearing impairment in a multi-ethnic population of Northeastern Brazil. International Journal of Pediatric Otorhinolaryngology, 77 (7). pp. 1077-1082.

Moolhuijzen, P.M., Manners, J.M., Wilcox, S.A., Bellgard, M.I. and Gardiner, D.M. (2013) Genome sequences of six Wheat-infecting fusarium species isolates. Genome Announcements, 1 (5). e00670-13.

Murray, D.C., Haile, J., Dortch, J., White, N.E., Haouchar, D., Bellgard, M.I., Allcock, R.J., Prideaux, G.J. and Bunce, M. (2013) Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages. Scientific Reports, 3 .

Oszvald, M., Balázs, G., Pólya, S., Tömösközi, S., Appels, R., Békés, F. and Tamás, L. (2013) Wheat storage proteins in transgenic rice endosperm. Journal of Agricultural and Food Chemistry, 61 (31). pp. 7606-7614.

Rodriguez-Valle, M., Moolhuijzen, P., Piper, E.K., Weiss, O., Vance, M., Bellgard, M. and Lew-Tabor, A. (2013) Rhipicephalus microplus lipocalins (LRMs): Genomic identification and analysis of the bovine immune response using in silico predicted B and T cell epitopes. International Journal for Parasitology, 43 (9). pp. 739-752.

She, M., Yin, G., Li, J., Li, X., Du, L., Ma, W. and Ye, X. (2013) Efficient regeneration potential is closely related to auxin exposure time and catalase metabolism during the somatic embryogenesis of immature embryos in triticum aestivum L. Molecular Biotechnology, 54 (2). pp. 451-460.

Wilton, S. (2013) An update on DMD exon skipping trials: Making more sense with splice switching antisense oligonucleotides. Clinical and Experimental Pharmacology and Physiology, 40 (Supp. 1). p. 38.

Zhang, J., Dell, B., Biddulph, B., Drake-Brockman, F., Walker, E., Khan, N., Wong, D., Hayden, M. and Appels, R. (2013) Wild-type alleles of Rht-B1 and Rht-D1 as independent determinants of thousand-grain weight and kernel number per spike in wheat. Molecular Breeding, 32 (4). pp. 771-783.

Zhang, J., Dell, B., Biddulph, B., Khan, N., Luo, H., Xu, Y., Vergauwen, R., DeSadeleer, E., Appels, R. and van den Enden, R. (2013) Stem water soluble carbohydrate remobilization in wheat under water limited conditions. In: Wheat Breeding Assembly 2013, 17 - 19 July, Brisbane, Australia.

Zhou, J., Han, C., Cao, H., Zhen, S., Yu, Z., Li, X., Ma, W. and Yan, Y. (2013) Fast identification of wheat 1BL.1RS translocation by reversed-phase ultra-performance liquid chromatography (RP-UPLC). Crop and Pasture Science, 64 (9). pp. 865-873.

2012

Appels, R. (2012) Plant phenome to genome: a mini-review. Functional Plant Biology, 39 (7). iii-viii.

Appels, R., Barrero, R. and Bellgard, M. (2012) Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012. Functional & Integrative Genomics, 12 (1). pp. 1-9.

Bellgard, M.I. and Bellgard, S.E. (2012) A Bioinformatics Framework for plant pathologists to deliver global food security outcomes. Australasian Plant Pathology, 41 (2). pp. 113-124.

Bellgard, M.I., Macgregor, A., Janon, F., Harvey, A., O'Leary, P., Hunter, A. and Dawkins, H. (2012) A modular approach to disease registry design: Successful adoption of an internet-based rare disease registry. Human Mutation, 33 (10). E2356-E2366.

Bittles, A.H. (2012) Consanguinity in context. Cambridge University Press, Cambridge, UK.

Bittles, A.H. and Black, M.L. (2012) Consanguineous marriage and its genetic outcomes. In: Kumar, D., (ed.) Genomics and Health in the Developing World. Oxford University Press, Oxford, England, pp. 103-115.

Black, M., Moolhuijzen, P., Chapman, B., Barrero, R., Howieson, J., Hungria, M. and Bellgard, M. (2012) The genetics of symbiotic nitrogen fixation: Comparative genomics of 14 rhizobia strains by resolution of protein clusters. Genes, 3 (1). pp. 138-166.

Diepeveen, D., Clarke, G.P.Y., Ryan, K., Tarr, A., Ma, W. and Appels, R. (2012) Molecular genetic mapping of NIR spectra variation. Journal of Cereal Science, 55 (1). pp. 6-14.

Edwards, D., Wilcox, S., Barrero, R.A., Fleury, D., Cavanagh, C.R., Forrest, K.L., Hayden, M.J., Moolhuijzen, P., Keeble-Gagnère, G., Bellgard, M.I., Lorenc, M.T., Shang, C.A., Baumann, U., Taylor, J.M., Morell, M.K., Langridge, P., Appels, R. and Fitzgerald, A. (2012) Bread matters: a national initiative to profile the genetic diversity of Australian wheat. Plant Biotechnology Journal, 10 (6). pp. 703-708.

Feuillet, C., Stein, N., Rossini, L., Praud, S., Mayer, K., Schulman, A., Eversole, K. and Appels, R. (2012) Integrating cereal genomics to support innovation in the Triticeae. Functional & Integrative Genomics, 12 (4). pp. 573-583.

Ge, P., Ma, C., Wang, S., Gao, L., Li, X., Guo, G., Ma, W. and Yan, Y. (2012) Comparative proteomic analysis of grain development in two spring wheat varieties under drought stress. Analytical and Bioanalytical Chemistry, 402 (3). pp. 1297-1313.

Ghamkhar, K., Isobe, S., Nichols, P.G.H., Faithfull, T., Ryan, M.H., Snowball, R., Sato, S. and Appels, R. (2012) The first genetic maps for subterranean clover (Trifolium subterraneum L.) and comparative genomics with T. pratense L. and Medicago truncatula Gaertn. to identify new molecular markers for breeding. Molecular Breeding, 30 (1). pp. 213-226.

Hunter, A.A., Macgregor, A.B., Szabo, T., Wellington, C. and Bellgard, M.I. (2012) Yabi: An online research environment for grid, high performance and cloud computing. Source Code for Biology and Medicine, 7 (1). p. 1.

Islam, S., Ma, W., Buirchell, B.J., Appels, R. and Yan, G. (2012) Genetic and environment interactions of seed storage proteins in narrow-leafed lupin (Lupinus angustifolius). Crop and Pasture Science, 63 (12). pp. 1066-1074.

Islam, S., Ma, W., Yan, G., Bekes, F. and Appels, R. (2012) Novel approaches to modifying wheat flour processing characteristics and health attributes: from genetics to food technology. In: Cauvain, S.P., (ed.) Breadmaking: Improving quality, Second Edition. Elsevier Inc., pp. 259-295.

Islam, S., Yan, G., Appels, R. and Ma, W. (2012) Comparative proteome analysis of seed storage and allergenic proteins among four narrow-leafed lupin cultivar. Food Chemistry, 135 (3). pp. 1230-1238.

Keeble-Gagnère, G., Nyström-Persson, J., Bellgard, M.I. and Mizuguchi, K. (2012) An open framework for extensible multi-stage bioinformatics software. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7632 (7632). pp. 106-117.

Lane, A.E., Black, M.L. and Wyatt, K.M. (2012) Toxicity and efficacy of a novel doxorubicin and carboplatin chemotherapy protocol for the treatment of canine appendicular osteosarcoma following limb amputation. Australian Veterinary Journal, 90 (3). pp. 69-74.

Li, J., Wang, S., Li, S., Ge, P., Li, X., Ma, W., Zeller, F.J., Hsam, S.L.K., Yan, Y. and Scoles, G. (2012) Variations and classification of toxic epitopes related to celiac disease among α-gliadin genes from fourAegilopsgenomes. Genome, 55 (7). pp. 513-521.

Liu, Y., He, Z., Appels, R. and Xia, X. (2012) Functional markers in wheat: current status and future prospects. Theoretical and Applied Genetics, 125 (1). pp. 1-10.

Lu, J., Huang, Y., Wang, Y., Li, Y., Zhang, Y., Wu, J., Zhao, F., Meng, S., Yu, X., Ma, Q., Song, M., Chang, N., Bittles, A.H. and Wang, W. (2012) Profiling plasma peptides for the identification of potential ageing biomarkers in Chinese Han adults. PLoS ONE, 7 (7). e39726.

Mappley, L.J, Black, M.L., AbuOun, M., Darby, A.C., Woodward, M.J., Parkhill, J., Turner, A., Bellgard, M.I., La, T., Phillips, N.D., La Ragione, R.M. and Hampson, D.J. (2012) Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC Genomics, 13 (1). p. 454.

McCooke, J.K., Appels, R., Barrero, R.A., Ding, A., Ozimek-Kulik, J.E., Bellgard, M.I., Morahan, G. and Phillips, J.K. (2012) A novel mutation causing nephronophthisis in the Lewis polycystic kidney rat localises to a conserved RCC1 domain in Nek8. BMC Genomics, 13 (1). p. 393.

Rodrigues, M., Hammond-Tooke, G., Kidd, A., Love, D., Patel, R., Dawkins, H., Bellgard, M. and Roxburgh, R. (2012) The New Zealand neuromuscular disease registry. Journal of Clinical Neuroscience, 19 (12). pp. 1749-1750.

Rodriguez-Valle, M., Vance, M., Moolhuijzen, P.M., Tao, X. and Lew-Tabor, A.E. (2012) Differential recognition by tick-resistant cattle of the recombinantly expressed Rhipicephalus microplus serine protease inhibitor-3 (RMS-3). Ticks and Tick-borne Diseases, 3 (3). pp. 159-169.

Shieh, J.T.C., Bittles, A.H. and Hudgins, L. (2012) Consanguinity and the risk of congenital heart disease. American Journal of Medical Genetics Part A, 158A (5). pp. 1236-1241.

Taniya, T., Tanaka, S., Yamaguchi-Kabata, Y., Hanaoka, H., Yamasaki, C., Maekawa, H., Barrero, R.A., Lenhard, B., Datta, M.W., Shimoyama, M., Bumgarner, R., Chakraborty, R., Hopkinson, I., Jia, L., Hide, W., Auffray, C., Minoshima, S., Imanishi, T. and Gojobori, T. (2012) A prioritization analysis of disease association by data-mining of functional annotation of human genes. Genomics, 99 (1). pp. 1-9.

Wang, K., An, X.L., Pan, L.P., Dong, K., Gao, L.Y., Wang, S.L., Xie, Z.Z., Zhang, Z., Appels, R., Ma, W. and Yan, Y.M. (2012) Molecular characterization of HMW-GS 1Dx3t and 1Dx4t genes from Aegilops tauschii and their potential value for wheat quality improvement. Hereditas, 149 (1). pp. 41-49.

Webster, H., Keeble-Gagnère, G., Dell, B., Fosu-Nyarko, J., Mukai, Y., Moolhuijzen, P., Bellgard, M., Jia, J., Kong, X., Feuillet, C., Choulet, F., International Wheat Genome Sequencing Consortium, and Appels, R. (2012) Genome-level identification of cell wall invertase genes in wheat for the study of drought tolerance. Functional Plant Biology, 39 (7). pp. 569-579.

2011

Appels, R. (2011) Getting the best from resources in Australia and China for wheat genome sequence analyses. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth

Appels, R. (2011) Investigating trait ontologies to facilitate integrating phenotype and genome sequence level information in wheat. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Appels, R., Adelson, D.L., Moolhuijzen, P., Webster, H., Barrero, R. and Bellgard, M. (2011) Genome studies at the PAG 2011 conference. Functional & Integrative Genomics, 11 (1). pp. 1-11.

Appels, R., Barsby, T., Risacher, T. and Bekes, F. (2011) Linking the genome to phenotypes in wheat: Advances in technologies and concepts. In: Angus, W., Bonjean, A. and Van Ginkel, M., (eds.) The World Wheat Book: A History of Wheat Breeding. Lavoisier Publishing, Paris, France, pp. 709-748.

Armstrong, L.J. and Diepeveen, D.A. (2011) Effective ICTs in agricultural value chains to improve food security: An international perspective. In: World Congress on Information and Communication Technologies (WICT) 2011, 11 - 14 December 2011, Mumbai, India pp. 1217-1222.

Barrero, R.A., Bellgard, M. and Zhang, X. (2011) Diverse approaches to achieving grain yield in wheat. Functional & Integrative Genomics, 11 (1). pp. 37-48.

Barrero, R.A., Chapman, B., Yang, Y., Moolhuijzen, P., Keeble-Gagnère, G., Zhang, N., Tang, Q., Bellgard, M.I. and Qiu, D. (2011) De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes. BMC Genomics, 12 (1). p. 600.

Barrero, R.A., Keeble-Gagnère, G., Zhang, B., Moolhuijzen, P., Ikeo, K., Tateno, Y., Gojobori, T., Guerrero, F.D., Lew-Tabor, A. and Bellgard, M. (2011) Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus. BMC Genomics, 12 (1). Article No. 328.

Bellgard, M., Moolhuijzen, P., Guerrero, F.D., Appels, R., Schibeci, D., Rodriguez-Valle, M., Barrero, R., Hunter, A. and Lew-Tabor, A. (2011) A new web-based genomics resource for bioinformatics analysis of Rhipicephalus (Boophilus) microplus: CattleTickBase. In: Ticks and Tick-borne Pathogens International Conference (TTP-7) 2011, 28 August - 2 September 2011, Zaragoza, Spain

Bellgard, M., Reeve, W., Yang, H., Zhang, J., Barrero, R. and Howieson, J. (2011) Interpreting sub-optimal nitrogen fixation in Lupinus angustifolius utilising the genome sequence of both symbiotic partners. In: 17th International Congress on Nitrogen Fixation, 27 November - 1 December 2011, Fremantle, WA.

Bellgard, M.I., Moolhuijzen, P.M., Guerrero, F.D., Schibeci, D., Rodriguez-Valle, M., Peterson, D.G., Dowd, S.E., Barrero, R., Hunter, A., Miller, R.J. and Lew-Tabor, A.E. (2011) CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus. International Journal for Parasitology, 42 (2). pp. 161-169.

Bittles, A.H. (2011) Assessing the influence of consanguinity on congenital heart disease. Annals of Pediatric Cardiology, 4 (2). pp. 111-116.

Bittles, A.H. (2011) Time to Get Real: Investigating Potential Beneficial Genetic Aspects of Consanguinity. Public Health Genomics, 14 (3). pp. 169-171.

Broomhall, M., Chedzey, H., Garcia, R., Lynch, M., Fearns, P., King, E., Wang, Z., Smith, G. and Schibeci, D. (2011) Ensemble dust detection techniques utilising a web-based workflow environment linked to a high performance computing system. In: 34th International Symposium on Remote Sensing of Environment (ISRSE2011): The GEOSS Era: Towards Operational Environmental Monitoring , 10 - 15 April 2011, Sydney Convention & Exhibition Centre, N.S.W

Chen, F., Zhang, S., Jiang, H., Ma, W., Korpelainen, H. and Li, C.Y. (2011) Comparative proteomics analysis of salt response reveals sex-related photosynthetic inhibition by salinity in Populus cathayana cuttings. Journal of Proteome Research, 10 (9). pp. 3944-3958.

Diepeveen, D., Clarke, P. and Appels, R. (2011) Using NIR fingerprints to identify genetic variation in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth

Egerbladh, I. and Bittles, A.H. (2011) Socioeconomic, demographic and legal influences on consanguinity and kinship in northern coastal Sweden 1780-1899. Journal of Biosocial Science, 43 (04). pp. 413-435.

Fearns, P., Bellgard, M., Broomhall, M., Chedzey, H., Garcia, R., Hunter, A., King, E., Lynch, M., Schibeci, D. and Smith, G. (2011) Web-based processing of remote sensing data in a workflows environment. In: 34th International Symposium on Remote Sensing of Environment (ISRSE2011): The GEOSS Era: Towards Operational Environmental Monitoring , 10 - 15 April 2011, Sydney Convention & Exhibition Centre, N.S.W

Gao, L., Yan, X., Li, X., Guo, G., Hu, Y., Ma, W. and Yan, Y. (2011) Proteome analysis of wheat leaf under salt stress by two-dimensional difference gel electrophoresis (2D-DIGE). Phytochemistry, 72 (10). pp. 1180-1191.

Geng, H., Zhang, Y., He, Z., Zhang, L., Appels, R., Qu, Y. and Xia, X. (2011) Molecular markers for tracking variation in lipoxygenase activity in wheat breeding. Molecular Breeding, 28 (1). pp. 117-126.

Guerrero, F.D., Andreotti, R., Perez de Leon, A., Moolhuijzen, P., Rodriguez-Valle, M. and Bellgard, M. (2011) Genome based selection of anti-cattle tick vaccine candidate antigens. In: Ticks and Tick-borne Pathogens International Conference (TTP-7) 2011, 28 August - 2 September 2011, Zaragoza, Spain

Guerrero, F.D., Dowd, S.E, Moolhuijzen, P., Bellgard, M., Andreotti, R. and Perez de Leon, A. (2011) Targeted studies of the genome, transcriptome and microbiome of the cattle tick, Rhipicephalus miroplus. In: 2011 Australian Society for Parasitology (ASP) Annual Conference, 10 - 13 July 2011, Cairns, Queensland

Hamamy, H., Antonarakis, S.E., Cavalli-Sforza, L.L., Temtamy, S., Romeo, G., Ten Kate, L.P., Bennett, R.L., Shaw, A., Megarbane, A., van Duijn, C., Bathija, H., Fokstuen, S., Engel, E., Zlotogora, J., Dermitzakis, E., Bottani, A., Dahoun, S., Morris, M.A., Arsenault, S., Aglan, M.S., Ajaz, M., Alkalamchi, A., Alnaqeb, D., Alwasiyah, M.K., Anwer, N., Awwad, R., Bonnefin, M., Corry, P., Gwanmesia, L., Karbani, G.A., Mostafavi, M., Pippucci, T., Ranza-Boscardin, E., Reversade, B., Sharif, S.M., Teeuw, M.E. and Bittles, A.H. (2011) Consanguineous marriages, pearls and perils: Geneva International Consanguinity Workshop Report. Genetics in Medicine, 13 (9). pp. 841-847.

Hampson, D.J., La, T., Bellgard, M.I. and Phillips, N.D. (2011) Vaccine strains of brachyspira hyodysenteriae. Patent, WO2010054437 .

Islam, S., Ma, W., Ma, J., Buirchell, B.J., Appels, R. and Yan, G. (2011) Diversity of seed protein among the Australian narrow-leafed lupin (Lupinus angustifolius L.) cultivars. Crop and Pasture Science, 62 (9). pp. 765-775.

Islam, S., Ma, W., Yan, G., Gao, L. and Appels, R. (2011) Differential recovery of lupin proteins from the gluten matrix in lupin–wheat bread as revealed by mass spectrometry and two-dimensional electrophoresis. Journal of Agricultural and Food Chemistry, 59 (12). pp. 6696-6704.

Jin, X., Harasymow, S., Bonnardeaux, Y., Tarr, A., Appels, R., Lance, R., Zhang, G. and Li, C. (2011) QTLs for malting flavour component associated with pre-harvest sprouting susceptibility in barley (Hordeum vulgare L.). Journal of Cereal Science, 53 (2). pp. 149-153.

Keeble, G., Black, M., Moolhuijzen, P., Barrero, R., Bellgard, M. and Appels, R. (2011) Structure–function studies in the wheat genome. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Lew-Tabor, A., Rodriguez-Valle, M., Kurscheid, S., Barrero, R., Gondro, C., Moolhuijzen, P.M., Morgan, J.A.T., Bruyeres, A.B., Zhang, B. and Bellgard, M.I. (2011) Microarray evidence for off target effects in tick RNA interference experiments, and the lack of strong correlation between DSRNA and antibody phenotypes in tick In vitro treatments for vaccine candidate screening. In: Ticks and Tick-borne Pathogens International Conference (TTP-7) 2011, 28 August - 2 September 2011, Zaragoza, Spain

Lew-Tabor, A.E., Kurscheid, S., Barrero, R., Gondro, C., Moolhuijzen, P.M., Rodriguez Valle, M., Morgan, J.A.T., Covacin, C. and Bellgard, M.I. (2011) Gene expression evidence for off-target effects caused by RNA interference-mediated gene silencing of Ubiquitin-63E in the cattle tick Rhipicephalus microplus. International Journal for Parasitology, 41 (9). pp. 1001-1014.

Mago, R., Brown-Guedira, G., Dreisigacker, S., Breen, J., Jin, Y., Singh, R., Appels, R., Lagudah, E.S., Ellis, J. and Spielmeyer, W. (2011) An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat. Theoretical and Applied Genetics, 122 (4). pp. 735-744.

Mago, R., Simkova, H., Brown-Guedira, G., Dreisigacker, S., Breen, J., Jin, Y., Singh, R., Appels, R., Lagudah, E. S., Ellis, J., Dolezel, J. and Spielmeyer, W. (2011) Erratum to: An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat. Theoretical and Applied Genetics, 122 (4). p. 745.

Mago, R., Tabe, L., McIntosh, R.A., Pretorius, Z., Kota, R., Paux, E., Wicker, T., Breen, J., Lagudah, E.S., Ellis, J.G. and Spielmeyer, W. (2011) A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew. Theoretical and Applied Genetics, 123 (4). pp. 615-623.

Moolhuijzen, P.M., Lew-Tabor, A.E., Morgan, J.A.T., Valle, M.R., Peterson, D.G., Dowd, S.E, Guerrero, F.D., Bellgard, M.I. and Appels, R. (2011) The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones. BMC Research Notes, 4 (1). p. 254.

Murray, D.C., Bunce, M., Cannell, B.L., Oliver, R., Houston, J., White, N.E., Barrero, R.A., Bellgard, M.I. and Haile, J. (2011) DNA-based faecal dietary analysis: A comparison of qPCR and high throughput sequencing approaches. PloS one, 6 (10). e25776.

Rodriguez-Valle, M., Moolhuijzen, P., Jarrett, S.J., Piper, E.K. and Lew-Tabor, A.E. (2011) B cell epitope prediction and the development of a cattle tick peptide screening array to study tick - host interaction. In: 2011 Australian Society for Parasitology (ASP) Annual Conference, 10 - 13 July 2011, Cairns, Queensland

Roessner, U., Nahid, A., Chapman, B., Hunter, A. and Bellgard, M. (2011) Metabolomics – The combination of analytical biochemistry, biology, and informatics. In: Murray, M-Y, (ed.) Comprehensive Biotechnology (Second Edition). Academic Press, pp. 447-459.

Shahidul, I., Ma, W., Appels, R., Buirchell, B.J. and Yan, G. (2011) Diversity of seed storage protein among narrow leafed lupin cultivars (Lupinus angustifolius L.) with reference to contributing to health. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Shahidul, I., Ma, W., Yan, G., Gao, L., Yan, Y. and Appels, R. (2011) Lupin–wheat bread protein: Modification of the bread matrix for improved health attributes. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

She, M., Ye, X., Yan, Y., Howit, C., Bellgard, M. and Ma, W. (2011) Gene networks in the synthesis and deposition of protein polymers during grain development of wheat. Functional & Integrative Genomics, 11 (1). pp. 23-35.

Sinha, S., Black, M.L., Agarwal, S., Das, R., Bittles, A.H. and Bellgard, M. (2011) ThalInd, a β-thalassemia and hemoglobinopathies database for India: defining a model country-specific and disease-centric bioinformatics resource. Human Mutation, 32 (8). pp. 887-893.

Sun, Y., He, Z., Ma, W. and Xia, X. (2011) Alternative splicing in the coding region of Ppo-A1 directly influences the polyphenol oxidase activity in common wheat (Triticum aestivum L.). Functional & Integrative Genomics, 11 (1). pp. 85-93.

Walker, C.K., Panozzo, J.F., Ford, R., Eckermann, P., Moody, D., Lehmensiek, A. and Appels, R. (2011) Chromosomal loci associated with endosperm hardness in a malting barley cross. Theoretical and Applied Genetics, 122 (1). pp. 151-162.

Wang, K., Gao, L., Wang, S., Zhang, Y., Li, X., Zhang, M., Xie, Z., Yan, Y., Bellgard, M. and Ma, W. (2011) Phylogenetic relationship of a new class of LMW-GS genes in the M genome of Aegilops comosa. Theoretical and Applied Genetics, 122 (7). pp. 1411-1425.

Wang, Z., King, E., Smith, G., Bellgard, M., Broomhall, M., Chedzey, H., Fearns, P., Garcia, R., Hunter, A., Lynch, M. and Schibeci, D. (2011) RS-YABI: A workflow system for Remote Sensing Processing in AusCover. In: MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty, 12 - 16 December, Perth, Western Australia pp. 1167-1173.

Webster, H., Fosu-Nyarko, J., Keeble, G., Moolhuijzen, P., Bellgard, M. and Appels, R. (2011) The cell wall invertase (IVR1) gene from wheat. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Zhang, J., Dell, B. and Appels, R. (2011) Stem carbohydrate remobilization as a key variable for wheat undergoing terminal drought. In: XVIII International Botanical Congress IBC2011, 23 - 30 July, Melbourne, Australia.

Zhang, J., Dell, B., Biddulph, B., Setter, T., Waters, I., Cakir, M., Drake-Brockman, F., Khan, N., Webster, H. and Appels, R. (2011) Drought tolerant pre-breeding in wheat. In: Wheat Breeding Assembly 2011, 24 - 26 August 2011, Citigate Hotel, Perth.

Zhang, J., Jia, J., Breen, J. and Kong, X. (2011) Recent insertion of a 52-kb mitochondrial DNA segment in the wheat lineage. Functional & Integrative Genomics, 11 (4). pp. 599-609.

Zhang, X-Q, Li, C., Panozzo, J., Westcott, S., Zhang, G., Tay, A., Appels, R., Jones, M. and Lance, R. (2011) Dissecting the telomere region of barley chromosome 5HL using rice genomic sequences as references: new markers for tracking a complex region in breeding. Molecular Breeding, 27 (1). pp. 1-9.

Zheng, W., Peng, Y., Ma, J., Appels, R., Sun, D. and Ma, W. (2011) High frequency of abnormal high molecular weight glutenin alleles in Chinese wheat landraces of the Yangtze-River region. Journal of Cereal Science, 54 (3). pp. 401-408.

Zou, Z.K., Hu, H.X., Song, M.S., Shen, Y.L., Guo, Xi.H., McElreavey, K., Bittles, A.H. and Wang, W. (2011) Semen quality analysis of military personnel from six geographical areas of the People’s Republic of China. Fertility and Sterility, 95 (6). pp. 2018-2023.

2010

Appels, R., Barrero, R., Keeble, G. and Bellgard, M. (2010) Advances in genome studies: the PAG 2010 conference. Functional & Integrative Genomics, 10 (1). pp. 1-9.

Bellgard, M., Guerrero, F.D., Moolhuijzen, P., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Gondro, C. and Lew-Tabor, A.E. (2010) Toward a genome sequence for Rhipicephalus (Boophilus) microplus: Cattle tick base available resources for the research community. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August , Melbourne, Australia

Bittles, A.H. and Black, M.L. (2010) Consanguineous marriage and human evolution. Annual Review of Anthropology, 39 (1). pp. 193-207.

Bittles, A.H. and Black, M.L. (2010) The impact of consanguinity on neonatal and infant health. Early Human Development, 86 (11). pp. 737-741.

Bittles, A.H. (2010) Consanguinity, genetic drift, and genetic diseases in populations with reduced numbers of founders. In: Speicher, M., Antonarakis, S.E. and Motulsky, A.G., (eds.) Vogel and Motulsky's human genetics: problems and approaches 4th edition. Springer Berlin Heidelberg, Heidelberg, pp. 507-528.

Bittles, A.H. and Black, M.L. (2010) Consanguinity, human evolution, and complex diseases. Proceedings of the National Academy of Sciences of the United States of America, 107 (Supp 1). pp. 1779-1786.

Bittles, A.H. and Black, M.L. (2010) Factors and forces influencing human variation. In: Mascie-Taylor, C.G.N., Yasukouchi, A. and Ulijaszek, S.J., (eds.) Human variation : from the laboratory to the field. CRC Press, Boca Raton, FL, pp. 1-17.

Bittles, A.H. and Collins, K.J. (2010) The Biology of Human Ageing. Cambridge University Press, Cambridge, England.

Bittles, A.H. and Glasson, E.J. (2010) Increased Longevity and the comorbidities associated with intellectual and developmental disability. In: Bax, M. and Gillberg, C., (eds.) Comorbidities In Developmental Disorders. Mac Keith Press, London, pp. 125-141.

Bittles, A.H. and Hamamy, H. (2010) Endogamy and consanguineous marriage in Arab populations. In: Teebi, A.S., (ed.) Genetic Disorders Among Arab Populations 2nd Edition. Springer Heidelberg Dordrecht London, New York, pp. 85-108.

Black, M.L., Sinha, S., Agarwal, S., Colah, R., Das, R., Bellgard, M. and Bittles, A.H. (2010) A descriptive profile of β-thalassaemia mutations in India, Pakistan and Sri Lanka. Journal of Community Genetics, 1 (3). pp. 149-157.

Breen, J. and Bellgard, M. (2010) Germin-like proteins (GLPs) in cereal genomes: gene clustering and dynamic roles in plant defence. Functional & Integrative Genomics, 10 (4). pp. 463-476.

Breen, J., Li, D., Dunn, D.S., Bekes, F., Kong, X., Zhang, J., Jia, J., Wicker, T., Mago, R., Ma, W., Bellgard, M. and Appels, R. (2010) Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain. BMC Plant Biology, 10 (1). p. 99.

Breen, J., Wicker, T., Kong, X., Zhang, J., Ma, W., Paux, E., Feuillet, C., Appels, R. and Bellgard, M. (2010) A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block. BMC Plant Biology, 10 (1). p. 98.

Choulet, F., Wicker, T., Rustenholz, C., Paux, E., Salse, J., Leroy, P., Schlub, S., le Paslier, M. -C., Magdelenat, G., Gonthier, C., Couloux, A., Budak, H., Breen, J., Pumphrey, M., Liu, S., Kong, X., Jia, J., Gut, M., Brunel, D., Anderson, J.A., Gill, B.S., Appels, R., Keller, B. and Feuillet, C. (2010) Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell, 22 (6). pp. 1686-1701.

Diepeveen, D., Clarke, G.P.Y., Bellgard, M. and Appels, R. (2010) Understanding the genetic components of NIR spectra. In: ASC 2010 Australian Statistical Conference Statistics in the West: Understanding our World., 6 - 10 December, Fremantle, Western Australia

Guerrero, F.D., Moolhuijzen, P., Peterson, D.G., Bellgard, M.I., Schibeci, D., Hunter, A., Rodriguez-Valle, M., Barrero, R., Nene, V.M. and Lew-Tabor, A.E. (2010) Cot filtration approach for advancing genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. In: Entomology 2010: ESA 58th Annual Meeting, 12 - 15 December 2010, San Diego, CA

Guerrero, F.D., Moolhuijzen, P., Peterson, D.G., Bidwell, S., Caler, E., Bellgard, M., Nene, V.M. and Djikeng, A. (2010) Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. BMC Genomics, 11 (1). p. 374.

Guerrero, F.D., Moolhuijzen, P., Peterson, D.G. and Nene, V.M. (2010) Cot-filtration approach for advancing the genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August , Melbourne, Australia

Kate, L.P., Al-Gazali, L., Anand, S., Bittles, A., Cassiman, J-J, Christianson, A., Cornel, M.C., Hamamy, H., Kääriäinen, H., Kristoffersson, U., Marais, D., Penchaszadeh, V.B., Rahman, P. and Schmidtke, J. (2010) Community genetics. Its definition 2010. Journal of Community Genetics, 1 (1). pp. 19-22.

Lew-Tabor, A., Rodriguez-Valle, M., Moolhuijzen, P. and Bruyeres, A.G. (2010) Screening of Anti-peptide antibodies in vitro to identify potential cattle tick vaccine antigens. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August , Melbourne, Australia

Lew-Tabor, A.E., Moolhuijzen, P.M., Vance, M.E., Kurscheid, S., Valle, M.R., Jarrett, S., Minchin, C.M., Jackson, Louise A., Jonsson, N.N. and Bellgard, M.I. (2010) Suppressive subtractive hybridization analysis of Rhipicephalus (Boophilus) microplus larval and adult transcript expression during attachment and feeding. Veterinary Parasitology, 167 (2-4). pp. 304-320.

Matsumura, H., Yoshida, K., Luo, S., Kimura, E., Fujibe, T., Albertyn, Z., Barrero, R.A., Krüger, D.H., Kahl, G., Schroth, G.P. and Terauchi, R. (2010) High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. PLoS ONE, 5 (8). e12010.

Moolhuijzen, P., Kulski, J.K., Dunn, D.S., Schibeci, D., Barrero, R., Gojobori, T. and Bellgard, M. (2010) The transcript repeat element: the human Alu sequence as a component of gene networks influencing cancer. Functional & Integrative Genomics, 10 (3). pp. 307-319.

Moolhuijzen, P., Lew-Tabor, A., Guerrero, F.D., Bellgard, M. and Appels, R. (2010) De-novo assembly of the complex Rhipicephalus (Boophilus) microplus available genome. In: XIIth International Conference for Parasitology (ICOPA), 15 - 20 August , Melbourne, Australia

Nelson, M.N., Moolhuijzen, P.M., Boersma, J.G., Chudy, M., Lesniewska, K., Bellgard, M., Oliver, R.P., Swiecicki, W., Wolko, B., Cowling, W.A. and Ellwood, S.R. (2010) Aligning a new reference genetic map of lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus. DNA Research, 17 (2). pp. 73-83.

Rodriguez-Valle, M., Lew-Tabor, A., Gondro, C., Moolhuijzen, P., Vance, M., Guerrero, F.D., Bellgard, M. and Jorgensen, W. (2010) Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and Bos taurus cattle. BMC Genomics, 11 (1). p. 437.

Wanchanthuek, P., Bellgard, M., La, T., Ryan, K., Moolhuijzen, P., Chapman, B., Black, M.L., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J. (2010) The complete genome sequence of the pathogenic intestinal spirochete Brachyspira pilosicoli and comparison with other Brachyspira genomes. PLoS ONE, 5 (7). pp. 1-16.

Zhang, S., Chen, F., Peng, S., Ma, W., Korpelainen, H. and Li, C. (2010) Comparative physiological, ultrastructural and proteomic analyses reveal sexual differences in the responses of Populus cathayana under drought stress. Proteomics, 10 (14). pp. 2661-2677.

2009

Appels, R. (2009) Diversity of genome research at the 2009 Plant and Animal Genome Conference. Functional & Integrative Genomics, 9 (1). pp. 1-6.

Appels, R. and Pickford, A. (2009) The strategic importance of agricultural innovation : A case study of wheat. Future Directions International, Nedlands, W.A.

Bellgard, M., Wanchanthuek, P., La, T., Ryan, K., Moolhuijzen, P., Albertyn, Z., Shaban, B., Motro, Y., Dunn, D.S., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D. and Hampson, D.J. (2009) Genome sequence of the pathogenic intestinal spirochete Brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. PLoS ONE, 4 (3). e4641.

Bittles, A. (2009) The biology of ageing. In: Gelder, M., Andreasen, N., Lopez-Ibor, J. and Geddes, J., (eds.) New Oxford Textbook of Psychiatry, 2nd edition. Oxford University Press, Oxford, pp. 1507-1511.

Bittles, A.H. (2009) Commentary: The background and outcomes of the first-cousin marriage controversy in Great Britain. International Journal of Epidemiology, 38 (6). pp. 1453-1458.

Bittles, A.H. and Black, M.L. (2009) Human adaptation. In: Human Diversity: design for life: Proceedings of the 9th International Congress of Physiological Anthropology, 22 - 26 August 2008, Delft, The Netherlands

Black, M.L., Moolhuijzen, P., Bellgard, M. and Bittles, A.H. (2009) A bioinformatics approach to the study of autosomal recessive non syndromic intellectual disability. In: Genes for Health, 2 - 6 May 2009, Fremantle, Australia.

Campbell, H., Rudan, I., Bittles, A.H. and Wright, A.F. (2009) Human population structure, genome autozygosity and human health. Genome Medicine, 1 (9). p. 91.

Hampson, D.J., La, T., Bellgard, M.I. and Phillips, N.D. (2009) Novel sequences of Brachyspira, immunogenic compositions, methods for preparation and use thereof. Patent, WO/2009/105833 .

Jarrett, S.J., Jackson, L.A. and Moolhuijzen, P. (2009) Biotinylated gut membrane proteins: A technique used to isolate and identify proteins on the surface of the tick gut. In: ASP & ARC/NHMRC Research Network for Parasitology Annual Conference, 12 - 15 July 2009, University of Sydney, Sydney.

Jia, Q., Zhang, J., Westcott, S., Zhang, X-Q, Bellgard, M., Lance, R. and Li, C. (2009) GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional & Integrative Genomics, 9 (2). pp. 255-262.

Kawazoe, A., Jin, L., Shigematsu, M., Bekki, D., Barrero, R.A., Taniguchi, K. and Collier, N. (2009) The development of a schema for semantic annotation: Gain brought by a formal ontological method. Applied Ontology, 4 (1). pp. 5-20.

Konik-Rose, C.M., Rahman, S., Appels, R., Moss, R., McMaster, G., Marshall, D.R. and Stoddard, F.L. (2009) Starch characterisation and variability in GBSS loci of synthetic hexaploid wheats and their durum and Aegilops tauschii parents. Euphytica, 167 (2). pp. 203-216.

Kurscheid, S., Lew-Tabor, A.E., Rodriguez Valle, M., Bruyeres, A.G., Doogan, V.J, Munderloh, U.G., Guerrero, F.D., Barrero, R.A. and Bellgard, M.I. (2009) Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila. BMC Molecular Biology, 10 (1). p. 26.

La, T., Phillips, N.D., Harland, B.l., Wanchanthuek, P., Bellgard, M.I. and Hampson, D.J. (2009) Multilocus sequence typing as a tool for studying the molecular epidemiology and population structure of Brachyspira hyodysenteriae. Veterinary Microbiology, 138 (3-4). pp. 330-338.

Lehmensiek, A., Bovill, W., Wenzl, P., Langridge, P. and Appels, R. (2009) Genetic mapping in the Triticeae. In: Muehlbauer, G.J. and Feuillet, C., (eds.) Genetics and Genomics of the Triticeae. Springer US, New York, pp. 201-235.

Ma, W., Anderson, O., Kuchel, H., Bonnardeaux, Y., Collins, H., Morell, M.K., Langridge, P. and Appels, R. (2009) Genomics of quality traits. In: Muehlbauer, G.J. and Feuillet, C., (eds.) Genetics and Genomics of the Triticeae. Springer US, New York, pp. 611-652.

Metcalfe, S.A., Bittles, A.H., O’Leary, P. and Emery, J. (2009) Australia: Public Health Genomics. Public Health Genomics, 12 (2). pp. 121-128.

Moolhuijzen, P., Appels, R., Lew-Tabor, A., Rodriguez-Valle, M., Morgan, J., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) De-novo sequence assembly and characterization of the complex genome of five BACS from Rhipicephalus microplus. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Lew-Tabor, A., Rodriguez-Valle, M., Guerrero, F.D., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Transcriptome wide high throughput bioninformatics pipeline for vaccine candidate identification. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Moolhuijzen, P., Ryan, K., Lew-Tabor, A., Hunter, A., Schibeci, D. and Bellgard, M. (2009) Bioinformatics resource to capture, integrate and analyse diverse data types. In: Bioinformatics Australia (BA2009) 2009, 29 - 30 October 2009, Melbourne, VIC.

Morgan, J.A.T., Corley, S.W., Jackson, L.A., Lew-Tabor, A.E., Moolhuijzen, P.M. and Jonsson, N.N. (2009) Identification of a mutation in the para-sodium channel gene of the cattle tick Rhipicephalus (Boophilus) microplus associated with resistance to synthetic pyrethroid acaricides. International Journal for Parasitology, 39 (7). pp. 775-779.

Morgan, J.A.T., Corley, S.W., Jackson, L.A., Lew-Tabor, A.E., Moolhuijzen, P.M. and Jonsson, N.N. (2009) Molecular detection of resistance to synthetic pyrethroid acaricides in the Australian cattle tick, Rhipicephalus (Boophilus) microplus. In: 2009 ASP & ARC/NHMRC Network for Parasitology Annual Conference, 12 - 15 July 2009, University of Sydney, Sydney

Motro, Y., La, T., Bellgard, M., Dunn, D.S., Phillips, N.D. and Hampson, D.J. (2009) Identification of genes associated with prophage-like gene transfer agents in the pathogenic intestinal spirochaetes Brachyspira hyodysenteriae, Brachyspira pilosicoli and Brachyspira intermedia. Veterinary Microbiology, 134 (3-4). pp. 340-345.

Piper, E.K., Jackson, L.A., Bielefeldt-Ohmann, H., Constantinoiu, C.C., Gondro, C., Jarrett, S.J., Jorgensen, W.K., Lew-Tabor, A.E., Moolhuijzen, P., Vance, M.E., Weiss, O. and Jonsson, N.N. (2009) Resistance to cattle tick (Rhipicephalus microplus) infestation: Immunological or physiological? In: 2009 ASP & ARC/NHMRC Network for Parasitology Annual Conference, 12 - 15 July 2009, University of Sydney, Sydney

Piper, E.K., Jonsson, N.N., Gondro, C., Lew-Tabor, A.E., Moolhuijzen, P., Vance, M.E. and Jackson, L.A. (2009) Immunological profiles of Bos taurus and Bos indicus cattle infested with the cattle tick, Rhipicephalus (Boophilus) microplus. Clinical and Vaccine Immunology, 16 (7). pp. 1074-1086.

Sidhu, A.S. and Bellgard, M. (2009) Protein data integration problem. Studies in Computational Intelligence, 224 . pp. 55-69.

Sidhu, A.S., Bellgard, M. and Dillon, T.S. (2009) Current trends in biomedical data and applications. Studies in Computational Intelligence, 224 . pp. 1-9.

Sidhu, A.S., Bellgard, M.I. and Dillon, T.S. (2009) Classification of information about proteins. In: Edwards, D., Stajich, J. and Hansen, D., (eds.) Bioinformatics: Tools and Applications. Springer New York, pp. 243-258.

Sinha, S., Black, M.L., Agarwal, S., Colah, R., Das, R., Ryan, K., Bellgard, M. and Bittles, A.H. (2009) Profiling β-thalassaemia mutations in India at state and regional levels: implications for genetic education, screening and counselling programmes. The HUGO Journal, 3 (1-4). pp. 51-62.

Song, Y., La, T., Phillips, N.D., Bellgard, M.I. and Hampson, D.J. (2009) A reverse vaccinology approach to swine dysentery vaccine development. Veterinary Microbiology, 137 (1-2). pp. 111-119.

Wanchanthuek, Phatthanaphong (2009) Comparative genomics to investigate genome function and adaptations in the newly sequenced Brachyspira hyodysenteriae and Brachyspira pilosicoli. PhD thesis, Murdoch University.

Yan, Y.M., Jiang, Y., An, X.L., Pei, Y.H., Li, X.H., Zhang, Y.Z., Wang, A.L., He, Z., Xia, X., Bekes, F. and Ma, W. (2009) Cloning, expression and functional analysis of HMW glutenin subunit 1By8 gene from Italy pasta wheat (Triticum turgidum L. ssp. durum). Journal of Cereal Science, 50 (3). pp. 398-406.

Zhang, J., Dell, B., Conocono, E., Waters, I., Setter, T. and Appels, R. (2009) Water deficits in wheat: fructan exohydrolase (1-FEH) mRNA expression and relationship to soluble carbohydrate concentrations in two varieties. New Phytologist, 181 (4). pp. 843-850.

2008

Ai-Zahery, N., Edkins, E., Khoo, S-K, Hayden, C., Ismail, H., Semino, O., Le Souef, P., Goldblatt, J. and Bittles, A.H. (2008) A preliminary study of the spectrum of B-Globin gene mutations amount Thalassaemia patients in Iraq. In: International Conference on Medical and Community Genetics, 15 - 17 February, Chandigarh, India.

Barrero, R.A., Albertyn, Z., Hercus, C., Hunter, A., Dennis, L., Shannon, M.F. and Bellgard, M. (2008) Benchmarking tools for aligning millions of short reads and implementation of a web-based data processing interface. In: 19th International Conference on Genome Informatics (GIW2008), 1 - 3 December 2008, Gold Coast, QLD.

Bellgard, M., Hampson, D.J. and La, T. (2008) Genes and proteins of Brachyspira hyodysenteriae and uses thereof. Patent, WO/2008/017636 .

Bellgard, M., Hampson, D.J. and La, T. (2008) Genes and proteins of brachyspira hyodysenteriae and use of same for diagnosis and therapy. Patent: AU2006245965 .

Bellgard, M., Hampson, D.J. and La, T. (2008) Novel sequences of Brachyspira, immunogenic compositions, methods for preparation and use thereof. Patent, EP20080152093 .

Bittles, A., Murphy, M. and Reher, D. (2008) Inherited dimensions of human populations in the past. Human Nature, 19 (1). pp. 1-6.

Bittles, A.H. (2008) Biological aspects of of human ageing. In: Jacoby, R., Oppenheimer, C., Dening, T. and Thomas, A., (eds.) Oxford Textbook of Old Age Psychiatry. Oxford University Press, Oxford, pp. 3-15.

Bittles, A.H. (2008) A community genetics perspective on consanguineous marriage. Community Genetics, 11 (6). pp. 324-30.

Black, M.L. and Bittles, A.H. (2008) Bayesian analysis in molecular anthropology. In: Koven, V.T., (ed.) Population genetics research progress. Nova Science Publisher, New York, pp. 205-227.

Black, M.L., Dunn, D., Tangtulyangkul, P., Hunter, A., Bellgard, M. and Bittles, A.H. (2008) Combining bioinformatics and population genetics in the study of Thalassaemia. In: International Conference on Medical and Community Genetics, 15 - 17 February, Chandigarh, India.

Black, M.L., Tangtulyangkul, P., Hunter, A., Bellgard, M. and Bittles, A.H. (2008) The Consang-Mashup Database System for the study of consanguinity. In: International Conference on Medical and Community Genetics, 15 - 17 February, Chandigarh, India.

Candelaria, P., Khoo, S.K., Hayden, C., Stepanov, V., Al-Zahery, N., Backer, V., Hagel, I., Musk, A.W., Levin, M., Black, M.L., Bittles, A.H., Goldblatt, J. and LeSouef, P.N. (2008) Evolved Th2 immune response bias in humans due to adaptation to climate. In: Keystone Symposia on Molecular and Cellular Biology: Molecular Evolution as a Driving Force in Infectious Diseases (D4), 8 - 13 April 2008, Breckenridge, Colorado.

Charles, M., Belcram, H., Just, J., Huneau, C., Viollet, A., Couloux, A., Segurens, B., Carter, M., Huteau, V., Coriton, O., Appels, R., Samain, S. and Chalhoub, B. (2008) Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics, 180 (2). pp. 1071-1086.

Crawford, A.C., Shaw, K., Stefanova, K., Lambe, W., Ryan, K., Wilson, R.H., Barclay, I., McLean, R. and Francki, M. (2008) A molecular toolbox for xanthophyll genes in wheat. In: 11th International Wheat Genetics Symposium, 24 - 29 August, Brisbane.

Dayalan, S., Hunter, A., Macgregor, A., Takayama, N., Bellgard, M., Bacic, T. and Likic, V. (2008) Scientific data management and workflow system for geographically distributed virtual organization. In: eResearch Australasia Conference 2008, 28 September - 3 October 2008, Melbourne, Australia.

Diepeveen, D., Armstrong, L., Clarke, P., Abrecht, D., Appels, R. and Bellgard, M. (2008) Applying data mining tools to improve grain quality for growers. In: 2008 Agribusiness Crop Updates: Cereal Updates, 13 - 14 February 2008, Burswood Entertainment Complex, Perth, W.A

Egerbladh, I. and Bittles, A. (2008) The influence of consanguineous marriage on reproductive behavior and early mortality in northern coastal Sweden, 1780–1899. In: Bengtsson, T. and Mineau, G.P., (eds.) Kinship and Demographic Behavior in the Past. Springer, Dordrecht, The Netherlands, pp. 220-244.

Glasson, E. and Bittles, A.H. (2008) The impact of ageing in people with intellectual and developmental disability. In: Bodzsár, E.B. and Susanne, C., (eds.) Ageing Related Problems in Past and Present Populations. Plantin Publications & Press Ltd, Budapest, Hungary, pp. 27-43.

Hunter, A., Macgregor, A., Takayama, N., Smith, C., Wellington, C., Hammond, B., Albertyn, Z., Schibeci, D. and Bellgard, M. (2008) YABI: A rich internet application for simplifying -omics workflow creation, customisation and data analysis. In: Cambridge Healthtech Institute 2nd Annual Next Generation Sequencing: Platforms Applications and Case Studies, 23 - 24 April 2008, San Diego, CA.

Jackson, L.A., Piper, E.K., Moolhuijzen, P., Gondro, C., Jones, M.E., Jarrett, S.J., Lew-Tabor, A.E. and Jonsson, N.N. (2008) Gene expression and immune studies in Bos Taurus and Bos Indicus cattle infested with Rhipicedphalus microplus. In: 3rd International Symposium on Animal Functional Genomics (ISAFG), 7 - 9 April 2008, Edinburgh, Scotland.

Jones, M.E., Piper, E.K., Minchin, C.M., Zhang, B., Moolhuijzen, P.M., Gondro, C., Jonsson, N.N., Bellgard, M.I., Lew-Tabor, A.E. and Jackson, L.A. (2008) Up-regulated expression of Interleukin-2 Receptor alpha in tick resistant cattle. In: ComBio 2008, 21 - 25 September 2008, Canberra, A.C.T

Jones, M.E., Zhang, B., Minchin, C.M., Jackson, L.A. and Lew-Tabor, A.E. (2008) Primary bovine cell culture: gene expression, gene knockdown and in vitro immune response studies. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina.

Kongsuwan, K., Piper, E.K., Bagnall, N.H., Ryan, K., Moolhuijzen, P., Bellgard, M., Lew, A., Jackson, L. and Jonsson, N.N. (2008) Identification of genes involved with tick infestation in Bos taurus and Bos indicus. Developments in Biologicals, 132 . pp. 77-88.

Kurscheid, S., Rodriguez-Valle, M., Guerrero, F., Lew, A. and Bellgard, M. (2008) Serine proteinase inhibitor families in Rhipicephalus microplus. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina.

Kurscheid, S., Rodriguez-Valle, M., Moolhuijzen, P.M., Barrero, R., Guerrero, F.D., Lew-Tabor, A.E. and Bellgard, M.I. (2008) In silico prediction of tick vaccine candidates. In: ASP & ARC/NHMRC Research Network for Parasitology Annual Conference, 6 - 9 July 2008, Glenelg, S.A..

Kurscheid, S., Rodriguez-Valle, M., Zhang, B., Bruyeres, A., Minchin, C., Barrero, R., Guerrero, F., Bellgard, M. and Lew, A. (2008) Putative RNA interference pathway in ticks. In: VI International Conference on Ticks and Tick-borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina.

Lew-Tabor, A., Jackson, L., Rodriguez-Valle, M., Piper, E., Kurscheid, S., Moolhuijzen, P., Constantinoiu, C., Jones, M., Gondro, C., Bruyeres, A., Jarrett, S., Minchin, C., Venus, B., Zhang, B., Bellgard, M., Guerrero, F. and Jonsson, N. (2008) Reverse vaccinology approach for the identification of novel Rhipicephalus (boophilus) microplus vaccine candidates. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina

Lew-Tabor, A.E., Jackson, L.A., Rodriguez-Valle, M., Kurscheid, S., Moolhuijzen, P.M., Jones, M.E., Piper, E.K., Constantinoiu, C., Jorgensen, W.K., Jonsson, N.N., Bellgard, M.I. and Guerrero, F.D. (2008) Reverse vaccinology approach to identify Rhipicephalus (Boophilus) microplus tick vaccine candidates. In: ASP & ARC/NHMRC Research Network for Parasitology Annual Conference, 6 - 9 July 2008, Glenelg, S.A.

McNeil, M.D., Kota, R., Paux, E., Dunn, D., McLean, R., Feuillet, C., Li, D., Kong, X., Lagudah, E., Zhang, J.C., Jia, J.Z., Spielmeyer, W., Bellgard, M. and Appels, R. (2008) BAC-derived markers for assaying the stem rust resistance gene, Sr2, in wheat breeding programs. Molecular Breeding, 22 (1). pp. 15-24.

Nelson, M., Boersma, J., Chudy, M., Lesniewska, K., Ellwood, S., Phan, H., Moolhuijzen, P., Bellgard, M., Oliver, R., Swiecicki, W., Wolko, B. and Cowling, W. (2008) A dense reference map of the Lupinus Angustifolius L. Genome: A foundation for building lupin genome research. In: 12th International Lupin Conference, 14 - 18 September, Perth, Western Australia pp. 255-258.

Piper, E.K., Jackson, L.A., Bagnall, N.H., Kongsuwan, K.K., Lew, A.E. and Jonsson, N.N. (2008) Gene expression in the skin of Bos taurus and Bos indicus cattle infested with the cattle tick, Rhipicephalus (Boophilus) microplus. Veterinary Immunology and Immunopathology, 126 (1-2). pp. 110-119.

Piper, E.K., Jackson, L.A., Constantinoiu, C.C., Gondro, C., Lew-Tabor, A.E., Moolhuijzen, P., Jorgensen, W.K., Bellgard, M. and Jonsson, N.N. (2008) Gene expression in the skin of tick-resistant and tick-susceptible cattle prior to and following infestation with Rhipicephalus microplus. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina

Piper, E.K., Jonsson, N., Constantinoiu, C., Jackson, L.A., Lew-Tabor, A.E., Jorgensen, W.K., Moolhuijzen, P., Bellgard, M.I. and Gondro, C. (2008) Gene expression in the skin of cattle following infestation with the cattle tick Rhipicephalus microplus. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina

Rodriguez-Valle, M., Lew-Tabor, A., Gondro, C., Kurscheid, S., Jarrett, S., Minchin, C., Moolhuijzen, P., Bellgard, M. and Guerrero, F. (2008) Transcriptome analysis of Rhipicephalus (Boophilus) microplus. In: VIth International Conference on Ticks and Tick-Borne Pathogens, 21 - 26 September 2008, Buenos Aires, Argentina

Saggar, A.K. and Bittles, A.H. (2008) Consanguinity and child health. Paediatrics and Child Health, 18 (5). pp. 244-249.

Spielmeyer, W., Singh, R.P., McFadden, H., Wellings, C.R., Huerta-Espino, J., Kong, X., Appels, R. and Lagudah, E.S. (2008) Fine scale genetic and physical mapping using interstitial deletion mutants of Lr34 /Yr18: a disease resistance locus effective against multiple pathogens in wheat. Theoretical and Applied Genetics, 116 (4). pp. 481-490.

Tanaka, T., Antonio, B.A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H., Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J.-i., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y-C, Wei, F-J, Hsing, Y-i, Zhao, Q., Bin, H., Kramer, M.R., McCombie, R.W., Lonsdale, D., O’Donovan, C.C., Whitfield, E.J., Apweiler, R., Koyanagi, K.O., Khurana, J.P., Raghuvanshi, S., Singh, N.K., Tyagi, A.K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R.M., Hoen, D.R., Bureau, T.E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R.A., Sato, Y., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., OOta, S., Fuks, G., Messing, J., Christie, K.R., Lieberherr, D., Kim, H-R, Zuccolo, A., Wing, R.A., Nobuta, K., Green, P.J., Lu, C., Meyers, B.C., Chaparro, C., Piegu, B., Panaud, O. and Echeverria, M. (2008) The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research, 36 (Supp 1). D1028-D1033.

Wanchanthuek, P., Hampson, D. and Bellgard, M. (2008) Comparison of Brachyspira central metabolism pathways. In: 19th International Conference on Genome Informatics (GIW2008), 1 - 3 December 2008, Gold Coast, QLD.

Wanchanthuek, P., Hampson, D. and Bellgard, M. (2008) Conservation and metabolic functional significance of overlapping gene in the bacterial genomes. In: The 20th Annual Meeting and International Conference of the Thai Society for Biotechnology, 14 - 17 October 2008, Maha Sarakham, Thailand.

Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J-I, Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H-W, Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K-B, Lin, Y-C, Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O’Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N-S, Yoo, H-S, De Souza, S.J., Bonaldo, M., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Suzuki, Y., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T. and Gojobori, T. (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Research, 36 (Supp 1). D793-D799.

Zhang, J., Huang, S., Fosu-Nyarko, J., Dell, B., McNeil, M., Waters, I., Moolhuijzen, P., Conocono, E. and Appels, R. (2008) The genome structure of the 1-FEH genes in wheat (Triticum aestivum L.): new markers to track stem carbohydrates and grain filling QTLs in breeding. Molecular Breeding, 22 (3). pp. 339-351.

2007

Appels, R. (2007) The annotation of gene HgAffx.13168.1.S1_at. Functional & Integrative Genomics, 7 (4). p. 303.

Appels, R., Cakir, M., Barclay, I., Conocono, E., Drake-Brockman, F., McLean, R.B., Setter, T., Waters, I.E. and Wilson, R.B. (2007) Physiological and genetic studies to improve terminal drought tolerance in wheat. In: ACPFG Genomics Symposium: The Genetics of Drought, 22 - 24 October 2007, University of Adelaide, Adelaide.

Bellgard, M. (2007) Trends impacting Bioinformatics on the grid. In: APAC07 Conference, 8 - 12 October 2007, Perth, Western Australia

Bellgard, M., Hampson, D.J. and La, T. (2007) Novel Brachyspira pilosicoli genes and proteins and uses thereof. Patent, WO/2007/113001 .

Bittles, A.H., Black, M.L. and Wang, W. (2007) Physical anthropology and ethnicity in Asia: The transition from anthropometry to genome-based studies. Journal of Physiological Anthropology, 26 (2). pp. 77-82.

Bittles, A.H., Bower, C., Hussain, R. and Glasson, E.J. (2007) The four ages of Down syndrome. The European Journal of Public Health, 17 (2). pp. 221-225.

Black, M.L., Wang, W. and Bittles, A.H. (2007) Unity and diversity: Genetic studies on the population of China. In: Santos, C. and Lima, M., (eds.) Recent advances in molecular biology and evolution : applications to biological anthropology. Research Signpost, Kerala, India, pp. 347-372.

Cakir, M., McLean, R., Wilson, R., Barclay, I., Moore, C., Loughman, R., Haley, S., Kidwell, K., Anderson, J., Sorrells, M., Manes, Y., Hayden, M., Feuillet, C., William, M., Hunter, A. and Bellgard, M. (2007) Genome level targeted breeding in wheat. In: Plant & Animal Genomes XV Conference, 13 - 17 January 2007, San Diego, CA

Chen, J., Lan, P., Tarr, A., Yan, Y.M., Francki, M., Appels, R. and Ma, W. (2007) Matrix-assisted laser desorption/ionization time-of-flight based wheat gliadin protein peaks are useful molecular markers for wheat genetic study. Rapid Communications in Mass Spectrometry, 21 (17). pp. 2913-2917.

Dunn, D.S., Choy, M.K., Phipps, M.E. and Kulski, J.K. (2007) The distribution of major histocompatibility complex class I polymorphic Alu insertions and their associations with HLA alleles in a Chinese population from Malaysia. Tissue Antigens, 70 (2). pp. 136-143.

Greene, W.K., Sontani, Y., Sharp, M.A., Dunn, D.S., Kees, U.R. and Bellgard, M.I. (2007) A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene. Gene, 391 (1-2). pp. 223-232.

Hampson, D.J., Bellgard, M. and La, T. (2007) Novel genes and proteins of Brachyspira hyodysenteriae and use of same for diagnosis and therapy. Patent, WO/2007/107323 .

Hiew, H.L., Bellgard, M., Pham, T.D. and Zhou, X. (2007) A Bioinformatics Reference Model: Towards a Framework for Developing and Organising Bioinformatic Resources. In: 2007 International Symposium on Computational Models for Life Sciences, CMLS '07, 17-19 December 2007, Gold Coast, QLD pp. 349-359.

Kikuchi, T., Naruse, T.K., Onizuka, M., Li, S., Kimura, T., Oka, A., Morishima, Y., Kulski, J.K., Ichimiya, S., Sato, N. and Inoko, H. (2007) Mapping of susceptibility and protective loci for acute GVHD in unrelated HLA-matched bone marrow transplantation donors and recipients using 155 microsatellite markers on chromosome 22. Immunogenetics, 59 (2). pp. 99-108.

Li, X., Wang, A., Xiao, Y., Yan, Y., He, Z., Appels, R., Ma, W., Hsam, S.L.K. and Zeller, F.J. (2007) Cloning and characterization of a novel low molecular weight glutenin subunit gene at the Glu-A3 locus from wild emmer wheat (Triticum turgidum L. var. dicoccoides). Euphytica, 159 (1-2). pp. 181-190.

McLean, R., Barclay, I., Wilson, R., Appels, R., Cakir, M., Devlin, G. and Li, D. (2007) Marker implementation in the Department of Agriculture, Western Australia wheat breeding program. In: Buck, H.T., Nisi, J.E. and Salomón, N., (eds.) Wheat Production in Stressed Environments. Springer Netherlands, pp. 737-746.

Moolhuijzen, P., Dunn, D.S., Bellgard, M., Carter, M., Jia, J., Kong, X., Gill, B.S., Feuillet, C., Breen, J. and Appels, R. (2007) Wheat genome structure and function: genome sequence data and the International Wheat Genome Sequencing Consortium. Australian Journal of Agricultural Research, 58 (6). pp. 470-475.

Stanton, J., Macgregor, A.B., Mason, C., Dameh, M. and Green, D. (2007) Building comparative gene expression databases for the mouse preimplantation embryo using a pipeline approach to UniGene. Molecular Human Reproduction, 13 (10). pp. 713-720.

Sullivan, S.G., Hussain, R., Glasson, E.J. and Bittles, A.H. (2007) The profile and incidence of cancer in Down syndrome. Journal of Intellectual Disability Research, 51 (3). pp. 228-231.

Thomson, A., Glasson, E. and Bittles, A.H. (2007) Genomic imprinting and mental retardation: Angelman and Prader-Willi Syndroms. In: Carson, M.I., (ed.) Focus on Mental Retardation Research. Nova Science Publishers, New York, pp. 49-77.

Watanabe, A., Shiina, T., Shimizu, S., Hosomichi, K., Yanagiya, K., Kita, Y.F., Kimura, T., Soeda, E., Torii, R., Ogasawara, K., Kulski, J.K. and Inoko, H. (2007) A BAC-based contig map of the cynomolgus macaque (Macaca fascicularis) major histocompatibility complex genomic region. Genomics, 89 (3). pp. 402-412.

2006

Bellgard, M., Hampson, D.J. and La, T. (2006) Novel genes and proteins of Brachyspira Pilosicoli and use of same for diagnosis and therapy. Patent, WO/2006/136392 .

Bellgard, M., Hampson, D.J. and La, T. (2006) Novel genes and proteins of Brachyspira hyodysenteriae and use of same for diagnosis and therapy. Patent, WO/2006/119983 .

Binnewies, T.T., Motro, Y., Hallin, P.F., Lund, O., Dunn, D., La, T., Hampson, D.J., Bellgard, M., Wassenaar, T.M. and Ussery, D.W. (2006) Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Functional & Integrative Genomics, 6 (3). pp. 165-185.

Black, M.L., Dufall, K., Wise, C., Sullivan, S. and Bittles, A.H. (2006) Genetic ancestries in northwest Cambodia. Annals of Human Biology, 33 (5-6). pp. 620-627.

Cakir, M., McLean, R.B., Shankar, M.N., Drake-Brockman, F., Bariana, H.R. and Appels, R. (2006) Identifying closely linked SSR markers to Sr32 and Sr33 stem rust genes in wheat. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand

Hosomichi, K., Shiina, T., Suzuki, S., Tanaka, M., Shimizu, S., Iwamoto, S., Hara, H., Yoshida, Y., Kulski, J.K., Inoko, H. and Hanzawa, K. (2006) The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken. BMC Genomics, 7 (1).

Lehmensiek, A., Eckermann, P.J., Verbyla, A.P., Appels, R., Sutherland, M.W., Martin, D. and Daggard, G.E. (2006) Flour yield QTLs in three Australian doubled haploid wheat populations. Australian Journal of Agricultural Research, 57 (10). pp. 1115-1122.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) Erratum: LegumeDB bioinformatics resource: comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species. Genome, 49 (9). pp. 1206-1207.

Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R. and Bellgard, M. (2006) LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species. Genome, 49 (6). pp. 689-699.

Nelson, M., Phan, H., Ellwood, S., Moolhuijzen, P., Bellgard, M., Hane, J., Williams, A., Fosu-Nyarko, J., Wolko, B., Ksiarkiewicz, M., Cakir, M., Jones, M., Scobie, M., O'Lone, C., Barker, S., Oliver, R. and Cowling, W. (2006) The first gene-based map of narrow-leafed lupin - location of domestication genes and conserved synteny with Medicago truncatula. In: Crop Updates 2006: Lupins and Pulses, 15 - 16 February 2006, The Burswood International Resort, Perth.

Wicks, R.M., Spencer, P.B.S., Moolhuijzen, P. and Clark, P. (2006) Morphological and molecular characteristics of a species of Hepatozoon Miller, 1908 (Apicomplexa: Adeleorina) from the blood of Isoodon obesulus (Marsupialia: Peramelidae) in Western Australia. Systematic Parasitology, 65 (1). pp. 19-25.

Wilson, R.B., Barclay, I., McLean, R.B., Lambe, B.I., Crosbie, G.A., Stefanova, K.T., Cakir, M., Appels, R., Loughman, R.B., Shankar, M.N. and Broughton, S.E. (2006) Recent advances in wheat breeding in Australia. In: 13th Australasian Plant Breeding Conference, 18 - 21 April, Christchurch, New Zealand

2005

Anderson, J., Whitehand, S., Lichtenzveig, J., Moolhuijzen, P., Bellgard, M., Oliver, R. and Singh, K. (2005) Genetic analysis of defence responses against necrotrophic pathogens in legumes. In: 2nd Australian Model Legume Workshop, 5 - 8 April 2005, Rottnest Island, Western Australia

Appels, R. and Bellgard, M. (2005) Looking through genomics? From the editors. Functional & Integrative Genomics, 5 (1). pp. 1-3.

Appels, R., Ma, W., Verbyla, A., Cakir, M., Francki, M., Carter, M., Li, C., Lance, R., Wilson, R., McLean, R., Barclay, I. and Ryan, K. (2005) Molecular markers, wheat quality and accelerated breeding technologies. In: Chung, O.K. and Lookhart, G.L., (eds.) International Wheat Quality Conference Proceedings. Grain Industry Alliance, University of Wisconsin, Madison, pp. 59-64.

Bellgard, M., Williams, H., Smith, C., Macgregor, A., Hunter, A., Appels, R. and Griffiths, T. (2005) Grains composition and nutrition online database. Asia Pacific Journal of Clinical Nutrition, 14 (Supp. S110).

Dunn, D.S., Romphruk, A.V., Leelayuwat, C., Bellgard, M. and Kulski, J.K. (2005) Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the Northeastern Thais. Annals of Human Genetics, 69 (4). pp. 364-372.

Kikkawa, E.F., Tsuda, T.T., Naruse, T.K., Sumiyama, D., Fukuda, M., Kurita, M., Murata, K., Wilson, R.P., LeMaho, Y., Tsuda, M., Kulski, J.K. and Inoko, H. (2005) Analysis of the sequence variations in the Mhc DRB1-like gene of the endangered Humboldt penguin (Spheniscus humboldti). Immunogenetics, 57 (1-2). pp. 99-107.

Kulski, J.K., Kenworthy, W.D., Bellgard, M., Taplin, R., Okamoto, K., Oka, A., Mabuchi, T., Ozawa, A., Tamiya, G. and Inoko, H. (2005) Gene expression profiling of Japanese psoriatic skin reveals an increased activity in molecular stress and immune response signals. Journal of Molecular Medicine, 83 (12). pp. 964-975.

Lew, A.E., Jackson, L.A. and Bellgard, M.I. (2005) Comparative genomic analysis of non-coding sequences and the application of RNA interference tools for bovine functional genomics. Australian Journal of Experimental Agriculture, 45 (8). pp. 995-1010.

Moolhuijzen, P. (2005) LegumeDB bioinformatics resource: Comparative genomic analysis and novel cross genera marker identification in legume species. In: 2nd Australian Model Legume Workshop, 5 - 8 April 2005, Rottnest Island, Western Australia

Nelson, M., Phan, H., Ellwood, S., Moolhuijzen, P., Lone, C., Williams, A., Hane, J., Buirchell, B., Bellgard, M. and Cowling, W. (2005) Genetic mapping of domestication traits in narrow leafed lupin (lupinus angustifolius): Using synteny to search for candidate genes in Medicago truncatula. In: 2nd Australian Model Legume Workshop, 5-8 April 2005, Perth, Western Australia

Nozaki, Y. and Bellgard, M. (2005) Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penalties. Bioinformatics, 21 (8). pp. 1421-1428.

Nozaki, Y., Macgregor, A., Smith, C., Hunter, A. and Bellgard, M. (2005) Multidotter: Dot-matrix program for multiple sequences. In: Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05, 20 - 23 June, Las Vegas, USA

Phan, H., Elwood, S., Moolhuijzen, P., Williams, A., Hane, J., Ford, R., Bellgard, M. and Oliver, R. (2005) Genomic synteny in legumes: Application to crop breeding. In: 2nd Australian Model Legume Workshop, 5 - 8 April 2005, Rottnest Island, Western Australia

Zhang, J., Yang, X., Moolhuijzen, P., Li, C., Bellgard, M., Lance, R. and Appels, R. (2005) Towards isolation of the Barley Green Revolution gene. In: 12th Australian Barley Technical Symposium, 11 - 14 September 2005, Hobart, Tasmania.

2004

Anderson, J., Whitehand, S., Lichtenzveig, J., Moolhuijzen, P., Bellgard, M., Oliver, R. and Singh, K. (2004) Genetic analysis of defence responses against necrotrophic pathogens in legumes. In: ComBio 2004, 26 - 30 September 2004, Burswood Convention Centre, Perth

Appels, R., Cakir, M., Francki, M., Carter, M., Li, C., Lance, R., Wilson, R., McLean, R., Barclay, I., Loughman, R. and Ryan, K. (2004) Molecular markers and accelerated breeding technologies. In: 54th Australian Cereal Chemistry Conference: Cereals 2004, 21 - 24 September 2004, Canberra, Australia

Cakir, M., Bellgard, M., Appels, R. and Francki, M. (2004) Looking through genomics: Concepts and technologies for plant and animal genomics. Functional & Integrative Genomics, 4 (2). pp. 71-73.

Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M. and Appels, R. (2004) Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Functional & Integrative Genomics, 4 (2). pp. 118-130.

Hui, J., Oka, A., Tomizawa, M., Tay, G.K., Kulski, J.K., Penhale, W.J., Iaschi, S.P.A., Makino, S., Tamiya, G. and Inoko, H. (2004) Identification of two new C4 alleles by DNA sequencing and evidence for a historical recombination of serologically defined C4A and C4B alleles. Tissue Antigens, 63 (3). pp. 263-269.

Hunter, A., Schibeci, D., Hiew, H.L. and Bellgard, M. (2004) GRID-enabled bioinformatics applications for comparative genomic analysis at the CBBC. In: 2004 IEEE International Conference on Cluster Computing, ICCC 2004, 20 - 23 September, San Diego, CA, USA p. 486.

Moolhuijzen, P., Cakir, M., Madsen, L., Li, D., Hunter, A., Schibeci, D., Francki, M., Appels, R., Sandal, N. and Bellgard, M. (2004) Detailed comparative genomics and novel cross-species marker identification in Lupin and pasture legume species: Application of the legumeDB bioinformatics resources. In: Plant Genomics European Meeting , 22 - 25 September 2004, Lyon, France

2003

Bellgard, M., Hunter, A. and Kenworthy, W.D. (2003) Microarray analysis using bioinformatics analysis audit trails (BAATs). Comptes Rendus Biologies, 326 (10-11). pp. 1083-1087.

Bellgard, M. and Kenworthy, W.D. (2003) FBSA: feature-based sequence alignment technique for very large sequences. Applied Bioinformatics, 2 (3). pp. 145-150.

Black, M.L., Wise, C.A., Wang, W. and Bittles, A.H. (2003) Bayesian population genetics and the human history of China. In: 11th Conference of the International Society for Computational Biology, June 29 - July 3 2003, Brisbane, QLD.

Carter, M., Drake-Brockman, F., Cakir, M., Jones, M. and Appels, R. (2003) Application of a novel approach for the conversion of RFLP markers into PCR based markers in wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

Li, C., Tarr, A., Lance, R., Harasymow, S., Cakir, M. and Appels, R. (2003) Toward isolating gene controlling seed dormancy and preharvest sprouting in barley. In: XIX International Congress of Genetics, 6 - 11 July, Melbourne, Australia

Li, C., Tarr, A., Lance, R., Harasymow, S., Paynter, B., Fox, G., Cakir, M., Broughton, S., Grime, C., Appels, R., Collins, H. and Read, B. (2003) Search for the major QTLs controlling barley grain physical quality. In: 11th Australian Barley Technical Symposium, 7 - 10 September 2003, Glenelg, South Australia

Raman, H., Zhang, K., Setters, T., Moroni, L.K.S., Appels, R., Cakir, M., Raman, R., Delhaize, M., Ryan, P., Martin, P., Milgate, A., Mackay, M. and Matsumato, H. (2003) Molecular mapping and mechanism of aluminium tolerance in five DH populations of bread wheat. In: 10th International Wheat Genetics Symposium (2003), 1 - 6 September 2003, Paestum, Italy

2002

Dunn, D.S., Naruse, T., Inoko, H. and Kulski, J.K. (2002) The association between HLA-A alleles and young Alu dimorphisms near the HLA-J, -H, and -F genes in workshop cell lines and Japanese and Australian populations. Journal of Molecular Evolution, 55 (6). pp. 718-726.

Fosu-Nyarko, J., Jones, R.A.C., Smith, L.J., Jones, M.G.K. and Dwyer, G.I. (2002) Host range and symptomatology of Subterranean clover mottle virus in alternative pasture, forage and crop legumes. Australasian Plant Pathology, 31 (4). pp. 345-350.

Kulski, J.K., Dunn, D.S., Hui, J., Martinez, P., Romphruk, A.V., Leelayuwat, C., Tay, G.K., Oka, A. and Inoko, H. (2002) Alu polymorphism within the MICB gene and association with HLA-B alleles. Immunogenetics, 53 (10-11). pp. 975-979.

Kulski, J.K., Dunn, D.S., Hui, J., Martinez, P., Romphruk, A.V., Leelayuwat, C., Tay, G.K., Oka, A. and Inoko, H. (2002) Alu polymorphism within the MICB gene and association with HLA-B alleles (Erratum). Immunogenetics, 54 (5). p. 365.

2001

Carter, K., Oka, A.I., Tamiya, G. and Bellgard, M.I. (2001) Bioinformatics issues for automating the annotation of genomic sequences. Genome informatics series : proceedings of the . Workshop on Genome Informatics. Workshop on Genome Informatics, 12 . pp. 204-211.

2000

Murphy, N.E., Loughman, R., Appels, R., Lagudah, E.S. and Jones, M.G.K. (2000) Genetic variability in a collection of Stagonospora nodorum isolates from Western Australia. Australian Journal of Agricultural Research, 51 (6). pp. 679-684.

1999

Wang, W., Black, M.L., Jia, H.L., Qian, C. and Bittles, A.H. (1999) A comparison of autosomal and Y-chromosome allele profiles in co-resident Han and Hui communities in northeast China. In: Human Genome Meeting '99, 27 - 30 March 1999, Brisbane, QLD

1996

Bartlett, R.J., Winand, N.J., Secore, S.L., Singer, J.T., Fletcher, S., Wilton, S., Bogan, D.J., Metcalf-Bogan, J.R., Bartlett, W.T., Howell, J.M., Cooper, B.J. and Kornegay, J.N. (1996) Mutation segregation and rapid carrier detection of X-linked muscular dystrophy in dogs. American Journal of Veterinary Research, 57 (5). pp. 650-654.

1995

Hamill, J.D., Harrison, R., Pelosi, A., Moolhuijzen, P., O'Dwyer, C., Zhang, X., Spratt, C., Pascoe, C. and Chandler, S.F. (1995) The use of agrobacterium rhizogenes to improve rooting capacity of recalcitrant eucalypt clones. In: CRC-IUFRO Conference: Eucalypt Plantations, 19 - 24 February 1995, Hobart, Tasmania.

1992

Willyams, D., Moolhuijzen, P., Volker, P.W., Raymond, C.A. and Chandler, S.F. (1992) Micropropagation of juvenile eucalptus regans. In: IUFRO/AFOCEL Symposium on Mass production technology for genetically fast growing tree species, 14 - 18 September 1992, Bordeaux, France

This list was generated on Fri Jul 25 14:24:12 2014 IST.